SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1400

Length: 1256 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1400

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	protein	-	-	4.97747e-37	45%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	4.97747e-37	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRL2

Fln msg: your sequence is shorter than subject: 221 - 400

Fln protein: RRHIWPRDDELASRRYWQHFDPAWTRTTQDESWSRTGNPASGPILAYSPVQLHSTPQGTPVGPPLHVWGHPTIDQSGSHMWQQLQVGTPTTWQAQDGSFWKHPGVYADAWGCPTVGMPFYPQPMMKLPSNHGHRSTPKPNSTIQGVSVQYPATLDPLNESLLWEKSINEHPPKEVIDEAFKEALNNPWTPLPLGLKPPSMESVMAELQRQGINKIPPPAS*

Protein Length: 222

Fln nts: AGAAGGCACATTTGGCCAAGGGATGATGAACTTGCAAGCAGGCGATATTGGCAGCATTTTGACCCTGCCTGGACTAGAACTACGCAAGATGAATCTTGGAGTCGTACAGGGAATCCTGCTTCTGGACCAATTCTTGCATATTCACCAGTTCAGTTACATTCTACACCACAAGGGACTCCTGTGGGCCCACCTCTTCATGTTTGGGGACATCCCACTATAGATCAATCAGGTAGTCACATGTGGCAGCAACTTCAAGTGGGGACTCCTACTACATGGCAAGCACAAGATGGTTCTTTCTGGAAACATCCAGGGGTATATGCTGATGCTTGGGGTTGCCCCACAGTTGGGATGCCATTCTACCCCCAACCCATGATGAAGCTACCTTCCAATCATGGTCACAGATCAACCCCAAAGCCAAATTCAACAATACAGGGTGTTTCTGTCCAATATCCTGCAACTCTTGATCCACTTAATGAATCTCTTTTATGGGAAAAATCCATTAACGAGCACCCGCCAAAGGAGGTAATTGATGAAGCTTTTAAAGAGGCTTTAAATAACCCTTGGACACCTCTTCCTCTGGGCCTTAAACCTCCATCAATGGAGAGTGTTATGGCAGAGCTCCAGAGGCAAGGCATTAATAAAATTCCACCGCCTGCTTCATAA___GCAGTCATTAGCATGCAGATGGAAAGTCAAACAGTTTGGAATGAAATGGGAATCTAACCAATAACAAGTCTCCCCTGTCAGATCAGAATTGATCCTTTGCTACGTGCTTGTATATTTCTGCATTTCAATGCTACAGAATTTCCCCTTGCTTCTCTGCAAAAAGTGCTAATTTTTGCTGAGAGAGATTATATGCACCTTACATGGTCCAACCTTTTATCAAGGCAGTCATTGAGGAATGCATCAAGTGAAGAAAAAACAAGCTCTGCAAAGGAAACATTTGTAAGATCTCGGCCTAAGCACTCCCTGCAATATCATGTTAGAGGCCTCTGAAGCCACTGGTTGAGAGTATCATGTTAGGCTATAGAGGTGTTTAGAGCTACCTGGTTAAGAGTGAGCTTCTTGGCATTGATCATTTAACCAGTGTGCTTTTTGCATGGCCCGTTTCTCCAAGTGTAGCATTTTGAATTTTATTTTCCAAACTTTCGTTGAATAGTTTATACTGGGCAAGCCTACAAAGCCCACTATTTCAGTGATTTGCAATGTAGGGCCAAAATATTAATATTCAACCTTTGGAATTATTTCTCCAATTTTAA

Fln Alignment:

sp_v1.1_unigene1400___RRHIWPRDDELASRRYWQHFDPAWTRT-TQDESW-SRTGNPA--SGPILAYSPVQLHSTPQGTPVGPPLHVWGHPTIDQSGSHMWQQLQVGTPTTWQAQDGSFWKHPGVYADAW--GCPTVGMPFYPQPMMKLP----SNHGHRSTP-------KP-NSTIQGVSVQYPATLDPLNESLLWEKSINEHPPKEVIDEAFKEALNNPWTPLPLGLKPPSMESVMAELQRQGINKIPPPAS
C0PRL2______________RKHLLAREAEAAT---WNHRRQLYATTGTRARPWIGQNGNPLIQPRPSIGFPPM----APASHAPFRPLHVWGHPTVDHSSVHMWQKHSMPAPAPWPSPDGYFWQQTTACTNPWDHNAPASGTPLYPQPLMRLPLAPVTGVPHFMPPVYNGEYYKPDNSAIHPVNIDVPAHL----------KSSSFHPSKEKVDAAINEVLSNPWTPLPLGLKSPSLESVMAELQRQGIRDVPPASA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
194	14			85	0.993533
196		87	12		0.992554
197	87		12		0.992554
198			12	87	0.992554
228	87	12			0.992554
294		12		87	0.992554
1024		16		83	0.994512
1105	22		66		0.999999
1106	11			88	0.923564
1165		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain