SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1538

Length: 1885 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1538

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF810 domain containing protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	Protein of unknown function DUF810	IPR008528	-	74%
Blast2go	Munc13 homology 1	IPR014770	-	74%
Blast2go	Mammalian uncoordinated homology 13, domain 2	IPR014772	-	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX86

Fln msg: your sequence is shorter than subject: 536 - 687

Fln protein: RRDLGCHSDSRRRSFKKQQNPPPALTVLANDIGDLARNEKEKFSPILKRWHPFAAGVAVATLHACYGRELKQFLSGVIALTPESVQVLEAADKLEKDLVQIAVEDSVDCEDGGKGVIREMPPYEVDSILADLSRTWIKERLERLREWVDRSLQQEDWTPVANKEKYSPSAVEVLRIVEETLDAFFELPLSQHSDLLPDLVAGLDRALQRYISQTKSGCGSKNSYVPLLPALTRCSTGSKFWKKKEKSSSHQKRKSQIVSMNSSEPMTLSQLCVRINTLHHIRTETEQLEKRISYGWKMDLFAKDNEKSKVSLAPIGSAPEAKFELSQPGSKEGIQQLCECTAYKVVFHDLSNVLWDGLYLGGTAGARIGPFLEQLESNLEIIADTVHTRVRTRVLTALMKACFDGFLLVLLGGGPSRAFSKSDSEIIEEDFVALKNLFKADGDGLPGELVEKAAMPVTDIFPLFSTNTEGLIENFRFAVCQANGLSSTKSKLPLPPTTGVWSPTEPNTLLRVLCYRNDEAATKFLKKTYGLPKRL*

Protein Length: 537

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTCAAGGAGGAGATCATTCAAAAAGCAGCAAAACCCTCCTCCTGCTCTAACAGTACTAGCAAACGACATTGGTGATCTTGCAAGAAATGAAAAGGAAAAATTTAGTCCCATCTTGAAGAGGTGGCACCCTTTTGCGGCAGGTGTGGCTGTTGCAACTCTCCATGCTTGCTATGGAAGAGAACTGAAGCAGTTCTTGTCAGGTGTCATAGCATTGACACCTGAAAGTGTTCAGGTATTGGAAGCTGCAGACAAGTTAGAGAAGGACCTTGTGCAGATCGCTGTTGAAGATTCAGTGGACTGTGAAGATGGAGGAAAGGGGGTCATAAGGGAAATGCCCCCGTATGAGGTTGACTCTATTCTGGCAGACTTGTCAAGAACATGGATCAAAGAAAGACTAGAGAGACTTCGCGAATGGGTGGACAGGAGCTTGCAACAAGAAGACTGGACTCCGGTGGCAAACAAGGAGAAATATTCACCCTCAGCTGTTGAAGTTTTAAGGATTGTTGAAGAGACACTGGATGCTTTCTTTGAATTGCCATTATCTCAACATTCAGATCTACTCCCAGATCTTGTGGCTGGACTTGACAGAGCTCTACAGCGCTATATTTCCCAAACTAAATCTGGATGTGGATCCAAGAACAGTTATGTTCCTCTTTTGCCAGCACTTACTAGATGCTCAACTGGGTCAAAGTTTTGGAAGAAAAAGGAAAAATCATCAAGCCATCAGAAAAGGAAATCTCAGATAGTGTCAATGAATAGTTCTGAGCCTATGACGCTGTCACAACTGTGTGTTCGGATCAACACCTTACATCATATTCGGACTGAAACAGAGCAACTGGAAAAAAGAATATCTTATGGTTGGAAGATGGATCTTTTTGCCAAAGATAATGAGAAATCAAAAGTTTCTCTTGCACCCATTGGAAGTGCGCCTGAAGCCAAGTTTGAACTTTCCCAGCCTGGCAGTAAGGAGGGCATTCAGCAGCTTTGTGAATGTACTGCATACAAGGTGGTTTTCCATGATTTGAGTAATGTGCTCTGGGATGGTTTATACCTTGGGGGAACGGCAGGTGCAAGGATAGGACCATTTCTTGAACAACTTGAATCAAACCTAGAAATTATAGCTGATACTGTCCATACGAGAGTTCGTACTCGTGTTCTTACAGCATTAATGAAGGCCTGTTTTGATGGTTTTTTGTTGGTATTGCTGGGTGGAGGTCCTTCTCGTGCTTTTTCAAAGTCTGATTCTGAAATAATAGAGGAAGATTTCGTGGCTCTCAAAAACCTGTTTAAAGCCGATGGGGATGGTCTTCCTGGAGAGTTGGTGGAAAAAGCAGCAATGCCTGTGACAGATATCTTCCCCTTGTTTTCTACTAACACAGAAGGCTTGATTGAGAACTTCAGATTTGCAGTTTGTCAAGCCAATGGCCTATCGTCGACCAAGTCAAAGTTACCTTTACCTCCAACAACAGGTGTGTGGAGCCCAACGGAACCAAATACTCTTTTACGAGTATTATGTTATCGGAATGATGAGGCAGCTACAAAATTCTTGAAAAAAACTTACGGTCTGCCAAAGAGGCTATGA___CGTGTAGCCAATGGTGATATCGGTTCTGGAGTCTGCAATGTAGTATGAATGTGACCCATATTTGGTATTATGATGTGGTATCTGTGTTAGGGTATGTATTGTAGATCTTTTAACCACAGCTCGTGTACAGGAATTCATGATTTTGTGTTAAAGGCAAGCGTAGATGATGTTACAAAACATTGCCATGTAAGTTCTCAACCTGTGACAGAAATGAAATGGCTCCAATGTAAACCTACTTTTATTTTTGTATCAGTAAGCAAGTAGTCATTCTCATGAG

Fln Alignment:

sp_v1.1_unigene1538___DSRRRSFKKQQNPPPALTVLANDIGDLARNEKEKFSPILKRWHPFAAGVAVATLHACYGRELKQFLSGVIALTPESVQVLEAADKLEKDLVQIAVEDSVDCEDGGKGVIREMPPYEVDSILADLSRTWIKERLERLREWVDRSLQQEDWTPVANKEKYSPSAVEVLRIVEETLDAFFELPLSQHSDLLPDLVAGLDRALQRYISQTKSGCGSKNSYVPLLPALTRC
A9NX86______________DSRRRSFKKQQNPPPALTILAKDIGDLARNEKEKFSPILKRWHPFAAGVAVATLHACYGRELKQFLSGVTALTPESVQVLEAADKLEKDLVQIAVEDSVDCEDGGKGVIREMPPYEVDSILAELSRTWIKERLDRLREWVDRNLQQEGWSPVANKEKYAPSAVEVLRIVEETLDAFFELPLSQHQDLLPDLVAGLDRALQRYISQTKSGCGSKNSYVPLLPALTRC

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
406		83		16	0.994512
425	85		14		0.993533
427	85		14		0.993533
445		16		83	0.994512
562		12		87	0.992554
984		20	80		0.995493
1226		25		75	0.996473
1229			75	25	0.996473
1230		25		75	0.996473
1232		25		75	0.996473
1236	25			75	0.996473
1297		25		75	0.996473
1363	90		10		0.90298
1366	90	10			0.90298
1367	90			10	0.90298
1375		11	88		0.923564
1378	88			11	0.923564
1379		11	88		0.923564
1595		33		66	0.997452
1637		20		80	0.995493
1648		80		20	0.995493
1774	58			41	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain