SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1558

Length: 2266 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene1558
ATTCCTGTCTATTGCAGAGGAGACTTTGACGCAGTTTCTTTCAAAGGCTACAGAGACTGCTGTTGATTGGATCCAGATGCCCGGGATGAAGCCTGGTCCGGATTCTATAGGCATTGTGACTATTTCTAACAGTTGCACTGGAGTTGCTGCACGAGCTTGTGGCTTTGCAGGTCTCGAACCTTCAAAGGTCGCAGATATTCTTAAAGATCGTCCCGCTTGGCTTCATGATTGTCGGCGCCTGGATGTTTTGACTGCCTTTCCTACGGGAAAAGGAGGGGCAGTCGAGCTTCTATACACGCAAATGTATGCTCCAACCACATTAGCCCCTGCTCGGGACTTATTGACTCTGAGATACACATCATTGTTGGAAGATGGCAGTCTTGTGGTTTGTGAAAGGTCATTGACTGGTACTCAGAGCGGTCCAAACATGCCGTCTGTCCAGCACTTTGAAGAGCACAGATGCTTCCCAGTGGTTATTTGATACGTCCCTGTGAAGGTGGAGGCTGTATAATTCATATTGTTGATCATATGGACTTGGAGCCTTGGAGTGTTCCTGAAGTTATACGCCCACTTTATGAATCATCTGCTGTACTGGCCCAAAAAATGACCATTACGGCATTGAGACATTTGCGTCAAGTAGCTCAAGAGGTCTCAGGTGAAGTGGTTCTTGGTTGGGGTAGGCAGCCAGCTGCTCTGCGGGCATTTAGCCAGAGACTGTGCAGGGGTTTCAATGATGCTGTGAATGGCTTTGCAGATGATGGTTGGTCTTTGTTGGGTAGTGATGGGGTGGAGGACGTGATCATTGCCATAAATTCATCTCCAAGCAAATTTTTAGGTTCTCAAATTGCTTCTTCTGATGGCCTTTCAGCTCTTAATGGGGGCATTATGTGTGCTAAGGCATCTATGCTATTACAGAATGTGCCTCCAGCACTACTTGTCCGCTTCTTGCGGGAACATCGCTCAGAGTGGGCTGATTGTAACATTGATGCTTATTCTTCAGCTACCATGAAAGCAAATGCTTACAATGTTCCAGGTTCACTGGGAGGCATTACAGGGAGTCAAGTTATCCTTCCACTGGCACATACTGTGGAACATGAAGAGTTCTTGGAAGTCATCAAACTCGAGGGACATGGTCTCACACACGAAGAAGCTTTGCTGTCTAAGGATATGTTTCTGTTACAGCTCTGTAGCGGAATAGATGAACATGCAGCTGGATTCTGTTCTCAACTTGTGTTTGCACCAATTGATGCATCTTTTGCTGATGATGCTCCTCTGCTGCCCTCTGGTTTCCGAGTAATTCCTCTAGAATCTGGATCAGATGTTTCTCCTCCAAACCGAACTTTGGATCTAGCTTCTGCTCTTGAGATTGGATCAGCTGGAACTCGAGCAAGTGGTGATTGTGGTGATAGCCCATGCAATCTGAGATCTGTATTGACTATTGCTTTCCAATTCACTTATCAGAACAATGTGCGAGACAGTGTAGCAGCCATGACTCGCCAGTATGTCCGTAATGTTATAGCATCTGTTCAGAGGGTTGCCATTGCACTAGCTCCTTCTCAACAGAGTCCTCATCTAGGACCAAGGCTACCTCCTGGTACCCCAGAAGCACTTACGCTTACTCGTTGGATTTTTCAGAGCTACAGGATGCATCTAGGACTAGAGCTTATTGGAGATAATTCTGAACCCAACGAGTCTGTGTTGAAACTCCTGTGGCACCATTCAGATGGAATCATGTGTTGTTCCTGGAAGCCATTGCCAGTTTTCACATTTGCAAATCAGGCAGGGCTTGATATGCTGGAGACAACCTTGGTTGCTCTGCAAGATATATCATTGGAAAAAATACTTGATGAGAATGGTCGCAAGAGGCTGTGCTCAGATTTTACGCAAATTATGCAGCAGGGCTATGCTTATCTGCCCTCTGGAATATGCATTTCTAGTATGGGCAGGCCTGTTTCATATGATCGAGCTATAGCGTGGAAGGTACTTAATGATGAAGACGTTATTCATTGCATAGCTTTCATGTTCTTGAATTGGTCTTTTGTGTGACCAGTTTTGGGATGTAAATTCAATAGAAAAGCCATGTTGGGATCTTATCATCCAAACAAATGGGTTTACTGCCTTTTGAAGCTTTTGTAACTTTAAGTTTTATGCCAGCTGGACAGAACAACCCTTCTAAAAGATTTTAAAGGCTCTAATGGATCATGTAAGGAGCATCTTGTGGATGCATTTTCTTTAATTAAAGGACAGACGCTTAGTTACTGAAGCC

Ace file of the UniGene sp_v1.1_unigene1558

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class III HD-Zip protein HDZ33 n=3 Tax=Pinaceae RepID=Q0Q419_PINTA	-	-	99%
FL-Next	tr=Class III HD-Zip protein HDZ33; Pinus taeda (Loblolly pine).	-	-	94%
Blast2go	homeodomain-leucine zipper trancription factor hb-3	-	-	90%

Source	InterPros	Term	Type	Identity
Blast2go	Lipid-binding START	IPR002913	-	90%
Blast2go	MEKHLA	IPR013978	-	90%
Blast2go	START-like domain	IPR023393	-	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q0Q419

Fln msg: Overlapping hits, possible frame ERROR between 469 and 451, your sequence is shorter than subject: 682 - 840

Fln protein: FLSIAEETLTQFLSKATETAVDWIQMPGMKPGPDSIGIVTISNSCTGVAARACGFAGLEPSKVADILKDRPAWLHDCRRLDVLTAFPTGKGGAVELLYTQMYAPTTLAPARDLLTLRYTSLLEDGSLVVCERSLTGTQSGPNMPSVQHFxxxxxxxxGYLIRPCEGGGCIIHIVDHMDLEPWSVPEVIRPLYESSAVLAQKMTITALRHLRQVAQEVSGEVVLGWGRQPAALRAFSQRLCRGFNDAVNGFADDGWSLLGSDGVEDVIIAINSSPSKFLGSQIASSDGLSALNGGIMCAKASMLLQNVPPALLVRFLREHRSEWADCNIDAYSSATMKANAYNVPGSLGGITGSQVILPLAHTVEHEEFLEVIKLEGHGLTHEEALLSKDMFLLQLCSGIDEHAAGFCSQLVFAPIDASFADDAPLLPSGFRVIPLESGSDVSPPNRTLDLASALEIGSAGTRASGDCGDSPCNLRSVLTIAFQFTYQNNVRDSVAAMTRQYVRNVIASVQRVAIALAPSQQSPHLGPRLPPGTPEALTLTRWIFQSYRMHLGLELIGDNSEPNESVLKLLWHHSDGIMCCSWKPLPVFTFANQAGLDMLETTLVALQDISLEKILDENGRKRLCSDFTQIMQQGYAYLPSGICISSMGRPVSYDRAIAWKVLNDEDVIHCIAFMFLNWSFV*

Protein Length: 683

Fln nts: ATTCCTGTCTATTGCAGAGGAGACTTTGACGCAGTTTCTTTCAAAGGCTACAGAGACTGCTGTTGATTGGATCCAGATGCCCGGGATGAAGCCTGGTCCGGATTCTATAGGCATTGTGACTATTTCTAACAGTTGCACTGGAGTTGCTGCACGAGCTTGTGGCTTTGCAGGTCTCGAACCTTCAAAGGTCGCAGATATTCTTAAAGATCGTCCCGCTTGGCTTCATGATTGTCGGCGCCTGGATGTTTTGACTGCCTTTCCTACGGGAAAAGGAGGGGCAGTCGAGCTTCTATACACGCAAATGTATGCTCCAACCACATTAGCCCCTGCTCGGGACTTATTGACTCTGAGATACACATCATTGTTGGAAGATGGCAGTCTTGTGGTTTGTGAAAGGTCATTGACTGGTACTCAGAGCGGTCCAAACATGCCGTCTGTCCAGCACTTTxxxxxxxxxxxxxxxxxxxxxxxxGGTTATTTGATACGTCCCTGTGAAGGTGGAGGCTGTATAATTCATATTGTTGATCATATGGACTTGGAGCCTTGGAGTGTTCCTGAAGTTATACGCCCACTTTATGAATCATCTGCTGTACTGGCCCAAAAAATGACCATTACGGCATTGAGACATTTGCGTCAAGTAGCTCAAGAGGTCTCAGGTGAAGTGGTTCTTGGTTGGGGTAGGCAGCCAGCTGCTCTGCGGGCATTTAGCCAGAGACTGTGCAGGGGTTTCAATGATGCTGTGAATGGCTTTGCAGATGATGGTTGGTCTTTGTTGGGTAGTGATGGGGTGGAGGACGTGATCATTGCCATAAATTCATCTCCAAGCAAATTTTTAGGTTCTCAAATTGCTTCTTCTGATGGCCTTTCAGCTCTTAATGGGGGCATTATGTGTGCTAAGGCATCTATGCTATTACAGAATGTGCCTCCAGCACTACTTGTCCGCTTCTTGCGGGAACATCGCTCAGAGTGGGCTGATTGTAACATTGATGCTTATTCTTCAGCTACCATGAAAGCAAATGCTTACAATGTTCCAGGTTCACTGGGAGGCATTACAGGGAGTCAAGTTATCCTTCCACTGGCACATACTGTGGAACATGAAGAGTTCTTGGAAGTCATCAAACTCGAGGGACATGGTCTCACACACGAAGAAGCTTTGCTGTCTAAGGATATGTTTCTGTTACAGCTCTGTAGCGGAATAGATGAACATGCAGCTGGATTCTGTTCTCAACTTGTGTTTGCACCAATTGATGCATCTTTTGCTGATGATGCTCCTCTGCTGCCCTCTGGTTTCCGAGTAATTCCTCTAGAATCTGGATCAGATGTTTCTCCTCCAAACCGAACTTTGGATCTAGCTTCTGCTCTTGAGATTGGATCAGCTGGAACTCGAGCAAGTGGTGATTGTGGTGATAGCCCATGCAATCTGAGATCTGTATTGACTATTGCTTTCCAATTCACTTATCAGAACAATGTGCGAGACAGTGTAGCAGCCATGACTCGCCAGTATGTCCGTAATGTTATAGCATCTGTTCAGAGGGTTGCCATTGCACTAGCTCCTTCTCAACAGAGTCCTCATCTAGGACCAAGGCTACCTCCTGGTACCCCAGAAGCACTTACGCTTACTCGTTGGATTTTTCAGAGCTACAGGATGCATCTAGGACTAGAGCTTATTGGAGATAATTCTGAACCCAACGAGTCTGTGTTGAAACTCCTGTGGCACCATTCAGATGGAATCATGTGTTGTTCCTGGAAGCCATTGCCAGTTTTCACATTTGCAAATCAGGCAGGGCTTGATATGCTGGAGACAACCTTGGTTGCTCTGCAAGATATATCATTGGAAAAAATACTTGATGAGAATGGTCGCAAGAGGCTGTGCTCAGATTTTACGCAAATTATGCAGCAGGGCTATGCTTATCTGCCCTCTGGAATATGCATTTCTAGTATGGGCAGGCCTGTTTCATATGATCGAGCTATAGCGTGGAAGGTACTTAATGATGAAGACGTTATTCATTGCATAGCTTTCATGTTCTTGAATTGGTCTTTTGTGTGACCAGTTTTGGGATGTAAATTCAATAGAAAAGCCATGTTGGGATCTTATCATCCAAACAAATGGGTTTACTGCCTTTTGAAGCTTTTGTAACTTTAAGTTTTATGCCAGCTGGACAGAACAACCCTTCTAAAAGATTTTAAAGGCTCTAATGGATCATGTAAGGAGCATCTTGTGGATGCATTTTCTTTAATTAAAGGACAGACGCTTAGTTACTGAAGCC

Fln Alignment:

sp_v1.1_unigene1558___FLSIAEETLTQFLSKATETAVDWIQMPGMKPGPDSIGIVTISNSCTGVAARACGFAGLEPSKVADILKDRPAWLHDCRRLDVLTAFPTGKGGAVELLYTQMYAPTTLAPARDLLTLRYTSLLEDGSLVVCERSLTGTQSGPNMPSVQHFExxxxxxSGYLIRPCEGGGCIIHIVDHMDLEPWSVPEVIRPLYESSAVLAQKMTITALRHLRQVAQEVSGEVVLGWGRQPAALRAFSQRLCRGFNDAVNGFADDGWSLLGSDGVEDVIIAINSSPSKFLGSQIASSDGLSALNGGIMCAKASMLLQNVPPALLVRFLREHRSEWADCNIDAYSSATMKANAYNVPGSLGGITGSQVILPLAHTVEHEEFLEVIKLEGHGLTHEEALLSKDMFLLQLCSGIDEHAAGFCSQLVFAPIDASFADDAPLLPSGFRVIPLESGSDVSPPNRTLDLASALEIGSAGTRASGDCGDSPCNLRSVLTIAFQFTYQNNVRDSVAAMTRQYVRNVIASVQRVAIALAPSQQSPHLGPRLPPGTPEALTLTRWIFQSYRMHLGLELIGDNSEPNESVLKLLWHHSDGIMCCSWKPLPVFTFANQAGLDMLETTLVALQDISLEKILDENGRKRLCSDFTQIMQQGYAYLPSGICISSMGRPVSYDRAIAWKVLNDEDVIHCIAFMFLNWSFV
Q0Q419______________FLSIAEETLTQFLSKATETAVDWIQMPGMKPGPDSIGIVTISNSCTGVAARACGFAGLEPSKVADILKDRPAWLHDCRRLDVLTAFPTGKGGAFELLYTQMYAPTTLAPARDLLTLRYTSLLEDGSLVVCERSLTGTQSGPNMPPVQHFVxxxxxxSGYLIRPCEGGGCIIHIVDHMDLEPWSVPEVIRPLYESSAVLAQKMTITALRHLRQVAQEVSGEVVLGWGRQPAALRAFSQRLCRGFNDAVNGFADDGWSLLGSDGVEDVIIAINSSPSKFLSSQIASSDGLSALNGGIMCAKASMLLQNVPPALLVRFLREHRSEWADCNIDAYSSATMKANAYNVPGSLGGITGSQVILPLAHTVEHEEFLEVIKLEGHGLTHEEALLSKDMFLLQLCSGIDEHAAGFCSQLVFAPIDASFADDAPLLPSGFRVIPLESGSDVSPPNRTLDLASALEIGSAGTRASGDCGDSPCNLRSVLTIAFQFTYQNNVRDSVAAMTRQYVRNVIASVQRVAIALAPSQQSPHIGPRLPPGTPEALTLTRWIFQSYRMHLGLELIGDNSEPNESVLKLLWHHSDGIMCCSWKPLPVFTFANQAGLDMLETTLVALQDISLEKILDENGRKRLCSDFTQIMQQGYAYLPSGICISSMGRPVSYDRAIAWKVLNDEDVIHCIAFMFLNWSFV

SNPs (tot: 3)

Position	A %	C %	G %	Probability
2200	14		85	0.993533
2201	14		85	0.993533
2214		25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain