SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1520

Length: 1995 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1520
CTGTGCACAGAAAGAGCTGGCCTTTTCAAAGGTAGGCCGCCAGGGCTGGGCCGACCTTAAAAGAGCAGCAGAAGCAGGGGAGTCGTTGATTTTGTAAAGCCTTTAAACTTCCTTTGACTGTGGAGTTCTTTACATGGCTACATTTTACGATTGGACGTTCCGGCAGGGGAGGGTTATGGATATGAATAATATCAATGTGCAGGAGAGTGAAAAGGATCATGAACTTTATGTGAGGGCCAGGGATGCTGCCCAGGAGGCCCAACGGCAAGCGGATGAGCAGCTTAGAGTGGCGATGGAAGCTTCTAATTTTAGTAAGCTCGGGTACGCCGGGACTCCAGAGAGCGGCTCGATGCTATTGTGTTCTTTTCCCTTGAAATTTAATGCTCCGGGGCTCGAAGAGGCATATTGGAAGAAATGCTGTGCAAATTCGAGTAAGGACTACGTCCCGGTTGCCTGCTTGATCGTTTTCTGCATGCTGCTTCCCACTACGAGCTTGTCTCGGCATTGGCTTAGTGAGATGGTTTATCAGTCACTGAATTTGCAAACTTCTGGAAACCTTTTATGGCACATGTTTGCAGTTGTACTTTGCTCTGCGGTTTTGGTCGTTCAACTAGGCTTTTCGAAATGGTATCAGAGCAATCGGGGAAATGTCCTTCTGGGTTTTGCATCTGTTCTTTGGATTTGGGGCAGTCTGAAACTATTCCTTGTAAACAATCTTGAGCTCAGTTTTAGTTTTCCAGTGGTCTTGATCCAGTGCATTTTCATGAGTATCCTGTATCGTGTTCCATTCTGCATACACATATTCTCAAGAGCGCTTGGTATGGGAATGCAAATTTTTGCCATCTTGGCAAAGGGTAGCAATAGTGAAGCTCCGTTTCTTCTTCTGTTACTTTTCGTTGGTCACACAGTTGGGATGCTTATTGCTTTTGTTTTAGACCGAGAATGTGGATATAGCTTCTTCAACTCACTGTCCCAACTGCTTCTGAATGACGTAACTCAAAGTGGTCCATGTGAGCAGTTATTTAGGCTGCCTTTACTTAAACAAGTGCCAAATCTCAGAAACATCTTATCAGGTATCCTGAATTTGAAAGTCACTAAGAAAAAGGAACTTGATGAACCTATCTATCAGAAGGCTGTTCTAACTAATGCTCCCCGCAGAGCTCTTGGTGGCTTCGCTGGTGGATTTTGTGGTGTTTCTGGCCTGAAATCCAATCGGCCTCCTGTTATAACAAACACCACCATATCTGCCAACAATTCTTCCAGCAAAATTGGATTCTCAGATACTTCATTTGCTGACTATTGGCCATATAGCTTAGGTGTTTTCATATCCCCCAGTGCAGACAACAACGTGGATAATATACTAAGTACAAGTGTTGGATCCTGTTCATGTGTGGATTCTGATTCGAATCTGCACAATCAAATCCATTCTAGGGCCATTTGAGCTTTCAACGTTGTCTGTTAGAGTAGATTATTTTCTATTTAGATCTTCAACTGCAAGTGTTCTCTTGTGGGTTTCTTTTATTCTATGAAAAGATGAGTCGTGTTAATGTTGTGCTTGTAAATATTCTGTACTGTGGCAGTTAGATGCAATCTGTAAAAAGCTTATGCTCGAATGCTTATGGCTTTCATTACTCTATTCGTTTACAGTTTTATGAGTGGTCATTCTAAATGGAGACTTCTCTGAGCAGAACGATTTCATATGTTACTTATATTTAACGTGTATCTCAGCCATCTGGAATATATTAGTAGAGCCTAATTTCAGTGTGGTGACGTTTGACAAAATTTTACCCACATGTATTTGAAATAGGGTGTCTACCCTAAATTTGTAAAAAGGCATTGCGTTTTGCCGACCAAATGCTGTTTTGCCTGGCTGGCGATTTATATGGAGCGTTTTGTCAGATTAAAAAATGGCACGATCATGGAAAAATAACACTACCCCAGTCAGCGTAATTAATGTAATTTTGTTGTACGGGTAGTGATTACTATGAATCTGAA

Ace file of the UniGene sp_v1.1_unigene1520

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	unknown [Picea sitchensis]	-	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPP8

Fln msg: your sequence is longer than subject: 436 - 382

Fln protein: MATFYDWTFRQGRVMDMNNINVQESEKDHELYVRARDAAQEAQRQADEQLRVAMEASNFSKLGYAGTPESGSMLLCSFPLKFNAPGLEEAYWKKCCANSSKDYVPVACLIVFCMLLPTTSLSRHWLSEMVYQSLNLQTSGNLLWHMFAVVLCSAVLVVQLGFSKWYQSNRGNVLLGFASVLWIWGSLKLFLVNNLELSFSFPVVLIQCIFMSILYRVPFCIHIFSRALGMGMQIFAILAKGSNSEAPFLLLLLFVGHTVGMLIAFVLDRECGYSFFNSLSQLLLNDVTQSGPCEQLFRLPLLKQVPNLRNILSGILNLKVTKKKELDEPIYQKAVLTNAPRRALGGFAGGFCGVSGLKSNRPPVITNTTISANNSSSKIGFSDTSFADYWPYSLGVFISPSADNNVDNILSTSVGSCSCVDSDSNLHNQIHSRAI*

Protein Length: 437

Fln nts: CTGTGCACAGAAAGAGCTGGCCTTTTCAAAGGTAGGCCGCCAGGGCTGGGCCGACCTTAAAAGAGCAGCAGAAGCAGGGGAGTCGTTGATTTTGTAAAGCCTTTAAACTTCCTTTGACTGTGGAGTTCTTTAC_-_ATGGCTACATTTTACGATTGGACGTTCCGGCAGGGGAGGGTTATGGATATGAATAATATCAATGTGCAGGAGAGTGAAAAGGATCATGAACTTTATGTGAGGGCCAGGGATGCTGCCCAGGAGGCCCAACGGCAAGCGGATGAGCAGCTTAGAGTGGCGATGGAAGCTTCTAATTTTAGTAAGCTCGGGTACGCCGGGACTCCAGAGAGCGGCTCGATGCTATTGTGTTCTTTTCCCTTGAAATTTAATGCTCCGGGGCTCGAAGAGGCATATTGGAAGAAATGCTGTGCAAATTCGAGTAAGGACTACGTCCCGGTTGCCTGCTTGATCGTTTTCTGCATGCTGCTTCCCACTACGAGCTTGTCTCGGCATTGGCTTAGTGAGATGGTTTATCAGTCACTGAATTTGCAAACTTCTGGAAACCTTTTATGGCACATGTTTGCAGTTGTACTTTGCTCTGCGGTTTTGGTCGTTCAACTAGGCTTTTCGAAATGGTATCAGAGCAATCGGGGAAATGTCCTTCTGGGTTTTGCATCTGTTCTTTGGATTTGGGGCAGTCTGAAACTATTCCTTGTAAACAATCTTGAGCTCAGTTTTAGTTTTCCAGTGGTCTTGATCCAGTGCATTTTCATGAGTATCCTGTATCGTGTTCCATTCTGCATACACATATTCTCAAGAGCGCTTGGTATGGGAATGCAAATTTTTGCCATCTTGGCAAAGGGTAGCAATAGTGAAGCTCCGTTTCTTCTTCTGTTACTTTTCGTTGGTCACACAGTTGGGATGCTTATTGCTTTTGTTTTAGACCGAGAATGTGGATATAGCTTCTTCAACTCACTGTCCCAACTGCTTCTGAATGACGTAACTCAAAGTGGTCCATGTGAGCAGTTATTTAGGCTGCCTTTACTTAAACAAGTGCCAAATCTCAGAAACATCTTATCAGGTATCCTGAATTTGAAAGTCACTAAGAAAAAGGAACTTGATGAACCTATCTATCAGAAGGCTGTTCTAACTAATGCTCCCCGCAGAGCTCTTGGTGGCTTCGCTGGTGGATTTTGTGGTGTTTCTGGCCTGAAATCCAATCGGCCTCCTGTTATAACAAACACCACCATATCTGCCAACAATTCTTCCAGCAAAATTGGATTCTCAGATACTTCATTTGCTGACTATTGGCCATATAGCTTAGGTGTTTTCATATCCCCCAGTGCAGACAACAACGTGGATAATATACTAAGTACAAGTGTTGGATCCTGTTCATGTGTGGATTCTGATTCGAATCTGCACAATCAAATCCATTCTAGGGCCATTTGA___GCTTTCAACGTTGTCTGTTAGAGTAGATTATTTTCTATTTAGATCTTCAACTGCAAGTGTTCTCTTGTGGGTTTCTTTTATTCTATGAAAAGATGAGTCGTGTTAATGTTGTGCTTGTAAATATTCTGTACTGTGGCAGTTAGATGCAATCTGTAAAAAGCTTATGCTCGAATGCTTATGGCTTTCATTACTCTATTCGTTTACAGTTTTATGAGTGGTCATTCTAAATGGAGACTTCTCTGAGCAGAACGATTTCATATGTTACTTATATTTAACGTGTATCTCAGCCATCTGGAATATATTAGTAGAGCCTAATTTCAGTGTGGTGACGTTTGACAAAATTTTACCCACATGTATTTGAAATAGGGTGTCTACCCTAAATTTGTAAAAAGGCATTGCGTTTTGCCGACCAAATGCTGTTTTGCCTGGCTGGCGATTTATATGGAGCGTTTTGTCAGATTAAAAAATGGCACGATCATGGAAAAATAACACTACCCCAGTCAGCGTAATTAATGTAATTTTGTTGTACGGGTAGTGATTACTATGAATCTGAA

Fln Alignment:

sp_v1.1_unigene1520___MEASNFSKLGYAGTPESGSMLLCSFPLKFNAPGLEEAYWKKCCANSSKDYVPVACLIVFCMLLPTTSLSRHWLSEMVYQSLNLQTSGNLLWHMFAVVLCSAVLVVQLGFSKWYQSNRGNVLLGFASVLWIWGSLKLFLVNNLELSFSFPVVLIQCIFMSILYRVPFCIHIFSRALGMGMQIFAILAKGSNSEAPFLLLLLFVGHTVGMLIAFVLDRECGYXXXXXXXXXXXXDVTQSGPCEQLFRLPLLKQVPNLRNILSGILNLKVTKKKELDEPIYQKAVLTNAPRRXXXXXXXXXXXXXXXKSNRPPVXXXXXXXXXXXXXXXGFSDTSFADYWPYSLGVFISPSADNNVDNILXXXXXXXXXXXXXXNLHNQIHSRAI
B8LPP8______________MEAFNFSKLGYAGTPESGSVLLCSFPLKFNAPGLEEAYWKKCCANSSKDYVPVACLIVFCMLLPTTSLSRHWLSEMVCQSLNLQTSGNLLWHMFAVVLCSAVLVVQLGFSKWYQSNRGNVLLGFASVLWIWGSLKLFLVNNLELSFSFPVVLIQCIFMSILYRVPFCIHIFSRALGLGMQIFAILAKGNNSEAPILLLLLFVGHTVGMLIAFVLDRECGYSFFNSLSQLLLEDVTQSGPREQFFRLPLLKQVPNLRNILSGILNLKVTKKKELDEPICQKAIRTNAPRRALGGFAGGFCGVSGLKSNRPPVITNTTISANNLSGKIGFSDTSFTDSWPYSLGVFISPSADNNVDSILSTSVGSCSCMDSDSNLHNQIHSRAI

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
435	90	10			0.90298
505		25		75	1.0
743	22		77		0.999999
744		22		77	0.999999
749	77	22			0.999999
751		77		22	0.999999
754		22	77		0.999999
759	22			11	0.999999
764		88		11	0.923564
777		10		90	0.90298
778	90		10		0.90298
785	10			90	0.90298
788	90			10	0.90298
790			10	90	0.90298
795	90			10	0.90298
796		10		90	0.90298
799	90			10	0.90298
819	11		88		0.923564
915	88		11		0.923564
1093			10	90	0.90298
1703		11	61		1.0
1841		66	33		0.997452
1878			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain