SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1470

Length: 1102 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1470

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptidyl-tRNA hydrolase, putative (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	peptidyl-trna hydrolase family protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aminoacyl-tRNA hydrolase.	EC:3.1.1.29	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidyl-tRNA hydrolase	IPR001328	-	0.0	81%
Blast2go	Peptidyl-tRNA hydrolase, conserved site	IPR018171	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB21

Fln msg: Separated hits, possible frame ERROR between 823 and 841, your sequence is longer than subject: 301 - 256

Fln protein: MLGAQGLSHLRLSNVSCAYALRMPLRPSFSEFSGSMLTMHKQSSHTLQMTADVSVDSKPKPWLLVGLGNPGKLYDGTRHNVGFEMIDTIAQGEGIIVSRIQHRALFGKGHINGNPVMLAKPQTFMNVSGESVGPLVAYYKIPLNQVLLIFDDMDLPFATLRLLPKGGHGGHNGMKSVINHFKGSREFPRLRIGIGRPPGKMDPASYVLRPFTKSEREEMDFTLQEGLDAIRILINQGFDKSATIVNRAQKARIQSxxxxxxxKMDFTLQDGLDTIRI*KNEGFDISAPIVNRAQKCQGSK*

Protein Length: 302

Fln nts: ACGGGAGACCTTGGAAGCCACACATTTAGAGTTTGAGAATCGTGGGAAGCTGGAG_-_ATGCTGGGGGCACAAGGCCTATCTCATTTAAGGCTTTCAAATGTTTCATGTGCATATGCCCTGAGGATGCCTCTTCGACCATCATTCTCTGAATTTTCTGGATCAATGCTTACAATGCACAAGCAATCATCCCATACATTGCAAATGACAGCAGATGTTTCTGTCGATTCAAAACCAAAGCCATGGTTGCTGGTGGGATTAGGAAATCCTGGCAAACTATATGATGGTACCAGGCACAACGTTGGGTTTGAAATGATTGACACCATAGCACAAGGAGAAGGAATCATAGTGTCTAGGATACAGCACAGAGCACTTTTTGGAAAAGGGCATATAAATGGTAACCCTGTCATGTTGGCTAAACCACAAACTTTCATGAATGTGAGTGGAGAATCGGTTGGGCCACTTGTCGCATACTACAAGATTCCTCTCAATCAAGTACTTTTGATATTTGATGATATGGATCTGCCATTTGCAACACTCAGACTTCTGCCAAAAGGTGGACATGGAGGTCATAACGGGATGAAAAGCGTAATTAATCATTTCAAAGGGAGCCGTGAATTTCCACGTTTAAGAATTGGCATAGGCAGGCCACCTGGAAAGATGGACCCTGCAAGTTATGTGCTTCGACCATTCACTAAAAGTGAACGGGAAGAGATGGACTTCACTCTTCAAGAAGGATTAGATGCTATTAGGATTCTAATAAATCAAGGCTTCGACAAAAGTGCTACTATTGTCAACAGAGCACAAAAAGCTAGGATTCAAAGTAGxxxxxxxxxxxxxxxxxxAAAGATGGACTTCACTCTTCAGGACGGATTAGACACCATTAGGATTTAAAAAAATGAAGGCTTTGACATAAGTGCTCCTATTGTCAACAGAGCACAAAAATGCCAGGGTTCAAAATAG___ATACATATTTCAATGTCAAATGTTTTGGTATTTACACTGCCCATAATTATTTTGTTACTAGATGTGTTTTACATAGTTAAAGCTGCTGTGCTTTCAAAATTTCTTCTGCTACATCAAGAAGATGAATAGTATTGTGCCTTGAACC

Fln Alignment:

sp_v1.1_unigene1470___MLGAQGLSHLRLSNVSCAYALRMPLRPSFSEFSGSMLTMHKQSSHTLQMTADVSVDSKPKPWLLVGLGNPGKLYDGTRHNVGFEMIDTIAQGEGIIVSRIQHRALFGKGHINGNPVMLAKPQTFMNVSGESVGPLVAYYKIPLNQVLLIFDDMDLPFATLRLLPKGGHGGHNGMKSVINHFKGSREFPRLRIGIGRPPGKMDPASYVLRPFTKSEREEMDFTLQEGLDAIRILINQGFDKSATIVNRAQKARIQSSxxxxxxKMDFTLQDGLDTIRI*KNEGFDISAPIVNRAQKCQ
D5AB21______________MLGAQGISHLRLSNVSCAYALRMPRRPSVSEFSGSMLTMHKQSSHTLQMTADVPVDSKPKPWLLVGLGNPGKLYNGTRHNVGFEMIDTIAQAEGISVSRIQCRALFGKGHINGSPVMLAKPQTFMNASGESVGPLVAYYKIPLNQVLLIFDDMDLPFAKLRLLPKGGHGGHNGMKSVIDHFKGNREFPRLRIGIGRPPGKMDPISYVLRPFTKGEQEELDLTLQDGLDAIRILINQGFDKSATIVNRAQKARIQNSxxxxxxELDLTLQDGLDAIRILINQGFDKSATIVNRAQKAR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
743		10		90	0.90298
1021			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain