SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1592

Length: 1156 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1592 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	56%
Blast2go	predicted protein [Populus trichocarpa]	-	-	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9HK92

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAEAVEMEVDSVCESSKPATVVDLLRRFLTVQENRAAIYARWKRGFTEYLRTGGDRVYQQICSQITTEFNDCSKQVIEMESILGGSDYRREDLVHLLKTVQAHEKQKLHMVATIQVLKKAGRPSERHVQLKNRPVEHRCHHVTEITEVTGLEDAEADAEYDAALNEAIRVIQEVVTYINDQMEEVRYEIEELEAKECQENQ*

Protein Length: 203

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCGTTCGATACTTACGCGCGGACTCCCGGGCACCTCGGAGAAAGCGCAACTATAGTGTCAAGAAGGCCTGAATTTTTCGCGCA_-_ATGGCGGAGGCAGTGGAGATGGAGGTGGACAGTGTTTGCGAGAGTTCGAAGCCCGCGACGGTGGTTGATCTGCTCCGTCGGTTTCTCACCGTGCAAGAGAACAGAGCTGCAATTTACGCCAGATGGAAGAGGGGCTTTACGGAATATTTAAGAACAGGAGGTGATCGGGTCTATCAGCAAATTTGCAGTCAAATCACCACCGAATTCAATGATTGTTCGAAACAAGTAATTGAAATGGAATCAATACTCGGGGGATCAGATTATCGCCGAGAAGACCTTGTTCATTTGCTGAAGACAGTTCAGGCCCATGAGAAGCAGAAGCTACATATGGTTGCTACTATCCAAGTTTTGAAGAAGGCTGGCCGTCCATCAGAGCGCCATGTTCAGTTGAAGAACAGGCCTGTTGAGCATCGATGTCATCATGTTACTGAGATAACAGAGGTCACTGGGCTTGAGGATGCAGAGGCAGATGCTGAGTATGATGCTGCATTAAATGAAGCAATCAGAGTTATACAGGAAGTAGTGACATATATTAATGATCAAATGGAAGAGGTTAGATATGAGATTGAAGAGTTGGAAGCTAAAGAATGTCAGGAGAATCAATGAACTATTTCTTAGCTGGATTTCTGGGTATATTGTAAGAGGCATTGGCAATTGTATGTCTACTACCTGATTTTTTTGTATATAACATGTGAGAGCGACCTCTATATATTACAGCTTTTCTGAGATTGCAGTGAAGGCTTCTGAAATGTTGTAAAACGATGGATTTTATAACGAGGATTTGTATATCCTACATCAAACAAAGGTATTACATGGCTCTCTTATCTTTATAGTGCCTGCAAGGCATTTGGAGTTAAGTGCAAAGAAGACAGAAATAAGTTTATGGAAGCATTGCTTGCTTTGGTGAGGTTGGTGTCAAACTTACTGCTATCTGACAATTAAATGTGACTATCATTTTGGAATCATAGAACTTAGAAAAGAATATTGCAGAACAAGCACTCGACTGAAACTGTCAATACCATTATGTCCATGCGATTCAGCAGTATTT

Fln Alignment:

sp_v1.1_unigene1592___AMAEAVEMEVDSVCESSKPATVVDLLRRFLTVQENRAAIYARWKRGFTEYLRTGGDRVYQQICSQITTEFNDCSKQVIEMESILGGSDYRREDLVHLLKTVQAHEKQKLHMVATIQVLKKAGRPSERHVQLKN----RPVEHRCHHVTEITEVTGLXXXXXXXXXXXXXXXAIRVIQEVVTYINDQMEEVRYEIEELEAK
B9HK92______________SLTDTEAMETEAAASSSKSSNTLLLLRRFLEIQERRAQAYAKLKQGFSEYMVSGGELAYQQLCSKITEEFNDCSKQVIEMESLFLNPDHDRVDLAHLLRDIQTQEKQKLHLTATIQLLKKAGRPSERLVNHENCRFSRPMEHECVHLHEITEASGTEEAEADAEYDNALKEAIRGVQDSVTTINEHLEEIKYEIAALEAQ

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
686	10	90			0.90298
692	10		90		0.90298
727		20		80	0.999996
751	88			11	0.923564
793		10		90	0.90298
794		10	90		0.90298
795	90	10			0.90298
796			20	80	0.999996
835	87	12			0.992554
837	87	12			0.992554
850	28		71		1.0
916	44		55		1.0
930		12		87	0.992554
971		85		14	0.993533
974		85	14		0.993533
975			85	14	0.993533
983		14		85	0.993533
987		85	14		0.993533
988		85	14		0.993533
989	85			14	0.993533
993	14			85	0.993533
1014	75		25		0.996473
1047		75		25	0.996473
1048		75	25		0.996473
1050			25	75	0.996473
1052		25	75		0.996473
1053	25	75			0.996473
1054		50	50		1.0
1055	50	50			1.0
1056			75	25	0.996473
1057	66	33			0.997452
1058	66	33			0.997452
1061	66		33		0.997452
1062			33	66	0.997452
1066		33	66		0.997452
1068	33	66			0.997452
1070			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain