SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1430

Length: 1761 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1430

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[C] COG1413 FOG: HEAT repeat	-	-	7.0e-06	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	armadillo beta-catenin repeat family protein	-	-	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Armadillo	IPR000225	-	73%
Blast2go	Armadillo-like helical	IPR011989	-	73%
Blast2go	Armadillo-type fold	IPR016024	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADE7

Fln msg:

Fln protein: MADEEEQKAEYGSDKDWVNNRRSKESMQDALWSLLYGANGDVDVRIRAAKEIRRLTKTSAKSRAYLAAAGVIVPLVSMLKSTNLEAKEAAVLALLNLAVGNERNKVRIVKAGAIPTLVELLQSENANLRESVVAAILTLSASAINKPIIGVSGAIPLLVEVLTSGSIQGKVDAVMALYNLSTHTDNLLPILAAGAMPPLIRLLKDCKKSSKFSEKMTALLESLLALEEGRTTVVKEEGGILALVEAVEDGSPQSREHAVGALLNLCQANIGEYRQAILKEGVIPGLLELTVHGTSKAQQKARTLLQLLRDSSTRTNSSSDVLESIVQNIASHIDGVEQGSAAAKQMLSEMVHLSMERSMKQLQQRALLSIPSQISRSNCSPEAPSK*

Protein Length: 388

Fln nts: ATGGGATGTTGGTGAGCTTTCACTGTTGGTGATGACAGGTGGGGTCTCTGAGTATCGTTTTAAGGCCAAACTGTCATCTGGATCCGGGTGGTCGCAGGTGTTTTGCAGAAACAGGGCATAGGTGTTTTATATTGTGTTTCAGAGAGTCAAATGTGTGAATAGAGCTCTGACATTAGCATATTCGTTCATGTTTATGTGTAATCTTTGGTAGAG_-_ATGGCAGACGAGGAAGAGCAGAAGGCTGAATATGGATCAGACAAGGATTGGGTTAATAATAGAAGAAGCAAGGAAAGCATGCAGGACGCTCTGTGGTCTCTTTTATATGGAGCTAATGGGGATGTTGATGTGAGGATTAGGGCTGCCAAGGAGATCAGAAGGCTGACCAAAACTTCTGCTAAAAGCAGAGCTTATTTGGCTGCAGCAGGTGTGATTGTTCCCCTTGTATCCATGCTCAAATCGACCAATTTGGAGGCCAAGGAAGCTGCTGTGTTGGCTCTTCTCAACCTTGCAGTTGGAAATGAAAGGAATAAGGTCAGAATTGTTAAAGCAGGTGCAATTCCAACCCTTGTGGAACTCCTGCAGTCAGAAAATGCCAACTTAAGGGAGTCTGTTGTTGCGGCTATATTAACACTTTCGGCATCTGCTATCAATAAGCCAATCATTGGTGTTTCTGGGGCTATCCCTCTCTTAGTAGAGGTGTTAACATCTGGAAGCATTCAAGGGAAAGTTGATGCAGTGATGGCTCTCTACAACCTGTCAACACATACAGATAATTTGCTACCTATTCTTGCAGCTGGTGCCATGCCACCTTTAATCAGGTTGCTAAAAGATTGCAAGAAAAGTTCTAAATTTTCAGAGAAGATGACCGCCTTGCTAGAGTCATTGTTGGCTTTAGAAGAAGGCAGGACCACTGTAGTAAAGGAGGAAGGGGGAATTCTTGCGCTGGTGGAAGCAGTGGAAGATGGTTCTCCTCAGAGCCGTGAGCATGCTGTTGGTGCTCTTCTGAATTTATGTCAAGCAAATATAGGTGAATATAGGCAAGCCATCCTTAAAGAAGGAGTCATTCCAGGACTCCTTGAGCTCACAGTTCATGGAACATCTAAAGCCCAACAGAAGGCTCGGACTCTTTTGCAGTTACTGAGAGACTCATCAACACGAACAAATTCATCATCTGATGTACTTGAAAGCATAGTGCAAAATATTGCTTCCCACATTGATGGTGTGGAGCAAGGATCTGCAGCTGCCAAGCAGATGCTATCAGAGATGGTTCACCTGAGCATGGAAAGGAGCATGAAGCAATTGCAACAGAGAGCATTACTGTCTATACCCTCTCAGATTTCCCGATCAAATTGCTCTCCTGAAGCACCATCGAAGTAA___TATTTTAAGATGTACAGCTATACTTTAACATCATCAAGGCTTCTCTAGCCTAAGCAGAGGCTGTTGGACATTTATACATAATCTACCACTCCAAGCCATTTAATGGTTTGGGTAAGCGCTTATGATCTTGCACTTCTTCAGTTGCCTGACTTATTGGGACGTTGATAAGAAACTTCATAGGTTTAATATTTTATGAATCAAAAAATCATAAATAGTGTCTTTCACAAATGGTTGTGGAAGGTTGCTCTGTGTAGAGAAACTATTTCCCTTGGAAGAGATCTGCTCACCCTACTTGAATTATTGGCATTGTACATTTTATCCAGTTGTTCGCTATCACAATTTGTTACTTTGTATGAAACGTGACTTTTTGTTTTTGAGCCTTCTACT

Fln Alignment:

sp_v1.1_unigene1430___MADEEEQKAEYGSDKDWVNNRRSKESMQDALWSLLYGANGDVDVRIRAAKEIRRLTKTSAKSRAYLAAAGVIVPLVSMLKSTXXXXXXXXXXXXXXXXXGNERNKVRIVKAGAIPTLVELLQSENANLRESVVAAILTLSASAINKPIIGVSGAIPLLVEVLTSGSIQGKVDAVMALYNLSTHTDNLLPILAAGAMPPLIRLLKDCKKSSKFSEKMTXXXXXXXXXXXGRTTVVKEEGGILALVEAVEDGSPQSREHAVGALLNLCQANIGEYRQAILKEGVIPGLLELTVHGTSKAQQKARTLLQXXXXXXXXXXXXXXVLESIVQNIASHIDGVEQGSAAAKQMLSEMVHLSMERSMKQLQQRALLSIPSQISRSNCSPEAPSK
D5ADE7______________MADEEEQKAEYGSEKDWVNNRRSKESMQDVLWSLLYGAHGDVDVRIRAAKEIRRLTKTSAKSRAYLAAAGVIVPLVSMLKSANLEAKEAAVLALLNLAVGNERNKVRIVKAGAIPTLVELLQSENANLRESVVAAILTLSASAINKPIIGVSGVIPLLVEMLTSGSIQGKVDAVMALYNLSTYTDNLLPILAAGAVPPLIWLLKDCKKTSKFSEKMTALLESLLALEEGRTAVVKEEGGILALVEAVEDGSPQSREHAVGALLNLCQANIGEHRQAILKEGVIPGLLELTVQGTSKAQQRARILLQLLRDSSTQRNSSSNVLESIVHDIASHIDGVEQGSATAKQMLSEMVHLSMEKSMKQLQQRALLSIPPQISRSNRLPEAPSK

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
726		16		83	0.994512
744	14	85			0.993533
746	85		14		0.993533
747		85	14		0.993533
864		66		33	1.0
939	11		88		0.923564
1353		20		80	0.995493
1371	66		33		0.997452
1415	75			25	0.996473
1453		25		75	0.996473
1493		25		75	0.996473
1592			80	20	0.995493
1693	75		25		0.996473
1730	25			75	0.996473
1731			75	25	0.996473
1732	33			66	0.997452
1733	66		33		0.997452
1735		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain