SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1594

Length: 2064 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1594
ATCAATTTATCCATTCCAGCCTCTTTCTGAACTGGTTGTATTGCTTGCATGCCCATTTTCTCAATCTTCATCTTCTTTTACATCTTCCATGTATTCAGCCTGTTCTGTTAAATGTTGATGAAGTGTTCTTCTCATCATAAGCATGGCATTAATGCTGCCTCGAACGGGATCACCGTCAATTCACTTTCTGTGTGCTTCGGAGACTTCTTCAATGCCCATTGGACTCAAATTGGTAACGAAGAATCATTCATGCGCTTTGAGGATCAGAGAAGCTTCTTGTTGTGAGACAACTACAGTTTTAACAGTGACTGCTGTTCCTAGTTTTACTAGAAAAGCTCAAGCACCTGCTGTGAAGGCTCATTCTTCCTCATTGTCAATTATTGAAGATGTACAATACAACGCTGAGGCTATTAGCCAGCAGACAAAGCCTAGCATTGAGGTAACCATAGCAACAGAAACATTATTGCAGAGTGAAATGGCTGGAATAGAAGCTGCAGCAGCAGAAGCTGTGGCTTTAGCAAAGGCCGCTGTGAAGGCTGCCAGAGAGGTGGTTGCTTTATCAGAAGGCCAAACACCATTAGAAAGTGAGTACTTGAAGGACGTTCCTTCTGAGGCTGACTTATTAAGGATTGAAAGGGCTAGACTCACTGAAATGGAACGGTTAGAAGATATGAACTTCTCAAATAGAGTTCAATTGTTTGAAATTCACTCAGAAGAGGAATGTGAATCTCAATCTCCAAGCTCCTCCAGTTCTACACCTGCACTTGGAAGGGAGTGTAATATCTCTGAACAAAATGCAGCCAACTCTTCTGTATCCCCTCTGCAGAAGACATATAATATAAAGGCAAGATCTTGTCGACAAATGGAAAGAAGAGCTAGGAGAGTAAGGGCAGCAGAGAAAGCTGCAACTGTGGCTTCTACTATTTCGCCTACCCGTTCAAGTCGGAAGGTAAAAAAGGCTGTTGCATCTAATCGTCATACTTCTGATTCGATCCGCCTGTTGCGAGACCCGAGCAGTTCAAAACTTTTAACTGCAAGTGAGGAAGTAGAGCTTTCACGAGGAATACAGGACCTTATCAAGTTAGATAAAATCAGGGCAAAGTATAAAGAGAAAACTGGAAAAGAGCCAACTCTAGCTCAATGGGCAGAAGTTATTAGCATTGACCAGACAACTTTGAAAAGGCGGTTACAGGTGGGATGGGATTCATTTGATAAAATCATCAATTGCAACCTTCGGCTGGTTATATCTGTTGCAAAAAATTATCAAAACCGAGGATTGAGCCTACAAGACCTTATTCAGGCAGGAAGCATGGGTCTCATGCGGAGTGCTGAGAAGTTTGATCATTCACGTGGATTTAAGTTTTCTACATATGCTTACTGGTGGATTAGACAGTCTATTACAAAGGCACTTACAGAGCAGTCAAGGACAATCCGGTTACCTGTGCACATTGTTGAGTCAATGAATCGAATAAGAGCGTCACGGAGGCTGTTGTACCAGGAGCATAGAAGAGATCCTACAAAAGAAGAAGTTGCGGAGGTAGCAGGAATGACCCTGTCAAGACTGAGACATGTGACTAGGTGTTCAAGAGCTCCGATATCCCTTGATAGACCCGTTCGGAAAGACATGGATGAGAAGTTCTCGGATATTGTTGCAGATACAGATTCTGAGAGTACCGAGATAATTGCTAGCAAGGAGCTATTAAAGAAAGACCTTGATAAAGTTCTAGACACTCTTACACCAAGGGAGAAACAAGTGGTGAGATTACGCTATGGGCTGGATGATGGCAGAATGAAATCTCTTCATGAGGTTGGAGACCACTTCTCTCTCAGCAGAGAGAGGGTCAGACAGATAGAAGTAAAAGCCATGATTAAGCTACGACAGAACCACAGAACCCAAAATTTAAAGCATTATATAGACATCTAAATGACGAATATAACATCAGAAGACCTGCTTGCTACAGCAATCAGCTAGCTTAACACTGCAAAAAATGCGTAGCGCTCTGGTAAATTTGCTTTGGAGAAAAAAATCATTTGCAGTGGAAATTACTTGTGGGTAGAAAGTTG

Ace file of the UniGene sp_v1.1_unigene1594

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=E1C9M6_PHYPA	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	rna polymerase sigma factor	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	RNA polymerase sigma-70 factor	IPR000943	-	70%
Blast2go	RNA polymerase sigma-70 region 3	IPR007624	-	70%
Blast2go	RNA polymerase sigma-70 region 2	IPR007627	-	70%
Blast2go	RNA polymerase sigma-70 region 4	IPR007630	-	70%
Blast2go	RNA polymerase sigma-70 region 1.2	IPR009042	-	70%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	70%
Blast2go	RNA polymerase sigma factor, region 3/4	IPR013324	-	70%
Blast2go	RNA polymerase sigma factor, region 2	IPR013325	-	70%
Blast2go	RNA polymerase sigma-70	IPR014284	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLW6

Fln msg:

Fln protein: MALMLPRTGSPSIHFLCASETSSMPIGLKLVTKNHSCALRIREASCCETTTVLTVTAVPSFTRKAQAPAVKAHSSSLSIIEDVQYNAEAISQQTKPSIEVTIATETLLQSEMAGIEAAAAEAVALAKAAVKAAREVVALSEGQTPLESEYLKDVPSEADLLRIERARLTEMERLEDMNFSNRVQLFEIHSEEECESQSPSSSSSTPALGRECNISEQNAANSSVSPLQKTYNIKARSCRQMERRARRVRAAEKAATVASTISPTRSSRKVKKAVASNRHTSDSIRLLRDPSSSKLLTASEEVELSRGIQDLIKLDKIRAKYKEKTGKEPTLAQWAEVISIDQTTLKRRLQVGWDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDHSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMNRIRASRRLLYQEHRRDPTKEEVAEVAGMTLSRLRHVTRCSRAPISLDRPVRKDMDEKFSDIVADTDSESTEIIASKELLKKDLDKVLDTLTPREKQVVRLRYGLDDGRMKSLHEVGDHFSLSRERVRQIEVKAMIKLRQNHRTQNLKHYIDI*

Protein Length: 595

Fln nts: ATCAATTTATCCATTCCAGCCTCTTTCTGAACTGGTTGTATTGCTTGCATGCCCATTTTCTCAATCTTCATCTTCTTTTACATCTTCCATGTATTCAGCCTGTTCTGTTAAATGTTGATGAAGTGTTCTTCTCATCATAAGC_-_ATGGCATTAATGCTGCCTCGAACGGGATCACCGTCAATTCACTTTCTGTGTGCTTCGGAGACTTCTTCAATGCCCATTGGACTCAAATTGGTAACGAAGAATCATTCATGCGCTTTGAGGATCAGAGAAGCTTCTTGTTGTGAGACAACTACAGTTTTAACAGTGACTGCTGTTCCTAGTTTTACTAGAAAAGCTCAAGCACCTGCTGTGAAGGCTCATTCTTCCTCATTGTCAATTATTGAAGATGTACAATACAACGCTGAGGCTATTAGCCAGCAGACAAAGCCTAGCATTGAGGTAACCATAGCAACAGAAACATTATTGCAGAGTGAAATGGCTGGAATAGAAGCTGCAGCAGCAGAAGCTGTGGCTTTAGCAAAGGCCGCTGTGAAGGCTGCCAGAGAGGTGGTTGCTTTATCAGAAGGCCAAACACCATTAGAAAGTGAGTACTTGAAGGACGTTCCTTCTGAGGCTGACTTATTAAGGATTGAAAGGGCTAGACTCACTGAAATGGAACGGTTAGAAGATATGAACTTCTCAAATAGAGTTCAATTGTTTGAAATTCACTCAGAAGAGGAATGTGAATCTCAATCTCCAAGCTCCTCCAGTTCTACACCTGCACTTGGAAGGGAGTGTAATATCTCTGAACAAAATGCAGCCAACTCTTCTGTATCCCCTCTGCAGAAGACATATAATATAAAGGCAAGATCTTGTCGACAAATGGAAAGAAGAGCTAGGAGAGTAAGGGCAGCAGAGAAAGCTGCAACTGTGGCTTCTACTATTTCGCCTACCCGTTCAAGTCGGAAGGTAAAAAAGGCTGTTGCATCTAATCGTCATACTTCTGATTCGATCCGCCTGTTGCGAGACCCGAGCAGTTCAAAACTTTTAACTGCAAGTGAGGAAGTAGAGCTTTCACGAGGAATACAGGACCTTATCAAGTTAGATAAAATCAGGGCAAAGTATAAAGAGAAAACTGGAAAAGAGCCAACTCTAGCTCAATGGGCAGAAGTTATTAGCATTGACCAGACAACTTTGAAAAGGCGGTTACAGGTGGGATGGGATTCATTTGATAAAATCATCAATTGCAACCTTCGGCTGGTTATATCTGTTGCAAAAAATTATCAAAACCGAGGATTGAGCCTACAAGACCTTATTCAGGCAGGAAGCATGGGTCTCATGCGGAGTGCTGAGAAGTTTGATCATTCACGTGGATTTAAGTTTTCTACATATGCTTACTGGTGGATTAGACAGTCTATTACAAAGGCACTTACAGAGCAGTCAAGGACAATCCGGTTACCTGTGCACATTGTTGAGTCAATGAATCGAATAAGAGCGTCACGGAGGCTGTTGTACCAGGAGCATAGAAGAGATCCTACAAAAGAAGAAGTTGCGGAGGTAGCAGGAATGACCCTGTCAAGACTGAGACATGTGACTAGGTGTTCAAGAGCTCCGATATCCCTTGATAGACCCGTTCGGAAAGACATGGATGAGAAGTTCTCGGATATTGTTGCAGATACAGATTCTGAGAGTACCGAGATAATTGCTAGCAAGGAGCTATTAAAGAAAGACCTTGATAAAGTTCTAGACACTCTTACACCAAGGGAGAAACAAGTGGTGAGATTACGCTATGGGCTGGATGATGGCAGAATGAAATCTCTTCATGAGGTTGGAGACCACTTCTCTCTCAGCAGAGAGAGGGTCAGACAGATAGAAGTAAAAGCCATGATTAAGCTACGACAGAACCACAGAACCCAAAATTTAAAGCATTATATAGACATCTAA___ATGACGAATATAACATCAGAAGACCTGCTTGCTACAGCAATCAGCTAGCTTAACACTGCAAAAAATGCGTAGCGCTCTGGTAAATTTGCTTTGGAGAAAAAAATCATTTGCAGTGGAAATTACTTGTGGGTAGAAAGTTG

Fln Alignment:

sp_v1.1_unigene1594___MALMLPRTGSPSIHFLCASETSSMPIGLKLVTKNHSCALRIREASCCETTTVLTVTAVPSFTRKAQAPAVKAHSSSLSIIEDVQYNAEAISQQTKPSIEVTIATETLLQSEMAGIEXXXXXXXXXXXXXXXXXXXXXXXSEGQTPLESEYLKDVPSEADLLRIERARLTEMERLEDMNFSNRVQLFEIHXXXXXXXXXXXXXXXTPALGRECNISEQNAANSSVSPLQKTYNIKARSCRQMXXXXXXXXXXXXXXXXXSTISPTRSSRKVKKAVASNRHTSDSIRLLRDPSSSKLLTASEEVELSRGIQDLIKLDKIRAKYKEKTGKEPTLAQWAEVISIDQTTLKRRLQVGWDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDHSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMNRIRASRRLLYQEHRRDPTKEEVAEVAGMTLSRLRHVTRCSRAPISLDRPVRKDMDEKFSDIVADTDSESTEIIASKEXXXXXXXXXXXXXXPREKQVVRLRYGLDDGRMKSLHEVGDHFSLSRERVRQIEVKAMIKLRQNHRTQNLKHYIDI
B8LLW6______________MAWMLPRTGSPSIHFLCASETSSMPIGFKLVMKNHSCALRIREASCCETTTVLSVTAVPSFTRKDQAPAAKAHSSSLSIIEDVQYNTEPINQQTKPSMKVTIATETLLQSEMAGIEAAAAEAVALAKAAVKAARDVVALSEGQTPLESEYLKDFPSEADLLRIERARLTEMERLEAMNFSNRVQLFEIHSEEECESQSPSSSSSTPALGRECNISE-HAANSLVSPLQKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYLDI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1499		90		10	0.90298
1500		90	10		0.90298
1772	20	80			0.995493
1774	80		20		0.995493
1775			20	80	0.995493
1982		75		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain