SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1546

Length: 1979 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1546
CGTCGTGACCTTGGCTGTCACTCAGATGGTCCTGGGTGTTATGCCCGAAAATCAATCTTATAACTAAAAGAGCACTCCCCAGCGAGTAAGAATGTACATAAATTCCGCGATGATGATAACGTTTGAAAAAGTACATCCAGCCTTATGCCAATGTTGCTTCTATTGTAAGCCTTTAGCCATTCTGGTTTTGGTTTTGGTTTGATAGCTACCCAATCGTGTAAAAACGTGAATCGCATTTATTTGCGAATCCGCACATTCTGATTCTTCAAACACTCGCAATCTCTTTTCGTATGGTAAACGCTGTCGTTATCCATATCTGAAATGTTCAGACGCGAATGCGATATGAAGTTCCAACAATAAATGTTAAAGAGACTCTGATCCACGAGGGGCGTGTTGCAGTAGCCTACTCCCTTTCATGGTACCTGGCCCCTGGCCCCTATATAATTGACTGGAAATAATAAGAGGTACAATCCACAATGGGGCACAAGCAAACCACATTTACACAGGAACTCATTCTGTATGCTATAAGCGCCGCGGTAAGCTGCCTAGTTTTATTTGCAGGGTTGAAGCAGCTCGACCCCAACAGGGCCGCGGCAAAGAAGGCAGCCGACCGGAAGAAAGAGATTGCGAAGAAGCTAGGTCGACCCCTTGTAAAGACAAACCAGTATGAGGATGTAATAGCTTGTGATGTCGTCAATCCAGATGACATTGATGTGACCTTTGAGTCAATTGGAGGGCTTGATGACATTAAACAAGCATTGCACAAACTAGTTATTCTTCCATTACAGAGACCTGGCTTATTTTCCCATGGAAGGCTTTTGGGACCACAAAAAGGAGTATTGTTATATGGCCCACCAGGGACGGGGAAGACCTTGCTTGCTAAAGCAATAGCGAAAGAGTCAGGGGCTGTTTTTATCAATGTCAGGATAGCAAATCTCATGAGCAAATGGTTTGGTGATGCCCAAAAGCTTGTGTCTGCTGTATTCTCCCTGGCATATAAGCTTCAGCCTGCCATAATCTTTATTGACGAGGTTGATAGTTTTTTGGGTCAACGGCGTTCTTCAGAGCATGAAGTTGTGACAAATATGAAGACAGAGTTTATGGCATTGTGGGATGGATTCACCACTGATCAGAATGCTCGAGTTATGGTTCTTGCTGCGACAAATAGGCCCTGGGAACTTGATGAGGCAATCTTGCGCCGTCTTCCCCAAGCATTTGAAGTCCGAATGCCAAATTGTGCAGAGAGGGCAAAGATTCTCAAAGTAATTTTGAAGGGTGAAAACGTGGAGGATAATATTGACTTTGATCGTATAGCTAGGTTATGTGAAGGATACAGTGGTTCTGATTTAACAGAACTTTGCAAGCAAGCAGCATATATCCCAATCAGAGAGTTGTTGGATCAAGAAAAGGACGGCCAGCTAACTTCTCAGATGCCAAGACCCTTAAAGCATTCAGATTTGGAGAAGGTCCTTTCTGTTTCAAAATCATCCAGGGTTGTTGCAACTGAGTATTCAAATAGGAGACAATCTGAATTACAGTCAAGGTCAGGGCCATCAAGTGAGTATTCAGACGTTAGGCTATCCGATTTTCTGAAGTTTATTGCTGTGTTTGGCGGCAATTCTCGTAGAACAACTCCAGACCCTTGAAATAGAGATGAAGACCTTCGAGTTTGAGAGTTTTTTTATTCATGATAGTATCTCTTGTATTCATTTTGAACCACTGATGGTATCCTGCAGTTGTATTCATTGCCTGCCTTTTTTATGTTCACCGCTGCTGCTTTTTTGTGATATTCCATTTTTATTACATTTAATTAAATGATACATGAACTAGAAGGTGTTTGTTCATACTTCTTGGCTAAAGTAATAGAGAATTAATTTCTGACAAACTTGAGTACTGAAAGATAAGCAATCTCTAAATGATCATTTGAGATGCTTTAATAACATCAGTTTTACCTTTGCCTTTTTCTTGTTGTGGGACTT

Ace file of the UniGene sp_v1.1_unigene1546

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein MSP1, putative (EC:3.6.4.3)	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	85%
Blast2go	ATPase, AAA-type, core	IPR003959	-	85%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg:

Fln protein: MGHKQTTFTQELILYAISAAVSCLVLFAGLKQLDPNRAAAKKAADRKKEIAKKLGRPLVKTNQYEDVIACDVVNPDDIDVTFESIGGLDDIKQALHKLVILPLQRPGLFSHGRLLGPQKGVLLYGPPGTGKTLLAKAIAKESGAVFINVRIANLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRSSEHEVVTNMKTEFMALWDGFTTDQNARVMVLAATNRPWELDEAILRRLPQAFEVRMPNCAERAKILKVILKGENVEDNIDFDRIARLCEGYSGSDLTELCKQAAYIPIRELLDQEKDGQLTSQMPRPLKHSDLEKVLSVSKSSRVVATEYSNRRQSELQSRSGPSSEYSDVRLSDFLKFIAVFGGNSRRTTPDP*

Protein Length: 391

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGGTCCTGGGTGTTATGCCCGAAAATCAATCTTATAACTAAAAGAGCACTCCCCAGCGAGTAAGAATGTACATAAATTCCGCGATGATGATAACGTTTGAAAAAGTACATCCAGCCTTATGCCAATGTTGCTTCTATTGTAAGCCTTTAGCCATTCTGGTTTTGGTTTTGGTTTGATAGCTACCCAATCGTGTAAAAACGTGAATCGCATTTATTTGCGAATCCGCACATTCTGATTCTTCAAACACTCGCAATCTCTTTTCGTATGGTAAACGCTGTCGTTATCCATATCTGAAATGTTCAGACGCGAATGCGATATGAAGTTCCAACAATAAATGTTAAAGAGACTCTGATCCACGAGGGGCGTGTTGCAGTAGCCTACTCCCTTTCATGGTACCTGGCCCCTGGCCCCTATATAATTGACTGGAAATAATAAGAGGTACAATCCACA_-_ATGGGGCACAAGCAAACCACATTTACACAGGAACTCATTCTGTATGCTATAAGCGCCGCGGTAAGCTGCCTAGTTTTATTTGCAGGGTTGAAGCAGCTCGACCCCAACAGGGCCGCGGCAAAGAAGGCAGCCGACCGGAAGAAAGAGATTGCGAAGAAGCTAGGTCGACCCCTTGTAAAGACAAACCAGTATGAGGATGTAATAGCTTGTGATGTCGTCAATCCAGATGACATTGATGTGACCTTTGAGTCAATTGGAGGGCTTGATGACATTAAACAAGCATTGCACAAACTAGTTATTCTTCCATTACAGAGACCTGGCTTATTTTCCCATGGAAGGCTTTTGGGACCACAAAAAGGAGTATTGTTATATGGCCCACCAGGGACGGGGAAGACCTTGCTTGCTAAAGCAATAGCGAAAGAGTCAGGGGCTGTTTTTATCAATGTCAGGATAGCAAATCTCATGAGCAAATGGTTTGGTGATGCCCAAAAGCTTGTGTCTGCTGTATTCTCCCTGGCATATAAGCTTCAGCCTGCCATAATCTTTATTGACGAGGTTGATAGTTTTTTGGGTCAACGGCGTTCTTCAGAGCATGAAGTTGTGACAAATATGAAGACAGAGTTTATGGCATTGTGGGATGGATTCACCACTGATCAGAATGCTCGAGTTATGGTTCTTGCTGCGACAAATAGGCCCTGGGAACTTGATGAGGCAATCTTGCGCCGTCTTCCCCAAGCATTTGAAGTCCGAATGCCAAATTGTGCAGAGAGGGCAAAGATTCTCAAAGTAATTTTGAAGGGTGAAAACGTGGAGGATAATATTGACTTTGATCGTATAGCTAGGTTATGTGAAGGATACAGTGGTTCTGATTTAACAGAACTTTGCAAGCAAGCAGCATATATCCCAATCAGAGAGTTGTTGGATCAAGAAAAGGACGGCCAGCTAACTTCTCAGATGCCAAGACCCTTAAAGCATTCAGATTTGGAGAAGGTCCTTTCTGTTTCAAAATCATCCAGGGTTGTTGCAACTGAGTATTCAAATAGGAGACAATCTGAATTACAGTCAAGGTCAGGGCCATCAAGTGAGTATTCAGACGTTAGGCTATCCGATTTTCTGAAGTTTATTGCTGTGTTTGGCGGCAATTCTCGTAGAACAACTCCAGACCCTTGA___AATAGAGATGAAGACCTTCGAGTTTGAGAGTTTTTTTATTCATGATAGTATCTCTTGTATTCATTTTGAACCACTGATGGTATCCTGCAGTTGTATTCATTGCCTGCCTTTTTTATGTTCACCGCTGCTGCTTTTTTGTGATATTCCATTTTTATTACATTTAATTAAATGATACATGAACTAGAAGGTGTTTGTTCATACTTCTTGGCTAAAGTAATAGAGAATTAATTTCTGACAAACTTGAGTACTGAAAGATAAGCAATCTCTAAATGATCATTTGAGATGCTTTAATAACATCAGTTTTACCTTTGCCTTTTTCTTGTTGTGGGACTT

Fln Alignment:

sp_v1.1_unigene1546___MGHKQTTFTQELILYAISAAVSCLVLFAGLKQLDPNRXXXXXXXXXXXXXXXXLGRPLVKTNQYEDVIACDVVNPDDIDVTFESIGGLDDIKQALHKLVILPLQRPGLFSHGRLLGPQKGVLLYGPPGTGKTLLAKAIAKESGAVFINVRIANLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRSSEHEVVTNMKTEFMALWDGFTTDQNARVMVLAATNRPWELDEAILRRLPQAFEVRMPNCAERAKILKVILKGENVEDNIDFDRIARLCEGYSGSDLTELCKQAAYIPIRELLDQEKDGQLTSQMPRPLKHSDLEXXXXXXXXXXXXATEYSNRRQSELQSRSGPSSEYSDVRLSDFLKFIAVFGGNSRRTTPD
D5AE60______________MARKQTSFAQELILYAISAAVSCLVLVVGLKHLDPNKEATKKAAERKKEISKRFGRPRVLTNPYEDVIACDVINPDDIDVTFDSIGGLEKVKQELYELVILPLQRPNLFGHCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRSSEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIQRAKILEVILKGENVEDDIDYDYIASLCEGYSGSDLTDLCKQAAYFPIRELLEQEKSGQLTSETPRPLKQSDLEKVLSIGKTSRVAAAEYGNRKQTDMQSRLGSSSEQLGVSLTDFVKFLSLM-GSAQRTTPE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
359	85	14			0.993533
470	88			11	0.923564
471		88	11		0.923564
474			11	88	0.923564
478	87			12	0.992554
480	87		12		0.992554
504		28		71	1.0
525		28		71	1.0
921	20			80	0.995493
923	80		20		0.995493
924			20	80	0.995493
925		80	20		0.995493
1036		85		14	0.993533
1038	85		14		0.993533
1143	87		12		0.992554
1176	12		87		0.992554
1202	11			88	0.923564
1203			11	88	0.923564
1205		77	22		0.999999
1264	12			87	0.992554
1430	86		13		0.999973

SSRs (tot: 1)

Start position	End position	Sequence	Length
183	200	TGGTTT TGGTTT TGGTTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain