SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1399

Length: 1433 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1399 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DCL protein n=1 Tax=Coffea arabica RepID=Q8RVV8_COFAR	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	defective chloroplasts and leaves dcl	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Copper amine oxidase, N2/N3-terminal	IPR015801	-	0.0	74%
Blast2go	Protein of unknown function DUF3223	IPR021602	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1V5

Fln msg:

Fln protein: MAPNILGTSTITKCSMLNPFYTSVASTANQFLFYNKSFPHQPSLASAWPSSAKPNLNVSTIGLKFPPGSIFKECQNRIHGWNSSESGVEGNDGITPALLERPAYVPKGDDSESVVLGSSDKDEDGPEEEQSITSWVDWEDVILKDTLPLKGLARIIIHSDWYKNGERLIPEHETIILEKLLPYHPELDEKIGCGVDFITVDNHPDFEDSRCLFITRKDGESIDFSYWKCLIGLVKKRYPLYAESFIQKHLRRGRS*

Protein Length: 257

Fln nts: ATGGGAAGGCCATTGTAATATTCCTCTCTTTGGTATCGTGATGCCGGTGTGCTAGGTAGTCTCATTGAAATAGTTTTGTGTCTTTCCACGATACGATGCTATAACGTTTGTGATAAGTAGCTTTCCACCTAGATTTATAGAAATCAAAATAGCAGCCGCTAGCCAATAGAATCTCGAAATAGTTTCCTTTATACTCCCCTCGTCAGCCTTCGGATAAGATAAATGGCGAGTGAGCAGCCACAGGGGATCTTTTACCTTACTGGAGCAGTCGACAATTTGTTCAAAAAAATGCATGGAGGCCACGCTCTCTGAGTCCCCCACAGACCCGCCATTCCA_-_ATGGCACCAAACATCTTGGGAACTTCAACTATAACAAAATGCTCCATGTTAAATCCCTTTTACACCTCAGTAGCTTCCACAGCCAACCAATTTCTCTTTTACAACAAATCCTTCCCACATCAGCCATCTCTAGCCAGTGCATGGCCATCATCAGCAAAACCCAACTTGAATGTCAGTACAATAGGACTTAAATTTCCCCCAGGCTCCATATTCAAAGAATGCCAAAACAGGATACATGGTTGGAACAGCAGTGAGAGTGGGGTTGAAGGGAATGATGGGATTACACCTGCTCTGCTGGAGAGGCCTGCATATGTTCCCAAGGGGGATGACAGTGAGAGTGTTGTTCTTGGGTCTTCTGATAAGGATGAAGATGGGCCAGAGGAGGAGCAGAGTATCACCAGCTGGGTTGATTGGGAAGATGTAATTCTCAAGGATACTCTCCCTCTTAAGGGTCTTGCGAGGATTATAATTCATTCTGACTGGTACAAAAATGGGGAGAGGCTGATACCAGAACATGAGACAATTATTCTTGAAAAGCTTCTTCCATATCATCCAGAGTTAGATGAAAAGATTGGCTGTGGTGTTGATTTTATCACGGTCGACAATCACCCAGATTTTGAAGATTCCCGCTGCTTATTCATCACTCGGAAGGATGGAGAATCAATAGACTTTTCATACTGGAAGTGTTTGATAGGACTTGTCAAGAAAAGATATCCCTTATATGCGGAATCCTTCATACAAAAACACTTAAGACGCGGTCGCAGCTGA___CCTCTTGTTATTCTTCGGTGTCTCTTTGCAATATTTGGGCATAAATGTGTAAACTTGTCAAGGAGAAAGACTCTCATGCACTTTCTTATGTTCGTTTGTGACAGCCATGTGGAAGTGGACTTGCTACCATTCTTTGAAAACATAACCTTGGCAACATTGCTTCCTTGATGTGAAAGAAGACCAAATATCTGGATGCTGCAGAATCACCTCAGCAAGCAGTTTGGATTAAACCCTTTTTCTTTTATTGTTTATTTAGATGTATTTAAATCACCTGCAAATAGAATATTGGAGACTAATCATCAATGATCACCTTAGCAAGTAGAATATTG

Fln Alignment:

sp_v1.1_unigene1399___MAPNILGTSTITKCSMLNPFYTSVASTANQFLFYNKSFPHQPSLASAWPSSAKPNLNVSTIGLKFPPGSIFKECQNRIHGWNSSESGVEGNDGITPALLERPAYVPKGDDSESVVLGSSDKDEDGPEEEQSITSWVDWEDVILKDTLPLKGLARIIIHSDWYKNGERLIPEHETIILEKLLPYHPELDEKIGCGVDFITVDNHPDFEDSRCLFITRKDGESIDFSYWKCLIGLVKKRYPLYAESFIQKHLRRGRS
A9P1V5______________MAPNILGTSTITKCSISGPFYTSVAFTANQLLFHNKSFLNQPSLASAWPSSAKPNLNVSTIGLKFPSGSIFRQCQQRIHCWTSSESGIEGNDGITPALLERPAYVPKEEDSENVFFGPSNKDEDGSEEKQSVTSWVDWEDVILKDTLPLKGLARTILHSDWYQSGERLIPEHETTILEKLLPYHPELEEKIGCGVDFITVDNHPDFGDSRCLFIIRKDGESIDFSYWKCLIGLVRKKYPLYAESFIQKHLKRRNS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
751	83		16		0.994512
1185	33			66	0.997452
1189		33		66	0.997452
1190		33	66		0.997452
1191		33		66	0.997452
1192		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain