SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1512

Length: 1812 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1512

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BRO1 domain containing protein	-	-	8.0e-40	21%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T7E0

Fln msg:

Fln protein: MGCILSTSQDIEAMEKKPGTVNEVVVFVPGLRVPKGTDFGKLLHASLSASMVEQLSALRTRIVVMAAEEGPTIPKIKRKTPTQHGGSTLADLQLALEDYLPVLLGLAKFGKQLNDMVEFSWINQQDDEKETVLSNAWYEVLSVLHMMAMISLLQANSLLIPRVPADSHQPKVSEENKKTVIGLFLKAAGYLDYGVRYILTRIPDEVKMKLPIDLQEGILQAISLQALGQGVELQLGMAIDCPKATLAVKRRLACEKVKYWRQAQYCISNLRLTNGWGLKHLLVIKWKYAEAKAAAYYYHGLILDESTEENVHAKAVSCFHAAEQFLKESKTACINFCLAAPVTRVPPAWGAMKYLSEKILKDASRKELTDGAVQKLLEGVPKLPDFPVALKPDEYEMPPIDPSWTIKIEMGRSPTASTVDQSRDGMFSLLQLQEVENQRTPLSVA*

Protein Length: 447

Fln nts: ATGGGGATTCACCCTCGTCAATGGGGAGTGCTACTGAAGCCGAGACAGCCATCGCATTCTTCACGTCAGTTGATGGTCTGCTCGCCGATATTAGCTTCATACCCACTCTAGCCTGACTTTCCCACTGTACGAGGATAAAGAATCCGACCAGACTTCAACCATTATAGATTTTAAGCGAC_-_ATGGGATGCATATTGTCCACATCACAAGATATTGAAGCAATGGAGAAAAAGCCAGGGACTGTCAACGAGGTCGTAGTTTTTGTCCCTGGTTTACGAGTACCCAAGGGCACTGACTTCGGAAAATTACTTCATGCCTCTTTATCTGCAAGCATGGTCGAGCAGTTGTCGGCACTTCGGACACGGATTGTTGTCATGGCAGCAGAAGAGGGTCCTACAATTCCAAAAATAAAGAGAAAGACACCAACACAACATGGTGGTTCTACTCTTGCTGACCTTCAACTGGCTCTTGAAGATTACTTGCCTGTTTTGCTGGGCTTGGCTAAATTTGGAAAGCAACTGAATGATATGGTGGAGTTTAGTTGGATTAATCAGCAAGATGATGAAAAGGAAACTGTTCTGTCAAACGCTTGGTATGAGGTGTTGTCCGTTTTGCACATGATGGCTATGATATCTTTATTGCAAGCAAACTCATTGCTAATTCCAAGAGTTCCTGCAGATAGTCATCAACCAAAAGTGTCAGAAGAAAACAAGAAGACTGTGATTGGCTTGTTCCTGAAGGCAGCAGGATATTTGGACTATGGAGTTCGATATATCTTAACTCGAATACCAGATGAAGTCAAGATGAAGCTTCCAATAGACCTGCAGGAGGGCATACTACAAGCCATTTCACTACAAGCATTGGGCCAGGGTGTAGAACTGCAGCTTGGTATGGCTATTGACTGTCCCAAAGCCACTTTAGCAGTCAAAAGGAGACTAGCATGTGAGAAAGTAAAGTACTGGCGCCAGGCACAATATTGCATATCTAATCTTCGCTTGACAAATGGCTGGGGGCTAAAACATCTTCTTGTTATCAAGTGGAAATATGCAGAAGCAAAGGCTGCGGCATATTATTATCATGGATTGATCTTGGATGAGAGTACTGAAGAAAATGTTCATGCAAAAGCAGTATCATGTTTTCATGCAGCGGAGCAGTTCTTGAAAGAAAGTAAAACAGCTTGTATCAATTTCTGTCTGGCAGCTCCTGTAACAAGGGTTCCTCCTGCATGGGGAGCAATGAAGTATCTATCTGAGAAAATTCTGAAGGATGCTTCAAGAAAAGAATTGACCGATGGAGCTGTCCAAAAGTTACTGGAGGGTGTGCCCAAATTGCCAGACTTTCCTGTAGCATTAAAACCTGATGAATATGAGATGCCTCCAATTGATCCCTCTTGGACTATAAAGATTGAAATGGGTCGCTCGCCAACTGCATCTACAGTTGATCAATCAAGAGATGGCATGTTCAGCTTGCTGCAGCTCCAAGAGGTTGAAAATCAAAGAACACCTTTGTCAGTTGCTTGA___TAATTTATGATAAAATTATAGAACAGTTCTGCTGGAGGATTAAACTTAGTGTCCATGGTCAACACAAGGAGGAATTGTACCTTTTTTCATAAAGCGTAGTAGCAGGGATATTCGTTTATCGATAAATATCTAATTTATATTATGTCTTGGAAAGTTTGAAGCAGCAAATGGTGAGTTCATGGTTGAATAGTCATCATGACTGAGAGTTGTGTACATATCATAAAATTTGTGCGGATGTATTTCTATGTAACTCATCCTTATATCATTTGCCTACTTTATAAATCAAAATTTGGCC

Fln Alignment:

sp_v1.1_unigene1512___MGCILSTSQDIEAMEKKPGTVNEVVVFVPGLRVPKGTDFGKLLHASLSASMVEQLSALRTRIVVMAAEEGPTIPKIKRKTPTQHGGSTLADLQLALEDYLPVLLGLAKFGKQLNDMVEFSWINQQDDEKETVLSNAWYEVLSVLHMMAMISLLQANSLLIPRVPADSHQPKVSEENKKTVIGLFLKAAGYLDYGVRYILTRIPDEVKMKLPIDLQEGILQAISLQALGQGVELQLGMAIDCPKATLAVKRRLACEKVKYWRQAQYCISNLRLTNGWGLKHLLVIKWXXXXXXXXXXXXHGLILDESTEENVHAKAVSCFHAAEQFLKESKTACINFCLAAPVTRVPPAWGAMKYLSEKILKDASRKELTDGAV---QKLLEGVPKLPDFPVALKPDEYEMPPIDPSWTIKIEMGRSPT
D7T7E0______________MGCFVSTPTDTGGNRRRPGNIGEVSVFIPGFRIPKPLDFSKSLGDHLSKNLLERLTALRTRIVVMAGHEAPTITRTRRKTATQHGGSTLADLLQALEDYLPVLLGLVKDGSQLQHKVQFVWVNQEDDAEETTMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSSDGYQPKVSEESRRASIDIFLKAAGYLDCAVKHVLPQLSSELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLTNGWGEKHKLFVKWKYVEAKATAYYYHGLILDEGNTEKSHGMAVAALQAADEYLKESKRACEAFNMAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSHQRIMETAPQLPDFALALKPDDYQLPPVDPSWNDNINKGQSAT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1224		25		75	0.996473
1227		75	25		0.996473
1243			25	75	0.996473
1268			80	20	0.995493
1415		12		87	0.992554
1594		25		75	0.996473
1638	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain