SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1577

Length: 1538 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1577

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GEM-like 1 n=2 Tax=Vitis vinifera RepID=A7LH72_VITVI	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	gem-like 1	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	73%
Blast2go	histone H3-K9 methylation	GO:0051567	Biological Process	73%
Blast2go	regulation of epidermal cell division	GO:0010482	Biological Process	73%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GRAM	IPR004182	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEF3

Fln msg:

Fln protein: MEKRESSNQEQKEKDEGGSKKQLKAEESPSSTEQGHRHIEGEYAPYPKLEAADLSKGAPPLQGQWGGTWVMGSPANPDAHPVNQQAATWVAESESAASAPPMPAGQQEPSFQANPYVATTSVPSSSNKNSMETVKNVLGRWGKKVGEATKMAEDLAGNVWQHLKTGPSIADTAMERLAQGTKVLTEGGYEKIFRQTFETLPEEQLQKTYTCYLSTTAGPVIGTLYLSTEKIAFCSDNPLSYKVNPDKTEWSFYKVVLPLHQLKDVNPSANRANPAEKYIQIISTDNHEFWFMGFVNYDKAVKNLQGILKREGA*

Protein Length: 315

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATTGTGTATACATCCTTGCCATGGCATAAATGGCATTTTACATGATATGAAGAAGATCTGAGATAGCTTAGCTTCCTTCGCCTGCATTATTATTGGTTTGGATTTATTGAATTGGATTTAGAAGAGAG_-_ATGGAGAAGCGAGAGAGCAGCAACCAGGAACAGAAGGAAAAAGACGAGGGAGGATCAAAAAAGCAGTTGAAGGCAGAAGAATCTCCGTCGTCGACAGAGCAGGGGCACAGGCACATCGAGGGGGAGTATGCGCCATATCCTAAGCTGGAGGCGGCGGATCTTAGCAAGGGGGCGCCACCTCTTCAGGGGCAGTGGGGGGGGACCTGGGTGATGGGATCGCCTGCTAATCCCGACGCCCATCCAGTCAATCAACAAGCTGCCACTTGGGTTGCCGAATCTGAATCCGCAGCATCTGCTCCTCCAATGCCTGCCGGCCAACAGGAACCCTCTTTTCAGGCAAACCCTTACGTGGCCACAACATCGGTTCCTTCTTCATCTAACAAAAATTCTATGGAAACAGTCAAGAATGTATTGGGTAGATGGGGCAAGAAGGTTGGGGAGGCAACAAAAATGGCAGAAGACCTGGCTGGGAATGTCTGGCAACATTTGAAAACAGGCCCTAGTATTGCCGACACAGCTATGGAGAGGCTTGCTCAAGGGACGAAAGTGCTTACTGAAGGTGGCTATGAAAAGATCTTCCGCCAGACATTTGAAACCCTCCCAGAAGAACAACTACAGAAGACTTACACTTGCTACTTGTCAACTACTGCTGGGCCTGTCATAGGAACACTTTATTTGTCCACTGAAAAGATTGCTTTTTGCAGTGATAACCCTCTTTCTTACAAGGTCAATCCTGATAAAACTGAATGGAGTTTTTACAAGGTGGTGCTACCTCTTCATCAACTGAAAGATGTCAATCCTTCGGCAAATAGAGCCAACCCTGCGGAGAAATACATTCAGATAATTTCTACTGACAACCATGAATTTTGGTTCATGGGTTTTGTAAACTATGATAAAGCAGTAAAGAATCTGCAAGGAATTTTGAAAAGAGAGGGGGCATAG___CTAACCAGTGGACCATCAAAGGAGGACATATAAATCATAATCACCTGTTGGGCAAGTTTGAAGTTGTTTATACTGTAAGGTATCCTCTTTGGAGCATGGATGATCAACGTTAGAATATTTGTATTTCACAGTCATGGTCATGTATAACCTAAATCCATGCATATTTCTTGTGAAAATTTGCTCCCTTCGGTTAAAACACACGCCCGTATTTGTAGCAAACATTTGATTTGGTATTATTTTTATCTTTGTGTCTTTGCTTTCTCCTAAATAAACTTGGATCTCACATAATCCCCTTTCCACATACAATTTTCCTTTCGAAATGGGCTGCTTACATTATTGTTTCCAACGGTTGTCATGAAATTATAGATATGCTGGTCCCCATATGTTCCGAATTGTAGGCATCTCTATTAAGTGGTCATTGTTCAAGTAAATTATTTTCGGC

Fln Alignment:

sp_v1.1_unigene1577___MEKRESSNQEQK-EKDEGGS---KKQLKAEESPSSTEQGHRHIEGEYAPYPKLEAADLSKGAPPLQGQWGGTWVMGSPANPDAHPVNQQAATWVXXXXXXXXXXXXXXGQQEPSFQANPYVATTSVPSSSNKNSMETVKNVLGRWGKKVGEATKMAEDLAGNVWQHLKTGPSIADTAMERLAQGTKVLTEGGYEKIFRQTFETLPEEQLQKTYTCYLSTTAGPVIGTLYLSTEKIAFCSDNPLSYKVNPDKTEWSFYKVVLPLHQLKDVNPSANRANPAEKYIQIISTDNHEFWFMGFVNYDKAVKNLQGILKREGA
D5AEF3______________MEQTESSKQEQETEVKHGGSYEQERQLKAEEYPSTTEHGHRNSEGEYVPYPKLEAADLSKGVPPLQGQWGGTWVMGSPANPDAHPVNHQAATWVAESASAPPAAAMPDLQHESSLPTNPYVATTSVPASSAKNSMEAVRDVIGRWGKKVGEATKMAEDLAGNVWQHLKTGPSIADTAMERLAQGTKVLTEGGYEKIFRQTFETLPEEQLQKTYTCYLSTTAGPVIGTLYLSTEKIAFCSDNPLSYKVNADKTEWSFYKVALPLHQLKAVNASANRANPAEKYIQITSTDNHEFWFMGFVNYGKAVKNLQGVWKREGA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
159		33		66	0.997452
160		33	66		0.997452
161			66	33	0.997452
162	75		25		0.996473
164	75	25			0.996473
165	75			25	0.996473
167		75	25		0.996473
170	25		75		0.996473
171	75			25	0.996473
173	75			25	0.996473
174		25	75		0.996473
175		75		25	0.996473
176	75		25		0.996473
517	83		16		0.994512
661		12		87	0.992554
1287		54		45	1.0
1304		42		57	1.0
1334			33	66	1.0
1398	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain