SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1489

Length: 3159 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1489
CCGGGGCTCGAGGCTCGAGCAAAATCTCCATCTTTCCAGTGAGCCTCGAGCGAGATCCGCTTCTGGATCGGTTTGTCTGTAAATGTTTTAACTGTAAATTATAACCCTGCACTGATCGGTCTGATTTTCTCCGCAACAAGAGCGAGGAAGTAGATATATAGAGTTGTGGTTCTGATTGACCCTGTAGCCTTGTTTCGTATATAGAAGTTTGCACAATGGCTTCCAACGATGGGTTCTTGACGGATGAACAGCGAGAGCTTTTAAGATCCGCATCCCTTAGTAGGGATTCATCGCATTCTCCAATATTTCCCAAATCTCCAAGGTCTGGACCTGAACTTCAAGGAAAACATGTTGCATGCAGTGCGAAGAACCAAGCTTCTGTTGATGGGTTCTTGACGGATGAACAGCGAGAGCTTTTGAGATCCGCATCCCTGGGTAGGGATTCGACACATCCTTTAAAACTACCCAAATCTCCAAGATCTGGACCTGAATTTCAAGGAAAACATGTTGCAATCGGTTCAAAGAACCATGCTGGAGGCGCTGTGGGCAAACATGACAAGCGTTCTCACTCGGGGAAAAATGGCCGTCCCAAAAAGAGTGGATGTGGTGGCAAAGGCACTTGGGGAGGATTACTAGACACAGATGGGGATGTGCATCTTGATCATAATGACCCAAACTATGATAGCGAGGAGGAACCTTACCAACTGGTGGGTAAAACTGTATCCGAGTCTCTGGAGGAATACAAGGGAAAAGTTGGGTCAATAATAAAGGAATATTTCGCTACTGACGATGTGGCTTCAGCAGCTGCTGATCTTTCTGATCTGGGCTGCCCGAGCTATCACCATTATTTTGTTAAAAAACTTATCTCCATGGCAATGGATAGGCATGACCGAGAAAAGGAGATGGCTGCGGTGCTCTTGTCCTCTCTGTATGCTGATGTGATTGAACCTGAGCAGGTTAGCAAAGGTTTTAGCAAATTGCTCGACTCAGCAGATGATTTGGCCCTGGATATCCCTGATGCAGTAGATGTTTTAGCATTATTTGTTGCTCGTGCAGTAGTTGATGACATACTTCCTCCGGCCTTTCTGACGAAAACATCGAAATCTCTACCAGAGGATTCGAAGGGAGTTGAAGTAATTCAGAAGGCTGAGAAAAGCTATTTATCAGCTCCTCTTCATGCAGAAATTATTGAACGTCGATGGGGTGGCAGCACTCACGTCACAGTAGAGGAAGTAAAAAAGAAGATAAGCGACTTACTACATGAGTATGTTGAAAGTGGGGACAAGGCAGAAGCGTTGCCGGTGCATAAGAGATCTGAAAGTTCGTTTCTTTCATCATGAAGTTGTAAAGAGGGCTTTAATTTTAGCTATGGAACAAAGAAGTGCAGAGCCACTTATTTTGGCTCTATTGAAAGAAGCTGCTGAGGAGGGTCTTATAACATCTAGTCAGATGTCAAAGGGGTTTGGCAGGCTTGCTGACACTGTAGATGATCTGTCACTTGACATAATTAATGCAAAGGACATGTTTGAATCTTTAATTCTCAAGGCAACAACAGATGGTTGGCTTATCCCAGCATCTGTCAGGTCTATCCCCAGTCAACTGGATGAATTGACAGAACAGGATAATGCTAAGCTCTTCAAGGAAAGGGCAATAACTATTATTCAAGAGTACTTCCTTTCTGATGATATCTTTGAAGTTGTGAGGAGCTTGGAAGATCTTGCTGCTCCTGATTTCAATGCAATTTTTGTTAAGAAGCTTATCACATTAGCTATGGACAGGAAGAAGAGGGAGAAAGAAATGGCTTCTGCCTTACTGTCTGCTCTCTATACAGAAGTATTTCCAGTTGAAGATATTGTGAATGGTTTTGTTCTGCTACTAGAAGCTGCTGAGGACACTGCATTAGACATACCTGATGCTGCAAATGAGCTAGCTCTTTTCCTGGCTAGAGCTGTTATAGATGATATTTTGGCTCCACTTAATTTGGAAGAAATTAACGGCCAGTTAAAGCCAGGATCTATTGGGAGTGAAATAGTGCGCTTGGCCCGTTCTCTCCTAGCTGCTCGCCTTGCTGGTGAACGTATTCTTAGGTGTTGGGGTGGTGGCACTGGTTGGGCAGTTGAAGATGCAAAAGACAAAATCAACAAGCTGTTAGAGGAATTTGAGACAGGAGGAGGTATTAGAGAAGCATGTCAATGTATTCGGGATCTTAATATGCCATTCTTTCACCATGAGGTTGTGAAGAAAGCTCTGGTTATGGCAATGGAGAAGAAAAATGATAGGCTGTTGAATTTGCTGCAGGAATGTTCAAGTGAAGGTTTGATTACCATAAATCAAATGGTGAAGGGTTTCACAAGGATTGCTGATAGCCTTGATGACCTAGCGTTGGATATTCCCAATGCTAGGGACAAGTTTTCAAGTTACGTTCAGCAGGCAAAAGCAAATGGCTGGCTGGTATCATCTTTCACCTTTGGCACAATATTTGATCCAACGGAGTCAAATGGGGATATGCATTCGTGAGCTGAGGACATATCTCTTCCTTCTGGGGCAGAGATACCACCTTCACAAACATATAAATCAGTTTTTTCTTGCCCTTTACCTCACAAAGTTAAGTTGTATGCCTCTGTATAAAAGTTTGACATGAAGAATGTAGGGTGCAGGGTTAATTCTGTAGCTGTGTTTAAATTTGGTTACTGCTGCATAGTCTGAGGTGCTAGAACAGAATTGGGTGGTTTTGTGAGTGGGAAAAGGTGTACGAGGTGTGGTAATCTATCTGTATAAATGATGCACTCTTCTTGTCCCTCAATTCATTGTTTCTTTTGTATCATGTACATGTGGAAACTCAATCCTGTGTGTGGAGTGGATAAGCATTGTCTTTATTGTTCAGGCTTTGTTACACTGCCTATTTGTTCTTTTCTTCAAAACTTCAAAACATATTGCAATTTGAAGCATGTCTTGCCTTCAAATCTTTGATGAGAAAAGGAGATTGGATTTTTAAATTTGTTATAGAATATGATTCAGGGAAAATATATATCAAAGAGAATGCTGGCAAATGTTGTCGAGTCCATGCCCAGTCAACTGAAAGTCTGAGTGGACCTGCAGAACATGGTAATCTATTTGTATAAATGTTTCCTACTTTTCCTTCAATTCATTGTTTCTTTT

Ace file of the UniGene sp_v1.1_unigene1489

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MA3 domain-containing protein	-	-	56%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	64%
Blast2go	ma3 domain-containing protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9IF31

Fln msg: warning!, putative chimeric sequence! or repetitive structure your sequence is longer than subject: 768 - 713

Fln protein: MASNDGFLTDEQRELLRSASLSRDSSHSPIFPKSPRSGPELQGKHVACSAKNQASVDGFLTDEQRELLRSASLGRDSTHPLKLPKSPRSGPEFQGKHVAIGSKNHAGGAVGKHDKRSHSGKNGRPKKSGCGGKGTWGGLLDTDGDVHLDHNDPNYDSEEEPYQLVGKTVSESLEEYKGKVGSIIKEYFATDDVASAAADLSDLGCPSYHHYFVKKLISMAMDRHDREKEMAAVLLSSLYADVIEPEQVSKGFSKLLDSADDLALDIPDAVDVLALFVARAVVDDILPPAFLTKTSKSLPEDSKGVEVIQKAEKSYLSAPLHAEIIERRWGGSTHVTVEEVKKKISDLLHEYVESxxxxxxxCRCIRDLKVRFFHHEVVKRALILAMEQRSAEPLILALLKEAAEEGLITSSQMSKGFGRLADTVDDLSLDIINAKDMFESLILKATTDGWLIPASVRSIPSQLDELTEQDNAKLFKERAITIIQEYFLSDDIFEVVRSLEDLAAPDFNAIFVKKLITLAMDRKKREKEMASALLSALYTEVFPVEDIVNGFVLLLEAAEDTALDIPDAANELALFLARAVIDDILAPLNLEEINGQLKPGSIGSEIVRLARSLLAARLAGERILRCWGGGTGWAVEDAKDKINKLLEEFETGGGIREACQCIRDLNMPFFHHEVVKKALVMAMEKKNDRLLNLLQECSSEGLITINQMVKGFTRIADSLDDLALDIPNARDKFSSYVQQAKANGWLVSSFTFGTIFDPTESNGDMHS*

Protein Length: 769

Fln nts: CCGGGGCTCGAGGCTCGAGCAAAATCTCCATCTTTCCAGTGAGCCTCGAGCGAGATCCGCTTCTGGATCGGTTTGTCTGTAAATGTTTTAACTGTAAATTATAACCCTGCACTGATCGGTCTGATTTTCTCCGCAACAAGAGCGAGGAAGTAGATATATAGAGTTGTGGTTCTGATTGACCCTGTAGCCTTGTTTCGTATATAGAAGTTTGCACA_-_ATGGCTTCCAACGATGGGTTCTTGACGGATGAACAGCGAGAGCTTTTAAGATCCGCATCCCTTAGTAGGGATTCATCGCATTCTCCAATATTTCCCAAATCTCCAAGGTCTGGACCTGAACTTCAAGGAAAACATGTTGCATGCAGTGCGAAGAACCAAGCTTCTGTTGATGGGTTCTTGACGGATGAACAGCGAGAGCTTTTGAGATCCGCATCCCTGGGTAGGGATTCGACACATCCTTTAAAACTACCCAAATCTCCAAGATCTGGACCTGAATTTCAAGGAAAACATGTTGCAATCGGTTCAAAGAACCATGCTGGAGGCGCTGTGGGCAAACATGACAAGCGTTCTCACTCGGGGAAAAATGGCCGTCCCAAAAAGAGTGGATGTGGTGGCAAAGGCACTTGGGGAGGATTACTAGACACAGATGGGGATGTGCATCTTGATCATAATGACCCAAACTATGATAGCGAGGAGGAACCTTACCAACTGGTGGGTAAAACTGTATCCGAGTCTCTGGAGGAATACAAGGGAAAAGTTGGGTCAATAATAAAGGAATATTTCGCTACTGACGATGTGGCTTCAGCAGCTGCTGATCTTTCTGATCTGGGCTGCCCGAGCTATCACCATTATTTTGTTAAAAAACTTATCTCCATGGCAATGGATAGGCATGACCGAGAAAAGGAGATGGCTGCGGTGCTCTTGTCCTCTCTGTATGCTGATGTGATTGAACCTGAGCAGGTTAGCAAAGGTTTTAGCAAATTGCTCGACTCAGCAGATGATTTGGCCCTGGATATCCCTGATGCAGTAGATGTTTTAGCATTATTTGTTGCTCGTGCAGTAGTTGATGACATACTTCCTCCGGCCTTTCTGACGAAAACATCGAAATCTCTACCAGAGGATTCGAAGGGAGTTGAAGTAATTCAGAAGGCTGAGAAAAGCTATTTATCAGCTCCTCTTCATGCAGAAATTATTGAACGTCGATGGGGTGGCAGCACTCACGTCACAGTAGAGGAAGTAAAAAAGAAGATAAGCGACTTACTACATGAGTATGTTGAAAGTxxxxxxxxxxxxxxxxxxxxxTGCCGGTGCATAAGAGATCTGAAAGTTCGTTTCTTTCATCATGAAGTTGTAAAGAGGGCTTTAATTTTAGCTATGGAACAAAGAAGTGCAGAGCCACTTATTTTGGCTCTATTGAAAGAAGCTGCTGAGGAGGGTCTTATAACATCTAGTCAGATGTCAAAGGGGTTTGGCAGGCTTGCTGACACTGTAGATGATCTGTCACTTGACATAATTAATGCAAAGGACATGTTTGAATCTTTAATTCTCAAGGCAACAACAGATGGTTGGCTTATCCCAGCATCTGTCAGGTCTATCCCCAGTCAACTGGATGAATTGACAGAACAGGATAATGCTAAGCTCTTCAAGGAAAGGGCAATAACTATTATTCAAGAGTACTTCCTTTCTGATGATATCTTTGAAGTTGTGAGGAGCTTGGAAGATCTTGCTGCTCCTGATTTCAATGCAATTTTTGTTAAGAAGCTTATCACATTAGCTATGGACAGGAAGAAGAGGGAGAAAGAAATGGCTTCTGCCTTACTGTCTGCTCTCTATACAGAAGTATTTCCAGTTGAAGATATTGTGAATGGTTTTGTTCTGCTACTAGAAGCTGCTGAGGACACTGCATTAGACATACCTGATGCTGCAAATGAGCTAGCTCTTTTCCTGGCTAGAGCTGTTATAGATGATATTTTGGCTCCACTTAATTTGGAAGAAATTAACGGCCAGTTAAAGCCAGGATCTATTGGGAGTGAAATAGTGCGCTTGGCCCGTTCTCTCCTAGCTGCTCGCCTTGCTGGTGAACGTATTCTTAGGTGTTGGGGTGGTGGCACTGGTTGGGCAGTTGAAGATGCAAAAGACAAAATCAACAAGCTGTTAGAGGAATTTGAGACAGGAGGAGGTATTAGAGAAGCATGTCAATGTATTCGGGATCTTAATATGCCATTCTTTCACCATGAGGTTGTGAAGAAAGCTCTGGTTATGGCAATGGAGAAGAAAAATGATAGGCTGTTGAATTTGCTGCAGGAATGTTCAAGTGAAGGTTTGATTACCATAAATCAAATGGTGAAGGGTTTCACAAGGATTGCTGATAGCCTTGATGACCTAGCGTTGGATATTCCCAATGCTAGGGACAAGTTTTCAAGTTACGTTCAGCAGGCAAAAGCAAATGGCTGGCTGGTATCATCTTTCACCTTTGGCACAATATTTGATCCAACGGAGTCAAATGGGGATATGCATTCGTGA___GCTGAGGACATATCTCTTCCTTCTGGGGCAGAGATACCACCTTCACAAACATATAAATCAGTTTTTTCTTGCCCTTTACCTCACAAAGTTAAGTTGTATGCCTCTGTATAAAAGTTTGACATGAAGAATGTAGGGTGCAGGGTTAATTCTGTAGCTGTGTTTAAATTTGGTTACTGCTGCATAGTCTGAGGTGCTAGAACAGAATTGGGTGGTTTTGTGAGTGGGAAAAGGTGTACGAGGTGTGGTAATCTATCTGTATAAATGATGCACTCTTCTTGTCCCTCAATTCATTGTTTCTTTTGTATCATGTACATGTGGAAACTCAATCCTGTGTGTGGAGTGGATAAGCATTGTCTTTATTGTTCAGGCTTTGTTACACTGCCTATTTGTTCTTTTCTTCAAAACTTCAAAACATATTGCAATTTGAAGCATGTCTTGCCTTCAAATCTTTGATGAGAAAAGGAGATTGGATTTTTAAATTTGTTATAGAATATGATTCAGGGAAAATATATATCAAAGAGAATGCTGGCAAATGTTGTCGAGTCCATGCCCAGTCAACTGAAAGTCTGAGTGGACCTGCAGAACATGGTAATCTATTTGTATAAATGTTTCCTACTTTTCCTTCAATTCATTGTTTCTTTT

Fln Alignment:

sp_v1.1_unigene1489___ASVDGFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCQCIRDLNMPFFHHEVVKKALVMAMEKKNDRLLNLLQECSSEGLITINQMVKGFTRIXXXXXXXXXXIPNARDKFSSYVQQAKANGWLVSSF
B9IF31______________ATSEGFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQVCFNEGLITINQMTKGFTRIKDGMDDLALDIPNAEEKFNFYVEYAQKKGWLLASF

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
302		25		75	0.996473
307			50	50	1.0
311		25		75	0.996473
416	20		80		0.995493
450	80			20	0.995493
456		60		40	1.0
493	87		12		0.992554
775			75	25	0.996473
1147	88		11		0.923564
1148	88		11		0.923564
1154	88		11		0.923564
1181	88		11		0.923564
1228	11		88		0.923564
1325	50		50		1.0
1373	20			80	0.995493
1426		88		11	0.923564
1619	42		42	14	1.0
1625			85	14	0.993533
1645	87			12	0.992554
1648	85		14		0.993533
1710	80		20		0.995493
1712		60		40	1.0
1875	12			87	0.992554
2162	90			10	0.90298
2166		11		88	0.923564
2170	88			11	0.923564
2171		88	11		0.923564
2213			11	88	0.923564
2214		11		88	0.923564
2216	88		11		0.923564
2328	75			25	0.996473
2389	20			80	0.995493
2391		16	83		0.994512
2393	66		16	16	0.988813
2394		16		66	0.988813
2395	83		16		0.994512
2397			16	83	0.994512
2398	16	83			0.994512
2401	83			16	0.994512
2402	83			16	0.994512
2403			16	83	0.994512
2409			83	16	0.994512
2410		16	83		0.994512
2413	83			16	0.994512
2414	83	16			0.994512
2415	16		83		0.994512
2500		14		85	0.993533
2679		10		90	0.90298
2743	20		80		0.995493
2763	22		77		0.999999
2766			11	77	0.968132
2784	90	10			0.90298
2785	90		10		0.90298
2787		10	90		0.90298
2788	90		10		0.90298
2798		90	10		0.90298
2799			10	90	0.90298
2804	10	90			0.90298
2976	72			27	1.0
3010		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain