SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1563

Length: 2293 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1563
CGTCGTGACCTTGGCTGTCACTCAGGGAACGCCACTGTCAGCGGAGAAAAGACAAAATTGTATCTGATTAAGCCTACAAAAAATGACATGCATTGATAAAATAAAATTTGAAGTACCTGCAACCTTATATGACGTCGTGACCTTGGCTGTCACTCAGGTTCTCGGGACTAGAGTTGACTCAGAGTTGATTTTATACAGACATGGAAGATGTATATATCCTCCATGTGCTCCATAGATTTTTCTCTCTGCAACAATTGATAGCGAATCGAGCTGCACTGCAAGCAAGATGGGTATGGATTGGGGATATGCTTATTTCTGCAATGTAGTTAAAAATTTATGAATTAGGTTGCATATTCAGCTGTAAAAGAGTGAGTTGGTATCGAGTGGAACCTCTCTGAAATCATTGTTCATGCCATGCTGAATTAATATATTAACAGACACGGTCTGTTATGAAAAATTAATATTGGAAGGAACATCTGTCTGCTATTATAGCAAGAGCATTGCTTGTTCCAGGTCCAAGGAAATGCCATGTCTGTGGATATATTCAGAAGTATTTTGTTGGTATGAGCAGCATTCTGAGTTTATTGATGATGTCTTTATGACTTTAGAAATATTGGATAGCATTCAGTGCAGTTGGTGGGGAAGGGTAGTTGTGTGAGTTTTTTTTGTATGAGCAATGGGGTCCCTTGAAGGTAATGGTTACGAGTCATATGAAAGTAGGCATGATAATGGTAATGGCAATAACAATGCTTCTACCTTTGAGTTCCCCAAGGGTGGTGGTGGGGATAGGGCAATTCATCACAGGCCTGTTCTAGGGTCACATTCTAAGCCAACCCCTTCAAAATGGGATGATGCCCAGAAGTGGTTGGTCAGTCTCTCTTCAGAAGGAGGAGATCATGGTTATGTTAAAAATAAGTCCAAGACTTCCGATGCACAGAGAAAAATAAGCTTTCTGCCTCGTCAGGGCAAATCCTCTGCACCCAATGCCTCGGAAGCTTTGTCTGTTCCTTCCAGTTTGCCTGCAGCTATGGATGAAGAGGAAGCGAGATTAAATCAGGATGAGGGAGATACCAAGAAGATTGATTATGGCAAGTCCATGAGACCGATTGATAAGCCCATCGCAGATCCGGTCAGTGAACACTTATCTTACATCCCACCAACTTCAAATGTGAGATCAGTTTCCATGAGGGATATGGGAACAGAAATGACCCCTATGGCAAGCCAAGAACCTTCAAGAACTGGAACCCCTCTCAGAGCCACAACACCTTCATCTAGGAGCCCTGTTACTTCACGGCCATCTACTCCAGGAAGATGCACAACACCAACGGAGGCAATAGAAAATTATCAATTGGGCCTGAAAGACCATCATGATTTGTCGGAGAAGCAAGTGCATGAGAAGACTAGAAGGGAAATTATGGCTCTAGGAGCACAGTTGGGGAAGTCAAATATCATGGCATGGGCTAGTAAAGAAGAAGAAGAGCAAGATGCTTCTAAATCACTCAAGACTAATGATATGGAACATACTAAACTGAATGCCCTAGAGGCTAGGGCTGCAGCATGGGAGGAGGCAGAGCAGGTTAAATACATGGCCAGGTATAAACGTGAAGAAATCAAAATACAAGCCTGGGAAAGTAATCAAAAAATAAAAGCAGAAGCTGAAATGAAGAGAATAGAGGCAAAAACTGGAAGGATGAAATCTCGTGCCCATGAGAGACTAATGAACAAGTTGGAAAGTATAAAGCGCAGAGCAGAAGAGCAGCGTGCAGATGCAGAAGCCAAAATAAGCGAGCAGGCCGTCAAAACAGCACACAAAGCTGATTATATCCGTCAAACTGGTCATGTGCCTTCCTCATTCTTTTCTTGTAACTTACGTGCCTTGTGCTGTGGCTTTTTCCCTTAATGGGTTGTCCCTATGTCATCATGTTTCCCATCTTATCATCAGCCTTATTCCTCTCCTTACTGATATACTTTTTGAGAGAAAATATCTATACCCTTCTGTTGTTCAAGGCTCCTCACATTTGTTTTCACAGCATTTTCACATTTCCCTGATCCAACTTTGTTGCATACGCCAAGCTCTTTATGTGCATCTCATGGGCATTGAGTCTTCATGGCTCAAAAAATGTATATTGCATCAATCTTTATTACCCTTAACAAATGTATATTTAGGCCCTTTGTTTCTCCAGCATCTTGCTAAGTTTTTGGTTTTTTCAAGAGTGAAGAAGTGACTGAATTGAAAATATCGAAAAATATGTGGTGCTTGAAATTTGATATTATTATTTTGTGGCATGATCAC

Ace file of the UniGene sp_v1.1_unigene1563

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to remorin family protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	protein	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	56%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADM1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 408 - 429

Fln protein: MGSLEGNGYESYESRHDNGNGNNNASTFEFPKGGGGDRAIHHRPVLGSHSKPTPSKWDDAQKWLVSLSSEGGDHGYVKNKSKTSDAQRKISFLPRQGKSSAPNASEALSVPSSLPAAMDEEEARLNQDEGDTKKIDYGKSMRPIDKPIADPVSEHLSYIPPTSNVRSVSMRDMGTEMTPMASQEPSRTGTPLRATTPSSRSPVTSRPSTPGRCTTPTEAIENYQLGLKDHHDLSEKQVHEKTRREIMALGAQLGKSNIMAWASKEEEEQDASKSLKTNDMEHTKLNALEARAAAWEEAEQVKYMARYKREEIKIQAWESNQKIKAEAEMKRIEAKTGRMKSRAHERLMNKLESIKRRAEEQRADAEAKISEQAVKTAHKADYIRQTGHVPSSFFSCNLRALCCGFFP*

Protein Length: 409

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGAACGCCACTGTCAGCGGAGAAAAGACAAAATTGTATCTGATTAAGCCTACAAAAAATGACATGCATTGATAAAATAAAATTTGAAGTACCTGCAACCTTATATGACGTCGTGACCTTGGCTGTCACTCAGGTTCTCGGGACTAGAGTTGACTCAGAGTTGATTTTATACAGACATGGAAGATGTATATATCCTCCATGTGCTCCATAGATTTTTCTCTCTGCAACAATTGATAGCGAATCGAGCTGCACTGCAAGCAAGATGGGTATGGATTGGGGATATGCTTATTTCTGCAATGTAGTTAAAAATTTATGAATTAGGTTGCATATTCAGCTGTAAAAGAGTGAGTTGGTATCGAGTGGAACCTCTCTGAAATCATTGTTCATGCCATGCTGAATTAATATATTAACAGACACGGTCTGTTATGAAAAATTAATATTGGAAGGAACATCTGTCTGCTATTATAGCAAGAGCATTGCTTGTTCCAGGTCCAAGGAAATGCCATGTCTGTGGATATATTCAGAAGTATTTTGTTGGTATGAGCAGCATTCTGAGTTTATTGATGATGTCTTTATGACTTTAGAAATATTGGATAGCATTCAGTGCAGTTGGTGGGGAAGGGTAGTTGTGTGAGTTTTTTTTGTATGAGCA_-_ATGGGGTCCCTTGAAGGTAATGGTTACGAGTCATATGAAAGTAGGCATGATAATGGTAATGGCAATAACAATGCTTCTACCTTTGAGTTCCCCAAGGGTGGTGGTGGGGATAGGGCAATTCATCACAGGCCTGTTCTAGGGTCACATTCTAAGCCAACCCCTTCAAAATGGGATGATGCCCAGAAGTGGTTGGTCAGTCTCTCTTCAGAAGGAGGAGATCATGGTTATGTTAAAAATAAGTCCAAGACTTCCGATGCACAGAGAAAAATAAGCTTTCTGCCTCGTCAGGGCAAATCCTCTGCACCCAATGCCTCGGAAGCTTTGTCTGTTCCTTCCAGTTTGCCTGCAGCTATGGATGAAGAGGAAGCGAGATTAAATCAGGATGAGGGAGATACCAAGAAGATTGATTATGGCAAGTCCATGAGACCGATTGATAAGCCCATCGCAGATCCGGTCAGTGAACACTTATCTTACATCCCACCAACTTCAAATGTGAGATCAGTTTCCATGAGGGATATGGGAACAGAAATGACCCCTATGGCAAGCCAAGAACCTTCAAGAACTGGAACCCCTCTCAGAGCCACAACACCTTCATCTAGGAGCCCTGTTACTTCACGGCCATCTACTCCAGGAAGATGCACAACACCAACGGAGGCAATAGAAAATTATCAATTGGGCCTGAAAGACCATCATGATTTGTCGGAGAAGCAAGTGCATGAGAAGACTAGAAGGGAAATTATGGCTCTAGGAGCACAGTTGGGGAAGTCAAATATCATGGCATGGGCTAGTAAAGAAGAAGAAGAGCAAGATGCTTCTAAATCACTCAAGACTAATGATATGGAACATACTAAACTGAATGCCCTAGAGGCTAGGGCTGCAGCATGGGAGGAGGCAGAGCAGGTTAAATACATGGCCAGGTATAAACGTGAAGAAATCAAAATACAAGCCTGGGAAAGTAATCAAAAAATAAAAGCAGAAGCTGAAATGAAGAGAATAGAGGCAAAAACTGGAAGGATGAAATCTCGTGCCCATGAGAGACTAATGAACAAGTTGGAAAGTATAAAGCGCAGAGCAGAAGAGCAGCGTGCAGATGCAGAAGCCAAAATAAGCGAGCAGGCCGTCAAAACAGCACACAAAGCTGATTATATCCGTCAAACTGGTCATGTGCCTTCCTCATTCTTTTCTTGTAACTTACGTGCCTTGTGCTGTGGCTTTTTCCCTTAATGGGTTGTCCCTATGTCATCATGTTTCCCATCTTATCATCAGCCTTATTCCTCTCCTTACTGATATACTTTTTGAGAGAAAATATCTATACCCTTCTGTTGTTCAAGGCTCCTCACATTTGTTTTCACAGCATTTTCACATTTCCCTGATCCAACTTTGTTGCATACGCCAAGCTCTTTATGTGCATCTCATGGGCATTGAGTCTTCATGGCTCAAAAAATGTATATTGCATCAATCTTTATTACCCTTAACAAATGTATATTTAGGCCCTTTGTTTCTCCAGCATCTTGCTAAGTTTTTGGTTTTTTCAAGAGTGAAGAAGTGACTGAATTGAAAATATCGAAAAATATGTGGTGCTTGAAATTTGATATTATTATTTTGTGGCATGATCAC

Fln Alignment:

sp_v1.1_unigene1563___TSNVRSVSMRDMGTEMTPMASQEPSRTGTPLXXXXXXXXXXXXXXXXXXXXCTTPTEAIENYQLGLKDHHDLSEKQVHEKTRREIMAL--GAQLGK--SNIMAWASKEEEEQDASKSLKTNDMEHTKLNXXXXXXXXXXXXXQVKYMARYKREEIKIQAWESNQKIKAEAEMKRIEAKTGRMKSRAHERLMNKLESIKXXXXXXXXXXXXKISEQAVKTAHKADYIRQTGHVPSSFFSC
D5ADM1______________TEVIPAVQHRDMGTEMTPLGSSRTSRCHTPVKNGSPARHN------------TPASRSALINSAGI----DIGELEKCHFANLELQGLPSGIQFNSVDKSVSTWSSREEEEEDVSKSLRHFDMGDCKKSIVEIRAAAWEEAERSKCFTRYQREEARIEAWINLQGAKAEAETKKLEVKIEKMRSHLEEKLMKKMAGAHKRAEEWRAAAKAQHAEQILKSAERAERMRRDGNVPFNVSTC

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
1059	12		87		0.992554
1080			88	11	0.923564
1081	88		11		0.923564
1082			11	88	0.923564
1083			11	88	0.923564
1114	88			11	0.923564
1126	11		88		0.923564
1159		83		16	0.994512
1160		83	16		0.994512
1161	83		16		0.994512
1162	83		16		0.994512
1180			90	10	0.90298
1181			10	90	0.90298
1182			10	90	0.90298
1183			10	90	0.90298
1224		90		10	0.90298
1251			12	87	0.992554
1393		83		16	0.994512
1572		25	75		0.996473
1573	25		75		0.996473
1574	75		25		0.996473
1653	85		14		0.993533
1654	85		14		0.993533
1655	85		14		0.993533
1691		87	12		0.992554
1767	12		87		0.992554
1900		7	14	78	0.999974
1901			21	78	1.0
1903		85		14	0.999981
1904		78	21		1.0
1906		14	7	78	0.999974
1908	78	21			1.0
1910			80	6	0.999961
1911		13	80	6	0.999961
1912	13	6	80		0.999961
1919		46		53	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1467	1479	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain