SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1583

Length: 1542 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1583 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	copper ion binding protein, putative	-	-	1.0e-11	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	copper ion binding	-	-	2.06321e-22	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heavy metal-associated domain, HMA	IPR006121	-	2.06321e-22	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPH2

Fln msg: your sequence is longer than subject: 257 - 148

Fln protein: MSNHLERPLITEIQVRMDCNGCVQKIRRALQTLQGIYDVYIDFPQQKVTVVGWVDPDLLMKAIKKAGKRAKLCSHVRDEETADRADPAAASSSDPTTVTEQPANPATETVTEQTAGEQPPPPPAEQPPAEAAPADAPPPENADQPAAPAEPAPENPTPEPLPVPLDHTILIRNGLDGYQVAQEHLRDADYRYANEYYPRSYNVPEYADAQRRYNRRYMGGEQYYYTNGVPMRQNAADDNRFTSLFSDENPNACSIT*

Protein Length: 258

Fln nts: AGTCTTCGTTGATCTGTTCAGCTTATGGTTTTCTGCTAAATCGCTTCCGCAA_-_ATGTCGAACCATCTGGAGAGACCTCTTATAACTGAAATACAAGTCCGTATGGACTGTAACGGCTGCGTTCAGAAGATACGTAGAGCTCTGCAAACTCTTCAAGGCATTTATGACGTTTACATAGATTTCCCCCAACAAAAGGTGACAGTGGTAGGATGGGTTGATCCAGACCTATTAATGAAGGCCATAAAGAAAGCCGGGAAAAGAGCCAAACTGTGCAGCCACGTACGCGATGAAGAAACGGCCGACAGAGCCGACCCGGCGGCCGCTTCTTCCTCAGATCCGACAACCGTAACAGAGCAGCCCGCCAACCCAGCAACAGAAACGGTAACGGAGCAAACTGCCGGAGAGCAACCTCCGCCGCCACCAGCAGAGCAGCCGCCCGCTGAAGCAGCACCTGCCGATGCTCCGCCGCCAGAAAACGCAGACCAACCTGCTGCGCCAGCAGAGCCGGCGCCGGAAAATCCAACTCCGGAGCCACTCCCGGTTCCTCTCGACCACACAATTCTGATCCGAAACGGGCTGGATGGCTATCAGGTGGCGCAAGAACACTTGAGGGACGCAGATTATCGTTATGCCAATGAATATTATCCTAGGTCATATAATGTTCCCGAATATGCCGATGCCCAACGAAGGTATAATCGCAGATATATGGGTGGGGAACAGTATTACTACACTAATGGAGTTCCCATGAGGCAAAATGCAGCAGATGACAACAGGTTCACCTCCCTGTTTAGCGATGAGAATCCAAATGCCTGCTCCATAACATAA___GCTCATAAAATCTCATCCTGCTTATGTTTGAATTGGAGAATTCAAATATTATGCTTATGATGATGGATGCAGGAATTACCTATATCTGAAATGTTTTTCTCCAACTTTTTTGTTCTGCTCCTAATAAATTTCAACTCTATCAAGAAGACACAATTGTAGGTTACTCTTAGTAATACAATCAAGATCCTTGTGCTGGCCAGAAATGGTTGGCTGATATGCATGGAAAGCTAAGATGCAGATCAGATTAGATTCCAGTTGTGACGATTTGGACATGTTATTCCAAGGGACAAGTAGTACCTACAAGAAGACAAGAATGTATCTATGCCCCACTGGATTGTTCTGACGTGAATGGAATCATATCCCATGCCATCACTTGAAATAATGGCGGACCAGGAAACGAATCGTCTCTCTTTTTTGGTTCTCCAGTATTAATATATTAATGGTTGAAGCGAGAATCTCAAGTTTGTTGTATACCAGAACTTTTTGATATGCCTTCTGCGACAAGGAATTCTGTTCTTTGTATAAATTAAATAAAGCAGAATGGAATTCGACTTTGAGTGTATCACTTTTTGACGAATGGATCGAGTATGTGGAAAGGTCATTTGTTCTTGAAGACTTTGATTCCTTTCAAAATGCAAACTCATATTTGTTCCCGAAGGCTTGATTCCATTCAAAATGCAAACTCATTGTTATTTGATGGGCAATACGAGATGAACTTT

Fln Alignment:

sp_v1.1_unigene1583___EIQVRMDCNGCVQKIRRALQTLQGIYDVYIDFPQQKVTVVGWVDPDLLMKAIKKAGKRAKLCSHV
B8LPH2______________ELKVRMDCDGCERKVRKALASMSGVQSVEIDRKLQKVTVTGYVEANKVLKKVKESGKRAELWPYV

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
331			14	85	0.993533
333			85	14	0.993533
466	84	15			0.999986
467	84	15			0.999986
512	10		90		0.90298
580	11			88	0.923564
581		11		88	0.923564
582		11	88		0.923564
654	40	60			1.0
756		10	90		0.90298
758		10		90	0.90298
761	90			10	0.90298
903	66		33		0.997452
984		60		40	1.0
1099	16		83		0.999991
1152	81		18		0.999994
1252		12	87		0.992554
1253		12		87	0.992554
1254	12			87	0.992554
1323			80	20	0.995493
1330			20	80	0.995493
1331	20	80			0.995493
1332	80		20		0.995493
1340		80		20	0.995493
1343		80		20	0.995493
1344	20	80			0.995493
1357	33			66	0.997452
1486	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain