SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1453

Length: 1745 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1453

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RX94_RICCO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain	IPR001356	-	73%
Blast2go	Homeodomain-like	IPR009057	-	73%
Blast2go	Homeodomain-related	IPR012287	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNE3

Fln msg:

Fln protein: MGRPPLSGAPVFRFSSKEVQEMEKVLEDSKGAIPHRDVIRSLAEKFSASPERDGKIIVQTKQVWTWFQNKRYSQKSKSVKVQGNATPLPRDDSVAKRAVTSSAAVPSGRKAPDAAEMEFEAKSSRDGAWYDVSSFVTHRMFESGDPEVRVRFAGFGAEEDEWVNVKKCVRQRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDNDQSEEIVPLRKICRRPETDYRLKLVHASKELSSMELDQGSQQVKDIPAASNPIGHFGEGTREEFHLSAEVPRSTSQVLEANVQFSTAPTTSSVLHAKEASSAESQTNLPATEIDSIQNMGAPSLTRIDDASNIKVDAAAKSKIQD*

Protein Length: 377

Fln nts: AGAGCAGGTGGTATCAACGCAGAGTACATGGGGACCCTGTCATTGAAGGAAAACCCTTTCCATTACTCTGATATGGTTTTGGATCCATAGTTATCCTTGTATTCTAGTTTGATTTTCAAGGCGTTCTACACTCATTTGACACTCTATCTGTTACTCCAAGGCTAAGCAAGTCCCAGATTCATATTGGGGAATTATTTTCCACCTTTCCCTCCATTTTTTGGCTGCCCGGAGTGATCTTGAAGCTATAAGCGGGTTGCAGAGAAGTAAGGAGACGAGTTACCAGTAGGTTTTATCGCACG_-_ATGGGGCGGCCGCCGCTAAGTGGGGCTCCTGTTTTCCGCTTCTCTTCCAAGGAGGTTCAAGAAATGGAAAAGGTCTTAGAAGATTCTAAAGGTGCAATTCCTCATCGTGATGTGATCCGTTCACTTGCTGAGAAATTCAGTGCATCACCAGAAAGGGATGGGAAAATTATTGTACAAACAAAGCAGGTATGGACTTGGTTTCAAAACAAGAGGTATTCACAAAAATCAAAATCTGTTAAGGTGCAAGGAAATGCTACACCGTTACCTCGCGATGACTCAGTAGCAAAGAGAGCGGTGACTAGTTCTGCAGCTGTTCCTTCAGGAAGAAAGGCTCCAGATGCTGCAGAAATGGAGTTTGAGGCAAAATCATCAAGAGATGGGGCATGGTACGATGTTTCTTCATTCGTCACACACAGAATGTTCGAGTCAGGTGATCCAGAAGTCCGTGTAAGATTTGCAGGATTTGGAGCTGAGGAAGATGAATGGGTCAATGTGAAAAAGTGTGTGAGACAGCGTTCTCTTCCCTGTGAATCTTCTGAATGTGTAGCCGTGCTGCCAGGAGACCTCATACTCTGTTTTCAGGAAGGTAAAGAACAAGCACTATACTTTGATGCTCATGTTTTGGATGCCCAAAGAAGGAGACATGATGTGCGTGGTTGTAGGTGTAGGTTCTTGGTTCGGTATGACAATGACCAATCTGAGGAAATAGTACCATTGAGGAAAATCTGTCGGCGACCAGAGACAGATTACCGCTTAAAACTAGTCCATGCTTCCAAAGAATTATCATCAATGGAGCTGGACCAAGGATCTCAGCAAGTAAAAGATATCCCTGCAGCTTCCAATCCCATTGGTCATTTTGGAGAAGGAACTCGGGAAGAGTTTCATCTCTCAGCGGAGGTACCAAGGAGTACTAGCCAGGTTCTAGAAGCAAATGTTCAGTTCTCAACTGCTCCCACGACTTCATCAGTTTTGCATGCTAAAGAAGCTTCATCTGCCGAGTCTCAAACAAATCTTCCAGCCACAGAAATTGATTCTATCCAGAACATGGGTGCTCCTTCATTAACTCGTATAGATGATGCTTCGAATATCAAGGTTGACGCAGCAGCAAAAAGTAAAATCCAAGATTGA___AGGAAATAAGTTAGGGGTACTTATATCCCTGAAAAGCACCTGCGCAAATATGACAGATAATACTATTGTAATAGTAAGTTTTAGAAGCTATCCTTTTGGAGGAATCATTTTTGCAAGTTTTCTTGCTTTATATTTATGGTGTAATTAGTAGCAATTCATATTTTGCTGAGCCTGTGTGCCATATGCATTAGTTCAGCGTTAATATTTGTATGTTAAATTTGACTTATAAGACTTGGATTTTAGGAAATCATTGTAACTATTGTTTGACACGAAACCTCTCTTCTTGATAAATAATATTGATGAGATCGTTATTTGTTC

Fln Alignment:

sp_v1.1_unigene1453___MGRPPLSGAPVFRFSSKEVQEMEKVLEDSKGAIPHRDVIRSLAEKFSASPERDGKIIVQTKQVWTWFQNKRYSQKSKSVKVQGNATPLPRDDSVAKRAVTSSAAVPSGRKAPDAAEMEFEAKSSRDGAWYDVSSFVTHRMFESGDPEVRVRFAGFGAEEDEWVNVKKCVRQRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQXXXXXXXXXXXXFLVRYDNDQSEEIVPLRKICRRPETDYRLKLVHASKELSSMELDQGSQQVKDIPAASNPIGHFGEGTREEFHLSAEVPRSTSQVLEANVQFSTAPTTSSVLHAKEASSAESQTNLPATEIDSIQNMGAPSLTRIDDASNIKVDAAAKSKIQD
B8LNE3______________MGRPPLSGAPVFRFSSKEVQEMEKVLEDTKGAIPNRDMIRSLAEKFSASPERDGKILVQIKQVWTWFQNKRYSQKTKSTKVQGNAAPSPRDDSVAKRAVTSSAAVPSGRKVPDGAEMEFEAKSSRDGAWYDVASFVTHRMFESGDPEVRVRFAGFGAEEDEWVNVRKCVRQRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHILDAQRRRHDVRGCRCRFLVRYDNDQSEEIVPLRKICRRPETDYRLKLVHASKELSSIELDQGSQQVKDAHAA--PMSHFGEGTREEFHLSADISRSISQVLESNVQSLTAPTTSSVLHAKEASSAESQTSLPATEIDSIQNMVAPSITHTDNASNITVDATAKSTVQD

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
371	90		10		0.90298
424	90		10		0.90298
475	80		20		0.995493
647	25		75		0.996473
835		28		57	1.0
955			42	57	1.0
1015	90		10		0.90298
1019	83			16	0.994512
1025	83		16		0.994512
1030		16		83	0.994512
1036	83		16		0.994512
1054		90	10		0.90298
1058	90	10			0.90298
1064	10		90		0.90298
1088	10			90	0.90298
1093			90	10	0.90298
1211	86	8			0.999539
1212		91	8		0.999807
1215	4	8	86		0.999539
1218	91			8	0.999807
1228	90	9			0.999842
1419	14			85	0.993533
1444		50	50		1.0
1688	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain