SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1420

Length: 1715 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1420

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein era, putative n=1 Tax=Ricinus communis RepID=B9S6C9_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	gtp-binding protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Blast2go	GTP-binding domain, HSR1-related	IPR002917	-	83%
Blast2go	K Homology domain, type 2	IPR004044	-	83%
Blast2go	Small GTP-binding protein domain	IPR005225	-	83%
Blast2go	GTP-binding protein Era	IPR005662	-	83%
Blast2go	GTP binding domain	IPR006073	-	83%
Blast2go	K homology domain-like, alpha/beta	IPR015946	-	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC54

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MEFTGHLHVHGLRSSSNDYFCISPSLRWASLHSATKCKGQISMTRPRNFMQSDTDFAILLTNKSNIEIRNKSRLTTHAQSYEDRMSVSLNDKPERTLNIKEEDADDGEDSGYGDLSVGPDHRSGYVAVVGKPNVGKSTLLNQMIGQKVSIVTDKPQTTRHRILGLCSAPDYQMVLYDTPGVIKKEMHKLDAMMMKNVHSATGNADCVLIVVDVCKMPEKVNDLFEEDGKDLKEKPPTLLILNKKDLIKPGEIAKRMEWYEKFGGAGHILPISAKYGHGVEDVKNWIVSKLPSGPAYYPKDIISEHPERFFVAEIVREKIFMQYRQEIPYSCQVNVANYIVRPTSKDFIEIEIVVEKEAQKIILIGKEGKALKLLATAARLDIEDFLQKQVYLEIKVKVKPNWRQDVNLLKRFGYSGAIRPY*

Protein Length: 423

Fln nts: ATTGGGGACTGTATTCCATCCGAAACACTGACAAGAGGAATAGATGACCTGGGTGAAATAATGGTTATCTTTGAACTTGAACGGATAATTACAGAAGGAACATTGGATTAGCCAGCAGAGTGAAACGCCTCTTGATTC_-_ATGGAGTTCACTGGGCATCTTCATGTCCATGGTCTTCGAAGTTCCTCGAATGATTATTTCTGCATTTCACCTTCATTGCGGTGGGCGTCGTTGCATTCTGCAACAAAATGTAAAGGGCAAATTTCGATGACCAGACCGCGCAATTTTATGCAGAGTGATACGGATTTCGCCATCCTTCTTACAAATAAGTCGAACATTGAGATACGCAATAAAAGTAGGCTTACAACTCATGCACAATCTTATGAGGATAGAATGTCGGTGTCCTTAAATGACAAGCCCGAAAGGACGTTGAATATTAAGGAGGAAGATGCAGATGATGGGGAAGATTCTGGCTACGGCGATCTCAGTGTTGGCCCCGACCACCGGAGCGGATATGTAGCTGTAGTCGGCAAGCCAAATGTTGGAAAGAGCACACTTCTGAATCAGATGATTGGACAAAAGGTTTCCATAGTTACAGACAAACCCCAGACTACACGGCATCGAATCCTTGGCTTGTGTTCTGCCCCTGATTATCAGATGGTTCTATATGACACACCTGGTGTGATTAAAAAAGAAATGCACAAATTAGATGCCATGATGATGAAGAATGTGCATTCTGCAACTGGCAATGCAGATTGTGTTTTGATAGTAGTTGATGTTTGCAAGATGCCAGAAAAGGTAAATGACCTGTTTGAAGAAGATGGAAAAGATCTCAAGGAGAAACCACCGACATTGCTGATATTAAACAAAAAGGACCTTATCAAGCCTGGGGAAATTGCAAAGAGAATGGAGTGGTATGAAAAATTTGGTGGAGCAGGTCATATTCTACCCATAAGTGCCAAATATGGACATGGAGTAGAGGATGTAAAGAATTGGATTGTTTCCAAGCTACCATCTGGGCCTGCATATTATCCTAAGGACATCATCAGTGAGCATCCAGAGAGATTTTTTGTGGCTGAAATAGTTCGGGAAAAAATTTTCATGCAATATCGTCAAGAAATTCCATATTCATGCCAGGTCAACGTGGCCAACTATATTGTTCGCCCTACATCCAAAGATTTTATTGAGATTGAAATTGTTGTTGAGAAAGAAGCTCAAAAGATCATTCTAATTGGAAAAGAAGGGAAGGCACTTAAGCTCTTAGCTACAGCTGCTCGCCTTGACATAGAGGACTTCTTACAGAAGCAAGTATATTTGGAGATCAAAGTCAAAGTGAAACCAAATTGGCGCCAGGATGTAAATTTGCTGAAGCGGTTCGGATATAGTGGAGCAATCAGGCCTTACTAATCAGTTCCACAACAATTATGTAATTTGTATAATATAATTTCTGTAAAAAAAATTGAACTTCATCTCAAAGATGGTTGACGTATACTTGAAAGAGGTTTATGACCAGTTAGTTTTTCTATGTACTTTTAAGTTTTTATGGTAATTTTCAAGCCAATTCATCTCAAATACCACCGAACTAGAATATATATATGATACGTCAACATGATTGAAGATGTGCTAAAGGGTTGTGATTATTTCAATTGTTACAACAAAATGTAGCAGTATCAAGTGCGATTGTAGTGTTGAAAGTTACATATATTCAATAAATATAT

Fln Alignment:

sp_v1.1_unigene1420___FMEFTGHLHVHGLRSSSNDYFCISPSLRWASLHSATKCKGQISMTRPRNFMQSDTDFAILLTNKSNIEIRNKSRLTTHAQSYEDRMSVSLNDKPERTLNIKEEDADDGEDSGYGDLSVGPDHRSGYVAVVGKPNVGKSTLLNQMIGQKVSIVTDKPQTTRHRILGLCSAPDYQMVLYDTPGVIKKEMHKLDAMMMKNVHSATGNADCVLIVVDVCKMPEKVNDLFEEDGKDLKEKPPTLLILNKKDLIKPGEIAKRMEWYEKFGGAGHILPISAKYGHGVEDVKNWIVSKLPSGPAYYPKDIISEHPERFFVAEIVREKIFMQYRQEIPYSCQVNVANYIVRPTSKDFIEIEIVVEKEAQXXXXXXXXXXXXXXXXXXXRLDIEDFLQKQVYLEIKVKVKPNWRQDVNLLKRFGYSGAIRPY
D5AC54______________FMELTAHLHVHAPRTFSKDYFCILPLLQRASLHPLTKCKRKISVTRRRNFMQSDKDFSVPLTNKSKTEIRDKTRVSPHAQSSEDRVSVSLNDKPERMLNVKEEGADNGGDYDYGDLSVGPDHRSGYVAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVLYDTPGVIQKEMHKLDAMMMKNVHSATGNADCVLTVVDVCKVPEKVNDLFEEDGVDLKKKPPTLLVLNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVSKLPYGPAYYSKDIISEHPERFFVAEIVREKIFMQYRQEVPYACQVNVASYIARPTSKHFIEIEIVVEKGAQKIILIGKEGKALKLLATAARLDIEDFLQKQVYLEIKVKVKPNWRQDVDLLKRFGYSGAIRPY

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
322		11		88	0.923564
518			10	90	0.90298
522			90	10	0.90298
525	10		90		0.90298
532	10		90		0.90298
535	90	10			0.90298
536	10		90		0.90298
539	90			10	0.90298
540	90		10		0.90298
541	90		10		0.90298
549	81			18	0.999994
552	90		10		0.90298
567		90	10		0.90298
568	90		10		0.90298
713		10		90	0.90298
715		90		10	0.90298
717	90		10		0.90298
721		10		90	0.90298
722		10	90		0.90298
723	90			10	0.90298
726	90	10			0.90298
727	90			10	0.90298
729	90			10	0.90298
730	90	10			0.90298
731	10			90	0.90298
732		10	90		0.90298
734		10	90		0.90298
735	10	90			0.90298
1136		90	10		0.999898
1137		80	20		1.0
1138	90			10	0.999898
1139		10	90		0.999898
1142		90	10		0.999898
1144	90	10			0.999898
1146			90	10	0.999898
1151		90		10	0.999898
1152	90	10			0.999898
1418	77	16			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain