SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1415

Length: 1252 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1415 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulin-like protein (Fragment) n=1 Tax=Plantago major RepID=Q5ZFS7_PLAMJ	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	nodulin-like protein	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM15

Fln msg: Overlapping hits, possible frame ERROR between 306 and 300, your sequence is shorter than subject: 330 - 406

Fln protein: VERKERPKLTFCTFCLIFALALLGPVIDQNVYYAGLKLTTPTFSCALSNTLPAMAFVMALLCRMERLSMKQVRSQAKIVGTLLSVGGAMLMTLYTGPAVxxxxSPHPHHPHDDKYVKSASAVPGKDWIKGSLLIIASCLAWAGFFILQAFVATKYSAQLSLTTLICFLGTLQSAALTLVIEHKPSVWAIGWDMNLLTAVYSGVVASGIAYYVQGLCMELKGPVFATAFSPLMMIIVAVMGSIILAETIYLGSVLGAILIVVGLYAVLWGKVKDHKIPTGKNSLQVLPTVDVKANDDTEAAYNKITEVIKGGEGNEQTESKNIGSQEFHV*

Protein Length: 331

Fln nts: GTCGAGAGGAAGGAGCGACCCAAACTCACTTTTTGTACCTTCTGCCTGATATTCGCGCTGGCCTTGTTAGGGCCTGTAATTGATCAAAATGTATATTATGCTGGTCTGAAACTCACCACTCCCACCTTTTCCTGTGCTCTAAGTAATACACTCCCTGCCATGGCTTTTGTAATGGCACTTTTGTGCAGAATGGAAAGATTGAGTATGAAACAAGTACGTAGCCAAGCAAAGATAGTAGGAACCCTGCTGTCAGTTGGTGGAGCAATGTTGATGACATTATACACAGGTCCTGCTGTTxxxxxxxxxxxxTCTCCACATCCACACCATCCTCATGATGACAAATATGTAAAGTCTGCCTCAGCTGTCCCTGGCAAAGACTGGATTAAGGGCTCTCTCTTGATAATTGCCTCATGCCTTGCTTGGGCAGGATTTTTCATTCTCCAGGCTTTTGTTGCAACGAAATATTCAGCTCAACTTTCACTTACCACCTTAATATGCTTTCTGGGAACCTTGCAGTCCGCTGCATTGACTCTTGTTATTGAACACAAGCCTTCTGTATGGGCTATAGGATGGGACATGAACCTTCTAACTGCTGTTTACTCTGGAGTTGTCGCCTCTGGAATTGCATATTATGTACAAGGTCTGTGCATGGAATTAAAAGGACCTGTATTTGCAACAGCATTTAGTCCACTCATGATGATAATAGTGGCAGTCATGGGCTCCATTATTCTTGCTGAGACCATCTACTTGGGGAGTGTGTTGGGAGCAATTCTGATCGTCGTGGGTCTGTATGCTGTGCTGTGGGGCAAAGTCAAGGACCATAAAATACCAACTGGGAAAAACAGCCTGCAAGTGCTTCCTACAGTAGATGTCAAGGCCAATGATGACACTGAAGCTGCTTACAACAAAATCACAGAAGTTATAAAAGGTGGTGAGGGGAATGAACAGACTGAGTCCAAAAATATAGGATCTCAGGAATTCCATGTATAAAACAAAGCAGAGAACGCCATAATATCAATATGTTGACATGGAAGAAGCCACTTACATAACAGTTTCGAAAGACAAATCAGAGAAACTAAGACATTTACTTAATTGTCAGTTTCTTCAGCATAATTATGGACATAGTATGATGGATTTTCTTCATCAGTATAATGGATGAAGTATAGATCTTTCGAAGGGCGCATCCTCATGTGCAAATATTTGTAGAAGTAATTTCCACTTTTATACTGAATTCCTACTTAATGATTGATGAC

Fln Alignment:

sp_v1.1_unigene1415___ERKERPKLTFCTFCLIFALALLGPVIDQNVYYAGLKLTTPTFSCALSNTLPAMAFVMALLCRMERLSMKQVRSQAKIVGTLLSVGGAMLMTLYTGPAVHxxWSPHPHHPHDDKYVKSASAVPGKDWIKGSLLIIASCLAWAGFFILQAFVATKYSAQLSLTTLICFLGTLQSAALTLVIEHKPSVWAIGWDMNLLTAVYSGVVASGIAYYVQGLCMELKGPVFATAFSPLMMIIVAVMGSIILAETIYLGSVLGAILIVVGLYAVLWGKVKDHKIPTGKNSLQVLPTVDVKANDDTEAAYNKITEVIKGGEGNEQTESKNIGSQEFHV*NKAENAIISIC
B8LM15______________ERKVRPKLTFLTFCLIFALGLLGPVIDQNVYYAGLKLTTPTFSCALSNTLPAMTFVMAIVFRMERLSMKQVRSQAKIVGTLLSVGGAMLMTLYKGPAVHxxWSPHHHH--HDKYVKSASAVPDKDWIKGSLLVIASCLAWAGFFVLQAFVAKKYSAQLSLTTLICFLGTLQSAALTLVIEHKPSVWAIGWDMNLLTAVYSGVIASGIAYYVQSLCMELKGPVFATAFSPLMMIIVAVMGSIILAETIYLGSVLGAILIVVGLYAVLWGKVKDHKIPSGKNSLQVLPTEDVKANYDTEAAYNKITEAVKRGDENEQTESKNIGSQEFHGQNKAENAIISIC

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
835		33		66	0.997452
865			75	25	0.996473
904		25	75		0.996473
912		50		50	1.0
919	50	50			1.0
1019		25	75		0.996473
1026	75	25			0.996473
1027		50		50	1.0
1048		75		25	0.996473
1212	16			83	0.994512
1218		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain