SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1493

Length: 1506 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1493 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine protein kinase, putative (EC:2.7.10.2)	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	serine threonine protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	86%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	86%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	86%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	86%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	86%
Blast2go	Protein kinase-like domain	IPR011009	-	86%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7U0

Fln msg: your sequence is longer than subject: 206 - 157

Fln protein: MVNGSLKQVLHRKDRTIDHRKRVIIATDAAFGMEYLHNKKVVHFDLKCENLLVNMRDPQRPICKVGDFGLSKIKHQTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVMWELLTGDEPYADMHYGAIIGGIVSNTLRPPVPNWCDPSWRSLMEQCWSADPAARLSFTEIVNELRAMAASLHSKGQGHHAPVQAHAQKQA*

Protein Length: 207

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGAAGAATTGAAAGAGCTAGGCTCTGGAACTTTTGGAACAGTATACCATGGTAAATGGAGGGGGTCTGATGTTGGCTTTCACTGATAAAAAATAGTTGCTTTGCAGGAAGGCCGTCTCAGCAAGATCGTCTGAGAGCTGATTTTTGGAGTGAAGCTTGCTTGCTTTCAAAACTCCATCATCCAAATATTGTGGCCTTCTATGGTGTGGTACCCGATGGACCTGGTGGAACCTTGGGAACTGTAACAGAATAT_-_ATGGTGAATGGCTCTCTCAAACAGGTTTTGCATCGGAAGGATAGGACAATTGATCACCGCAAAAGGGTCATAATTGCAACAGATGCTGCTTTTGGAATGGAATATTTACATAACAAAAAAGTTGTGCACTTCGATCTGAAATGTGAGAATCTGCTAGTTAACATGAGGGATCCTCAACGTCCTATATGCAAGGTTGGAGATTTTGGCTTGTCCAAAATCAAACATCAGACTTTAGTCTCTGGTGGTGTCCGGGGAACTCTTCCATGGATGGCTCCAGAGCTTTTAAATGGTAGCAGTAGCAAGGTTTCTGAAAAGGTTGATGTGTTTTCCTTTGGCATAGTAATGTGGGAGCTTCTCACTGGCGATGAACCTTATGCTGATATGCATTATGGAGCTATTATTGGAGGGATAGTAAGCAATACATTAAGACCACCTGTGCCTAACTGGTGTGATCCTTCATGGCGGTCGCTAATGGAACAGTGTTGGTCAGCTGACCCAGCTGCAAGACTTTCTTTCACTGAAATTGTCAATGAATTACGGGCAATGGCAGCGTCACTTCATTCCAAGGGACAAGGTCATCATGCTCCAGTTCAAGCGCATGCTCAGAAACAAGCTTAA___ACGCGCATATGTATAGCATATGGTATTCTTTTGTTTGCAAGCAATTTTCTGTTTGTGATATTTTTGTGCATATAGTATGGAGGCTTTCCTGAAATCATTGCAACATTATTGTCTCTTGTTGAAATAGGGCATCGTTGCATATATATTATGCTTAGTTGCCCATTTCATACTGCTATATTTCTGTCCAACTGCCCACAAATCTACTTACATTCTCACTGCTTGTTGGAGGAGGGCATCTGTATGTAGTAGTGGTTGCCTATTTCCTAATAGGTATGAAGGAGAGCTCCTATACAGCATATTATGAAAATTGTTTTCTAATGTCATTTGTTTTTCAGTTTTTTCGCATAGGAGTCACATGCAGTTGACTGGAGTTTGACAGAGGAATCAGAAATAGCTCAACCACAACAAACTATAGCTTCTTCGAGTTTCAGATCTTGAGCATGTTGCATTATAAAATTACCAGTTTTGAAAACAGAATGTAAAAAAGGATTTTTATTTCTGAATTAATCTTGTAGATTTACTCTGCCAGATTGGCTCATGCCTGTCACATTTGAACTGTCTCTTTTGGTTGAAGTTGATTCGTTATTGTGATTTGATTGTATATGTGCGTG

Fln Alignment:

sp_v1.1_unigene1493___MEYLHNKKVVHFDLKCENLLVNMRDPQRPICKVGDFGLSKIKHQTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVMWELLTGDEPYADMHYGAIIGGIVSNTLRPPVPNWCDPSWRSLMEQCWSADPAARLSFTEIVNELRAMAASLHSK
D5A7U0______________MEYLHEKGVVHFDLKCENLLVNMRDPHRPVCKIGDMGLSKVKHQTLVSGGVRGTLPWMAPELLSGKSGMVTDKVDVYSFGIVMWELLTGDEPYADMHCGSIIGGIMNNTLRPPVPSWSDPAWKSLMERCWSADPEQRPPFSEISKELRAVAASINVK

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
163	83			16	0.994512
191		33	66		1.0
254		14	85		0.993533
319	22	77			0.999999
365	10			90	0.90298
395		88		11	0.923564
401		11	88		0.923564
403	88		11		0.923564
404		11		88	0.923564
405		11	88		0.923564
406	11			88	0.923564
408	88		11		0.923564
414		11		88	0.923564
415			11	88	0.923564
522		90	10		0.999898
527	90	10			0.999898
532	10			90	0.999898
533	15	85			1.0
534		90	10		0.999898
535	90		10		0.999898
539	5		10	85	0.999793
541		10	5	85	0.999793
542	80		15		1.0
572	21	78			1.0
573		7	14	78	0.999974
578	85	14			0.999981
580		85	14		0.999981
581	85	14			0.999981
582	78	14	7		0.999974
586	76		23		1.0
587	84			15	0.999986
588		23		76	1.0
591		85	14		0.999981
593		14		78	0.999974
594	85		14		0.999981
610		81		18	1.0
843	90		10		0.90298
850	90		10		0.90298
857		10		90	0.90298
869	10	90			0.90298
880		77		22	0.999999
895	33		66		1.0
1167	25		75		0.996473
1269		11		88	0.923564
1347	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain