SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1565

Length: 2227 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene1565
ATGGGTGGTGAAAATTAGACAGATAGTTCATTTTCCCAAGGTCCATATTCCCCGCTTGCATTGGATTAAGTCCAAGAATCAATGCAACCACCCTGCATTGTTTTCCAGTACTGTACTACAGTGGCCTAGATGGAGTCCTAACACACCAACCCACTCTGGAAGTGCTGTGCTTGGAGTATGAACAGTAATTTTATAGACATTCAAGAGGCTATTTGCTGATCATATTGCCATGGAACCATCAAGAGATGTTCAAGAGGCCAGTTTCAGACACCAGGTTTTAGCAGAGCAGCCAGCAATGGAGGAAAGTAGTGGAGCAGGGGATCAAGTAATAAGAGAAGTGGTTTCAATCCCACAGACCCCAAAGGGCAGTGCCACTCCCAATGGCACACGTTCCCTCACCATAGCAATCATGTGTCCACGGCACAGTCCTACGCAATAACACCTGCCGGAACTCGGCCTGCTTCAGCATTGGCATCTCCTTCTATGTCAAGGTCTCCTCTACTCAAAACACCGAAGACCCCCAGGACTCCTAGAACTCCTAGGACTCCATGGACCCCCTCACTCAGTCCAATTGGGACTCCGATGAGGAGGGTGCTGACAAATATGAAGGCTTATCTGGAAGATATGGGTCATATCACAAAGTTAAATCCTCAGGATGCTTGGTTACCCATCACAGAATCTAGAAATGGAAATGCTTACTATTCGGCTTTCCATAATCTCAATGCTGGCATTGGGTTCCAGGCCTTGGTTCTGCCCGTGTCTTTCACATTTTTGGGATGGACATGGGGAATCATCTCTCTCTTGGCAGCATATATATGGCAACTGTATACTTTATGGCTTCTGATTAGATTACATGAATCTGTGCCGGGGAAACGATACAACCGATATGTGGAGCTTGCTAAAGCTGCTTTTGGTGAGAAGCTGGGTGCCTGGCTTTCCATTTTTCCGACCCTTTATCTATCAGCAGGCACTGCAACAGCTTTAATCATCGTTGGTGGGGGGTCAATGAAGCTATTTTTCCAAATAGTTTGTGGCACAATTTGTCAATCCAATCCACTAACAACAATTGAGTGGTATTTGGTATTTGCATGCTTTGCGCTTGTTCTCTCTCAACTGCCAAATCTCAACTCCATTGCATGGCTTTCCTTGATTGGAGCAATAACTGCTGTGACCTACACTACACTCATTTGGGGTTTGTCAGTAAGCAAGCCCAGGCCAATGGGCATCTCTTATGACCCACTCAAGTTGAAATCTGATGCTGCAACAAACTTTGCAATCTTGAATGCATTGGGTGCTATAACTTTTGCCTTCAGAGGCCACAATCTCGTCCTTGAGATTCAGGCCACAATGCCATCAAGCCTCAAACATCCAGCGCATGTACCAATGTGGAGAGGAGCTAAGGCTGCTTATGTATTGATTGCTCTCTGTTTGTTCCCTCTTGCAATAGGAGGATACTGGGCCTATGGCAACATGATACCTCAAGGAGGAATTTTAAATGCTTTATATGGATTCCACAATCAAGATATAGCACGGGGACTTCTGGGCCTAACGTTTCTTCTCGTTGTCATCAATTGCCTAAGCAGCTTTCAAATTTACTCCATGCCCATGTTTGACCTTGCTGAAGCAGGATACATCAACTCGACCAACAAACCCTGTCCTCAGTGGCTTCGTTCTGGGTTTCGTATTGTATATGTGTTCTTTGCCTTCTTTGTTGGAATTGCACTTCCCTTCCTTACAAGCTTAGCTGGTTTGTTAGGAGGGATTACACTGCCAGTGACCTTTGTGTACCCTTGTTTCATGTGGTTATTCCTCAAGAAGCCTGAAAAATACAGTGCTAACTGGTATTTAAATTGGGGACTCGGGATATTTGGCTCTATATTGAGCATAGCATTTTCAGTTGGGGGGATTTGGAGTATTGTTGACAATGGCTTAAAGCTTAAGTTCTTCAAGCCAAGCTAACCATCGAGGAGGTTCCATCTTCAATCCATTGGATTTCCAAGATTCAGCCATAATATCATAGGTTTCTATGTTTTTCTTTTGACTTGTCATTCTAGGTGATAAGAGTCCATATAAGACTGCAGGCATTATGCAGTAGACACAGTTAATATGTATGCCAATGCTTGTTCTATGTAGAAGCATGGTGTGCATCCTAGGCAAAATGTTTAGTGGGCTTTCCCAATTCAAACGCAAGGTTTGGGATGCAAGCTTCCAAGTTGTTGTGTCAACA

Ace file of the UniGene sp_v1.1_unigene1565

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lysine histidine transporter-like 8 n=5 Tax=rosids RepID=LHTL8_ARATH	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	amino acid	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg:

Fln protein: MSRSPLLKTPKTPRTPRTPRTPWTPSLSPIGTPMRRVLTNMKAYLEDMGHITKLNPQDAWLPITESRNGNAYYSAFHNLNAGIGFQALVLPVSFTFLGWTWGIISLLAAYIWQLYTLWLLIRLHESVPGKRYNRYVELAKAAFGEKLGAWLSIFPTLYLSAGTATALIIVGGGSMKLFFQIVCGTICQSNPLTTIEWYLVFACFALVLSQLPNLNSIAWLSLIGAITAVTYTTLIWGLSVSKPRPMGISYDPLKLKSDAATNFAILNALGAITFAFRGHNLVLEIQATMPSSLKHPAHVPMWRGAKAAYVLIALCLFPLAIGGYWAYGNMIPQGGILNALYGFHNQDIARGLLGLTFLLVVINCLSSFQIYSMPMFDLAEAGYINSTNKPCPQWLRSGFRIVYVFFAFFVGIALPFLTSLAGLLGGITLPVTFVYPCFMWLFLKKPEKYSANWYLNWGLGIFGSILSIAFSVGGIWSIVDNGLKLKFFKPS*

Protein Length: 493

Fln nts: ATGGGTGGTGAAAATTAGACAGATAGTTCATTTTCCCAAGGTCCATATTCCCCGCTTGCATTGGATTAAGTCCAAGAATCAATGCAACCACCCTGCATTGTTTTCCAGTACTGTACTACAGTGGCCTAGATGGAGTCCTAACACACCAACCCACTCTGGAAGTGCTGTGCTTGGAGTATGAACAGTAATTTTATAGACATTCAAGAGGCTATTTGCTGATCATATTGCCATGGAACCATCAAGAGATGTTCAAGAGGCCAGTTTCAGACACCAGGTTTTAGCAGAGCAGCCAGCAATGGAGGAAAGTAGTGGAGCAGGGGATCAAGTAATAAGAGAAGTGGTTTCAATCCCACAGACCCCAAAGGGCAGTGCCACTCCCAATGGCACACGTTCCCTCACCATAGCAATCATGTGTCCACGGCACAGTCCTACGCAATAACACCTGCCGGAACTCGGCCTGCTTCAGCATTGGCATCTCCTTCT_-_ATGTCAAGGTCTCCTCTACTCAAAACACCGAAGACCCCCAGGACTCCTAGAACTCCTAGGACTCCATGGACCCCCTCACTCAGTCCAATTGGGACTCCGATGAGGAGGGTGCTGACAAATATGAAGGCTTATCTGGAAGATATGGGTCATATCACAAAGTTAAATCCTCAGGATGCTTGGTTACCCATCACAGAATCTAGAAATGGAAATGCTTACTATTCGGCTTTCCATAATCTCAATGCTGGCATTGGGTTCCAGGCCTTGGTTCTGCCCGTGTCTTTCACATTTTTGGGATGGACATGGGGAATCATCTCTCTCTTGGCAGCATATATATGGCAACTGTATACTTTATGGCTTCTGATTAGATTACATGAATCTGTGCCGGGGAAACGATACAACCGATATGTGGAGCTTGCTAAAGCTGCTTTTGGTGAGAAGCTGGGTGCCTGGCTTTCCATTTTTCCGACCCTTTATCTATCAGCAGGCACTGCAACAGCTTTAATCATCGTTGGTGGGGGGTCAATGAAGCTATTTTTCCAAATAGTTTGTGGCACAATTTGTCAATCCAATCCACTAACAACAATTGAGTGGTATTTGGTATTTGCATGCTTTGCGCTTGTTCTCTCTCAACTGCCAAATCTCAACTCCATTGCATGGCTTTCCTTGATTGGAGCAATAACTGCTGTGACCTACACTACACTCATTTGGGGTTTGTCAGTAAGCAAGCCCAGGCCAATGGGCATCTCTTATGACCCACTCAAGTTGAAATCTGATGCTGCAACAAACTTTGCAATCTTGAATGCATTGGGTGCTATAACTTTTGCCTTCAGAGGCCACAATCTCGTCCTTGAGATTCAGGCCACAATGCCATCAAGCCTCAAACATCCAGCGCATGTACCAATGTGGAGAGGAGCTAAGGCTGCTTATGTATTGATTGCTCTCTGTTTGTTCCCTCTTGCAATAGGAGGATACTGGGCCTATGGCAACATGATACCTCAAGGAGGAATTTTAAATGCTTTATATGGATTCCACAATCAAGATATAGCACGGGGACTTCTGGGCCTAACGTTTCTTCTCGTTGTCATCAATTGCCTAAGCAGCTTTCAAATTTACTCCATGCCCATGTTTGACCTTGCTGAAGCAGGATACATCAACTCGACCAACAAACCCTGTCCTCAGTGGCTTCGTTCTGGGTTTCGTATTGTATATGTGTTCTTTGCCTTCTTTGTTGGAATTGCACTTCCCTTCCTTACAAGCTTAGCTGGTTTGTTAGGAGGGATTACACTGCCAGTGACCTTTGTGTACCCTTGTTTCATGTGGTTATTCCTCAAGAAGCCTGAAAAATACAGTGCTAACTGGTATTTAAATTGGGGACTCGGGATATTTGGCTCTATATTGAGCATAGCATTTTCAGTTGGGGGGATTTGGAGTATTGTTGACAATGGCTTAAAGCTTAAGTTCTTCAAGCCAAGCTAA___CCATCGAGGAGGTTCCATCTTCAATCCATTGGATTTCCAAGATTCAGCCATAATATCATAGGTTTCTATGTTTTTCTTTTGACTTGTCATTCTAGGTGATAAGAGTCCATATAAGACTGCAGGCATTATGCAGTAGACACAGTTAATATGTATGCCAATGCTTGTTCTATGTAGAAGCATGGTGTGCATCCTAGGCAAAATGTTTAGTGGGCTTTCCCAATTCAAACGCAAGGTTTGGGATGCAAGCTTCCAAGTTGTTGTGTCAACA

Fln Alignment:

sp_v1.1_unigene1565___RNGNAYYSAFHNLNAGIGFQALVLPVSFTFLGWTWGIISLLAAYIWQLYTLWLLIRLHES---VPGKRYNRYVELAKAAFGEKLGAWLSIFPTLYLSAGTATALIIVGGGSMKLFFQIVC----GTICQSNPLTTIEWYLVFACFALVLSQLPNLNSIAWLSLIGAITAVTYTTLIWGLSVSKPRP-------MGISYDPLKLKSDAATNFAILNALGAITFAFRGHNLVLEIQATMPSSLKHPAHVPMWRGAKAAYVLIALCLFPLA-IGGYWAYGNMIPQGGILNALYGFHNQDIARGLLGLTFLLVVINCLSSFQIYSMPMFDLAE---------AGYIN-STNKPCPQW-------LRSGFRIVYVFFAFFVGIALPFLTSLAGLLGGITL-PVTFVYPCFMWLFLKKPEKYSANWYLNWGLGIFGSILSIAFSVGGIWSIVDNGLKLKFFKP
B8LQS2______________RTGTLWTASAHIITAVIGSGVLSLAWSMAQLGWIAGPAVLIAFSFITLYTSALLADCYRSLDPVNGKRNYNYMAAVKANLGG-LQTWLCGFTQYSNLYGTAIGYTITASTSMAAINRSDCFHSKGKNYPCHPSNN-PFMIMFGIVQLILSQIPDFDQLWWLSIVAAVMSFSYSSIGLGLSIGKVAEGNFHGTLTGVTVGTI---TGAQKVWQTFQALGDIAFAYSYSMILIEIQDTLRSP---PAENKTMKKATVLGVSVTTLFYTLSGCFGYAAFGNSAP-GNLLTG-FGFYN---PFWLVDFANACVVVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIAQKKIRRFTTKWMLLQTLSVVSFIVSLAAAAGSIEGIIQD---LKSYKP

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
305	66		33		0.997452
306	66		33		0.997452
308			33	66	0.997452
1140		87		12	0.992554
1158	14		85		0.993533
1398	16		83		0.994512
1405	14		85		0.993533
1451		16	83		0.994512
1490			80	20	0.995493
1556		12		87	0.992554
1567		12		87	0.992554
1681	12		87		0.992554
1799	10			90	0.90298
1801		90	10		0.90298
1802	90		10		0.90298
1803			10	90	0.90298
1867			90	10	0.90298
1877			11	88	0.923564
1908	14		85		0.993533
1909	14		85		0.993533
1911	14			85	0.993533
1965		87		12	0.992554
2054			20	80	0.995493
2055		80	20		0.995493
2056			20	80	0.995493
2057	80		20		0.995493
2097			16	83	0.994512
2111	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain