SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1438

Length: 1855 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1438

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UBC23; UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase; K10581 ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	75%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMC9

Fln msg: your sequence is longer than subject: 383 - 148

Fln protein: MEMSNVECEQLIRDSKSHQLEHIEDGLTTMPIASEVTDSKIRVECSGHINEEDVQSFQNRVQVSTGEYSTGSMPTHMKLNSDQMHSLSFSGKDDQFKHFDSVKGPLDHNFLNETTQNSNDRKWSKKVQQEWSILEKNLPDMIYVRVYEDRMDLLRAVILGASGSPYQDGLFFFDIYLPPDYPQAPPAVYYHSHGLKLNPNLYETGKVCLSLLNTWTGRGNEIWDPKISSILQVLISLQGLVLNARPYFNEAGYDKQIGTAEGEKNSVAYNENSFLLTCKLMLYLLHRPPQHFESFVKDHFRRRSQSILATCDAYMKGAEVGSLSEVSLNSDSVSENNSSVGFRLMLAKVMPKLQAAFNELRDDHQNLETTLKEVEDREHTEA*

Protein Length: 384

Fln nts: GATAATACAAGAGATGCATTTGAGGCTGACACGGAGCTGGAACAGGTTGTAGAAGATATTCCAAACCCAATTACTACTGATGGAAATAACGATGTGGGCACTATAACATCAGATGAAAACTTGAACGATAGTAGCAATGGTGGCATGTCAATACCTCGAGCAGCATTTGGATTTGTTGCTAGGCTTGCCACTGGTCTTCTTGGATTTCGAGGTTCCAAGAGCTCATCAAATACCATGGATGCAAATTCTCAGGAGCAGACTACTCTGCTGAATGGACTTGAAAGAACTCTGACGAG_-_ATGGAGATGAGCAATGTTGAATGTGAACAACTTATAAGAGATTCCAAGAGTCATCAATTGGAACATATTGAAGATGGTTTGACTACTATGCCTATAGCATCAGAGGTGACAGATTCTAAAATCAGGGTAGAATGTAGTGGCCACATAAATGAGGAAGATGTGCAAAGTTTCCAAAACAGAGTGCAAGTTTCCACAGGAGAGTATTCAACAGGCAGTATGCCTACCCATATGAAGCTCAATTCAGATCAAATGCATAGCTTGTCCTTTTCTGGCAAAGATGACCAGTTCAAACACTTTGACAGTGTGAAGGGCCCTCTGGACCATAACTTTTTGAATGAAACAACCCAGAATTCTAATGATAGAAAGTGGTCAAAGAAAGTTCAGCAAGAGTGGAGTATCCTTGAAAAAAATTTACCTGACATGATTTATGTGCGAGTCTATGAGGATCGTATGGATTTGCTCAGGGCTGTGATTCTTGGAGCCAGTGGGTCTCCATATCAAGATGGCCTTTTCTTCTTTGATATTTATCTTCCACCTGATTACCCTCAGGCACCACCGGCAGTCTACTATCATTCTCACGGGCTTAAATTGAATCCCAATTTATATGAAACTGGAAAAGTCTGCTTGAGTCTTCTGAACACATGGACTGGCAGAGGAAATGAAATATGGGACCCCAAAATTTCAAGCATTCTACAGGTCCTCATTTCTCTTCAAGGTCTTGTACTAAATGCCAGACCATACTTCAATGAAGCAGGATATGATAAGCAAATTGGTACCGCTGAAGGAGAGAAGAATTCTGTTGCATACAATGAAAATTCTTTTCTACTTACCTGCAAGCTGATGTTATATCTTCTACATAGACCTCCACAGCATTTTGAAAGCTTCGTAAAAGACCACTTCCGAAGACGTAGTCAGTCCATTCTTGCCACATGTGATGCATATATGAAGGGTGCTGAAGTTGGATCTCTCTCAGAAGTGTCATTGAATTCTGACTCAGTTTCAGAGAACAACAGTTCGGTTGGTTTCAGGCTGATGTTAGCAAAGGTTATGCCAAAGCTTCAAGCGGCATTTAATGAACTTAGAGATGATCATCAAAATCTGGAGACAACACTCAAGGAAGTGGAAGATAGAGAACACACTGAAGCTTAG___TTGGTTAAATCATACATGTAAATACACACGATAATTGGTCTTTCGGTCAGTCAATGCTGACGTGGATTGATTATGCAAATTTAACAAAATTCAAAATCTGAAGTTCTGTTACCTTATGTTCTTGATTTGTAAAGTTGTAAAATAATCACAATTGGCAAACAGGTCCATGTGTTGTGGTAAATATATGTCACACTTCACGCGCTTCTCGAATATCTCAGCTTTTGTACCAAGACTTTTCAATTGCTTGTTCTTATTGACTGGGAAGTATTTAGTTCCCCCACCACTTAGTGATTGAAGGGTGCATAGATTTTAAGCTTTTGAATCTTTTGATTGGTGGGGTTGCCATCTGTACTGGAGTATTCAATACTGAAGATTGAGATTGCTGACATTGCAAAATGGTATATATGATG

Fln Alignment:

sp_v1.1_unigene1438___SKKVQQEWSILEKNLPDMIYVRVYEDRMDLLRAVILGASGSPYQDGLFFFDIYLPPDYPQAPPAVYYHSHGLKLNPNLYETGKVCLSLLNTWTGRGNEIWDPKISSILQVLISLQGLVLNARP
B8LMC9______________SKRILKELKDLQKDPPTSCSAGPVADDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINNNGSICLDIL-------KEQWSPAL-TISKVLLSICSLLTDPNP

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
479	80		20		0.999996
962	85			14	0.993533
963	85		14		0.993533
964			16	83	0.994512
965	83		16		0.994512
983	83		16		0.994512
1073		20		80	0.995493
1088	20		80		0.995493
1178	83		16		0.994512
1320	10		90		0.90298
1392		88		11	0.923564
1624		13	86		0.999973
1646		71		28	1.0
1743	85		14		0.993533
1745	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain