SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1571

Length: 1762 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1571 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Magnesium chelatase ATPase subunit I n=3 Tax=BEP clade RepID=Q53RM0_ORYSJ	-	-	72%
FL-Next	sp=Magnesium-chelatase subunit chlI, chloroplastic; Nicotiana tabacum (Common tobacco).	-	-	74%
Blast2go	protein ch-42 chloroplast	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	84%
Blast2go	ATPase activity	GO:0016887	Molecular Function	84%
Blast2go	cell wall	GO:0005618	Cellular Component	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Magnesium chelatase, ChlI subunit	IPR000523	-	84%
Blast2go	AAA+ ATPase domain	IPR003593	-	84%
Blast2go	Magnesium chelatase, ATPase subunit I	IPR011775	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O22436

Fln msg:

Fln protein: MDKRSSVLYMGDSLHCKPSFGSPRNRAMSTTMSGMLGASAALSMGSFNVSSPDRRVHIPPLASRSDYFLGSRRMLGCRMRLPKRRFQGTVAVNSVASEVISTDQVKKGVSKDTQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIRVVAADPFNSDPDDPESMSEDVRQRVEREEQLPSVMTKITMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDAAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERAKFDRDPKAFRESYMQEQLKLQNQIFEARKLLPKVQIDHGIRVKISQVCSELNVDGLRGDIVSNRAAKALAALKGREEVATEDVMTVIPNCLRHRLRKDPLESIDSGLLVVEKFYEVFG*

Protein Length: 456

Fln nts: ATGGGGGAAGGATCGTGAATGA_-_ATGGACAAAAGGTCATCGGTTCTCTATATGGGGGATTCTTTACACTGTAAACCTTCGTTCGGTTCACCGAGAAACCGAGCCATGTCCACAACAATGTCAGGCATGCTGGGAGCTTCTGCTGCATTATCCATGGGGAGCTTCAACGTTTCATCCCCTGACCGCCGCGTCCACATTCCCCCCCTTGCCTCCCGTTCCGACTATTTCCTTGGAAGCAGACGTATGCTGGGATGCAGAATGCGGCTGCCCAAGAGAAGATTTCAGGGTACTGTAGCCGTGAACAGTGTGGCTAGTGAAGTTATATCAACTGACCAAGTGAAGAAAGGCGTATCCAAGGATACCCAGAGACCTGTATATCCTTTTGCAGCAATTGTGGGTCAGGATGAGATGAAACTGTGTCTTTTGTTGAATGTAATTGACCCAAAAATTGGAGGAGTCATGATCATGGGTGACCGGGGCACAGGAAAATCAACCACAGTAAGGTCTCTTGTGGACTTGCTGCCTGAAATCCGGGTGGTTGCTGCTGATCCCTTCAATTCTGACCCTGATGATCCAGAGTCTATGAGTGAGGATGTTCGGCAGAGAGTGGAAAGAGAAGAGCAACTGCCTTCTGTCATGACAAAAATCACTATGGTGGACTTGCCGTTGGGTGCAACTGAAGACAGAGTTTGTGGAACAATTGACATAGAGAAGGCACTCACAGAGGGTGTCAAGGCATTTGAGCCTGGTCTTCTCGCCAAAGCAAACAGGGGAATTCTGTATGTTGATGAGGTTAATCTTCTTGATGATCATTTGGTAGATGTGCTGCTAGATGCTGCTGCTTCTGGTTGGAATACTGTGGAGAGAGAAGGGATTTCTATCTCTCATCCGGCTCGTTTTATTCTCATTGGTTCAGGAAATCCAGAGGAAGGTGAGCTTCGTCCTCAACTTTTGGACAGGTTTGGTATGCATGCTCAGGTTGGGACAGTAAGAGATGCAGAATTGAGGGTAAAGATTGTGGAGGAGAGAGCAAAATTTGACAGAGATCCAAAGGCTTTTCGAGAGTCCTACATGCAAGAGCAGTTGAAGCTTCAGAACCAGATTTTTGAAGCTAGGAAACTGCTTCCTAAAGTTCAAATTGACCATGGTATTCGTGTTAAGATCTCACAAGTATGTTCAGAGCTGAATGTGGATGGCCTGAGGGGTGACATTGTGTCAAACAGGGCTGCCAAGGCTTTAGCTGCTTTGAAGGGAAGAGAAGAAGTAGCTACAGAAGATGTAATGACAGTCATCCCAAATTGCTTGAGACACCGACTTAGAAAGGATCCTTTGGAATCCATTGATTCTGGCTTGCTAGTTGTAGAAAAGTTTTATGAGGTATTTGGGTGA___ACAGGAAAGTGAGTCCTACTCTGGTTCAGTTCACTGTTCTAATTCTTTCTCAAGCTGGCCATGCCTGTCGAAGTCTCTTGCTTCAGGTCCACATGTTATGACTTTGGCCAGGTTCATTTGCCTGATTTTAAGATAGCAGGTTTGAATGACTGTATTAATGCCAAATCTTTTCACTTTGTGAACCCTAAATGAGTGGAATTTTTTTTATGACCAACACTACTGCTGATTCATTTAACTCAGCACTATACTTTCATAGGAAAACCATATATGCCATTTGCAAATTTGCAAATTTGTTGCAGAAAATCTAACTCTTATTTTCATGTTATAATGAAATTTCCAACTCTTGATTTGTTGCCATAAGAACAATGTTACACG

Fln Alignment:

sp_v1.1_unigene1571___MSGMLGAS---AALSMGSFNVSSPDRRVHIPPLASRSDYFLGSRRMLGCRMRLPKRRFQGTVAVNSVASEVISTDQVKKGVSKDTQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIRVVAADPFNXXXXXXXXXXXDXXXXXXXXXQLPSVMTKITMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYXXXXXXXXXXXXXXXXDAAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERAKFDRDPKAFRESYMQEQLKLQNQIFEARKLLPKVQIDHGIRVKISQVCSELNVDGLRGDIVSNRXXXXXXXXKGREEVATEDVMTVIPNCLRHRLRKDPLESIDSGLLVVEKFYEVF
O22436______________MASLLGTSSSAAAAILASTPLSSRSCKPAVFSLFPSSGQSQGRKFYGGIRVPVKKGRSQFHVAISNVATEINLLKNRVRNLLEESQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVISGDPFNSDPDDQEVMSAEVRDKLRSGQQLPISRTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRESYKAEQEKLQNQIDSARNALSAVTIDHDLRVKISKVCAELNVDGLRGDIVTNRAARALAALKGRDKVTPEDIATVIPNCLRHRLRKDPLESIDSGVLVVEKFYEVF

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
751		66		33	0.997452
805		88		11	0.923564
806		88	11		0.923564
807	11			88	0.923564
810	11	88			0.923564
813	88	11			0.923564
817			11	88	0.923564
819		11	88		0.923564
821		11	88		0.923564
976	66		33		1.0
990		16		83	0.994512
992		80		20	0.995493
1003		16		83	0.994512
1039	12	87			0.992554
1315	83	16			0.994512
1390		50		50	1.0
1534	85		14		0.993533
1553	16		83		0.994512
1650		11		77	0.968132
1687	83	16			0.994512
1688		16	83		0.994512
1689		16	83		0.994512
1690		16		83	0.994512
1691	16			83	0.994512
1701	75	25			0.996473
1702	75	25			0.996473
1703		25	75		0.996473
1704	75	25			0.996473
1708	33	66			0.997452
1710	33	66			0.997452
1711		66		33	0.997452
1713			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain