SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1398

Length: 2873 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene1398
CGTCGTGACCTTGGCTGTCACTCAATTTTTATGTCATCCCTCCACGCTAGGGAGACCAAGACTTATTAATAGTTCCCTCTTGAAATTGTGTTTAGGTCTGGAGTTAATCGAGGCCAAGGATCGAATCTCCTCGCCTCTCTTTCAAGCTTTTGCTTGCGGCCGGTGGGGATAACGACGAGTGTACCCAGCAGAGGAGGATATTAGAGTCGAATGAGCCGTGGGTGCGTCACAGTCTCTGAATTTGAGTGCGTGTGAGCGCGTCGGGCCGTGAGAAGCCCTGACATATATGTTACTGGAATCTGTGGTATTTCATGTCTACTCCGCTCTGCTACTGGTTACTCGCCCCTCCTTCCGAGGTTTGGCTTCGGATTATTAGTAATCAAGCATTCTTGGTGGAACAACCCGATATTCGGGATTTTAGCGGCAATAGTAAGCTTCTCTTAGAGACCACAGTGTTCGAAGCTTCGACAGCTCTGGAATGATGAAGGAATCACAGGTCTTTGTATTTGGATCCTTCAATGAGGATGAAGCCTCTTCATTTCAGAAGGCCCCAATGGAAGGAGGCTTAAACACATTTAAGCAGAATGGTTTGCAATCTGGTTCATTTGACAGTGGAATTCAGTGTTCATCGAGGAATAAGGAGGTATCATCTAAACAAGCTAGTAATGGTCAAGTGACACAGAGAGACAACTTCAAAGAATTGAATACAAAGTTTGATGCTTCCCATGGTAAAAAATGTTCCATTCCCAATGGGGCAAGTATGGATGAAACTTCCCATGAAGTCAAGGTTTCTATTGCTATTGAACATGAAATAGGTTCACTAATTTCTACTGAGAGGAAATTTTCTGTCACTGATAAATGCATCCTACCTACTGTCAACAAATCTAAACCGCCTCATTTTTCAAATTCTGGTACATTTGCTACAACAAATGATGTTGGCATAACTTCTGCTAATTTGGAATCAAGTGGCAAAGGTGGAAGGATTGAAAATTGTGTGAACCAAATGAGTGATAGAGCTGCATCTGTGCAAGAGTTTGAACTTGAATCCCGGTCTAAGTTGGTGGGAAATAACACCATGCAGCAACTTCTATCTGCAAACGATGACACCGTTGAGGATGCTGTAGAGGATCCAATTTCTTCGCCTACAAACATTCCTTTGTCATGGGCAGCAAGATTTGCAGGAAAGGCTGGCAATGGTCAGGTTTCATATTCTCAGAATGGGGATAAAGGAAGGTCAAAGTTTGGAAAAACATCAACAATGGCTAAGGTTAATCACGGCAACACAACCAGCAGTTCTTTGGCAAGTTTGACCAGCAATGCATCAGGTGGGACAGAAATTACCATGAAAAGACTGCAGCCAAGAGGTCTGGTTAATACTGGAAATCTGTGTTTTCTCAATGCAACACTACAAGCACTCCTATCATGTCCCCCCTTCTTCCAACTTTTACAGACCCTAAAATCTCGTGAAATTCCTGAGGTTGGCTATCCAACACTTCATGCATTTGTTGAGTTTGTGGTCAAGTTTGAGGAAGATGAACCTATTGACCGAGATCTGAAAAAGAATGTAAAGGCAACTGGAGGGATTGAGGTGGGACAGTCCTTTTGTCCAAAGATGTTTGATCCTGTCCTAAAAAGCTTTAGCCCTGACCAGCCTCTTAGTGCTTCAGGAAGGCCCAGGCAAGAAGATGCTCAAGAATTTCTTAGTTTTCTTATGGATCAGTTGCACGATGAACTACTAAAACTGCAAGATAGGGACCTGAATGGATCTGGTGGTAGCAAATTGTCATTGGGTACAGTTACTGGTGATGATGATTGGGAGACTGTTGGCCCTAAGAATCGAACTGCAATAACTAGAACACAAACTTTTATGGAGTCAGAACTAAGTGCTATCTTTGGAGGGCAATTGAGGAGTGTTGTCAAATCAAGAGGAAACAAAGCATCAGCTACCATTCAACGGTTCTTGTTACTTCACTTGGACATTTTACCAGATGCTGTTCATACTGTTGATGATGCTCTTCATCTTTTTGCTTCACCAGAATCACTTGAAGATTATAGAGTTTCCACAGGCAAGGCAGGGGTTGTGAGTGCAAGTAAAGCTGTAAAACTGCAGACGTTGTCTAAGGTGTTGATACTGCACTTAATGCGCTTCAGCTTCGGAAGTACCGGCAGCGGAAAACTACATAAACCTGTTCTCTTCAGTCCTGAGATTGTTCTAAGTCGTGATCTGTTGGTCTCTCCAACAACAGAGGGTCGGAGATATGAATTAGTAGCTACTGTAAGCCACCATGGCAAGGACCCTTCCAAGGGGCATTATACAGCCGACACGAAACGTCCCAATGGCCAGTGGCTTCGATTTGATGATGCAGCTGTGTCTGTTGTGAGTTTGAACAAAGTGTTGCATGATCAAGCGTACCTTTTATTTTATAAACAGATATAAGGTTTTGGAATTATCCGATGCCTCCCACTTGCAAAACTCATTTAATTTAATTATTCCCATCTATTACTTAACACAGCCCCTTGACAGTCCCTTGAGTTTGCTAGCCTCAAGGATTTAAAAGGCTTCTAGTTTGCAGTTCTACAGATGTAAAACATTATGCTACAGATACAAATCTAAGCTACTGTTGGAAAGTTGGATTTTCCCTGGAAGGCATCCGAAATCCTTTGTGGATGCATAAGAGTTTGAAGCACCATCCGTTATTGAGTTTTCATGTTTTTGGTACTGTTTTCTGGATCAATTTGTTACTATTCAGGCTGTATATCCTTGTAGCAGTGAGCATATGCCATTTTCATATGTTTCATGTTCTTATGAAGAAAGTAAATTATTCAATGACGGTGCACAACTGCAATGGATTCTTTTATTCATAATAATTATT

Ace file of the UniGene sp_v1.1_unigene1398 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SQ20_VITVI	-	-	63%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 24; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	ubiquitin-specific protease 24	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	71%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FPS3

Fln msg: your sequence is longer than subject: 653 - 551

Fln protein: MMKESQVFVFGSFNEDEASSFQKAPMEGGLNTFKQNGLQSGSFDSGIQCSSRNKEVSSKQASNGQVTQRDNFKELNTKFDASHGKKCSIPNGASMDETSHEVKVSIAIEHEIGSLISTERKFSVTDKCILPTVNKSKPPHFSNSGTFATTNDVGITSANLESSGKGGRIENCVNQMSDRAASVQEFELESRSKLVGNNTMQQLLSANDDTVEDAVEDPISSPTNIPLSWAARFAGKAGNGQVSYSQNGDKGRSKFGKTSTMAKVNHGNTTSSSLASLTSNASGGTEITMKRLQPRGLVNTGNLCFLNATLQALLSCPPFFQLLQTLKSREIPEVGYPTLHAFVEFVVKFEEDEPIDRDLKKNVKATGGIEVGQSFCPKMFDPVLKSFSPDQPLSASGRPRQEDAQEFLSFLMDQLHDELLKLQDRDLNGSGGSKLSLGTVTGDDDWETVGPKNRTAITRTQTFMESELSAIFGGQLRSVVKSRGNKASATIQRFLLLHLDILPDAVHTVDDALHLFASPESLEDYRVSTGKAGVVSASKAVKLQTLSKVLILHLMRFSFGSTGSGKLHKPVLFSPEIVLSRDLLVSPTTEGRRYELVATVSHHGKDPSKGHYTADTKRPNGQWLRFDDAAVSVVSLNKVLHDQAYLLFYKQI*

Protein Length: 654

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTATGTCATCCCTCCACGCTAGGGAGACCAAGACTTATTAATAGTTCCCTCTTGAAATTGTGTTTAGGTCTGGAGTTAATCGAGGCCAAGGATCGAATCTCCTCGCCTCTCTTTCAAGCTTTTGCTTGCGGCCGGTGGGGATAACGACGAGTGTACCCAGCAGAGGAGGATATTAGAGTCGAATGAGCCGTGGGTGCGTCACAGTCTCTGAATTTGAGTGCGTGTGAGCGCGTCGGGCCGTGAGAAGCCCTGACATATATGTTACTGGAATCTGTGGTATTTCATGTCTACTCCGCTCTGCTACTGGTTACTCGCCCCTCCTTCCGAGGTTTGGCTTCGGATTATTAGTAATCAAGCATTCTTGGTGGAACAACCCGATATTCGGGATTTTAGCGGCAATAGTAAGCTTCTCTTAGAGACCACAGTGTTCGAAGCTTCGACAGCTCTGGA_-_ATGATGAAGGAATCACAGGTCTTTGTATTTGGATCCTTCAATGAGGATGAAGCCTCTTCATTTCAGAAGGCCCCAATGGAAGGAGGCTTAAACACATTTAAGCAGAATGGTTTGCAATCTGGTTCATTTGACAGTGGAATTCAGTGTTCATCGAGGAATAAGGAGGTATCATCTAAACAAGCTAGTAATGGTCAAGTGACACAGAGAGACAACTTCAAAGAATTGAATACAAAGTTTGATGCTTCCCATGGTAAAAAATGTTCCATTCCCAATGGGGCAAGTATGGATGAAACTTCCCATGAAGTCAAGGTTTCTATTGCTATTGAACATGAAATAGGTTCACTAATTTCTACTGAGAGGAAATTTTCTGTCACTGATAAATGCATCCTACCTACTGTCAACAAATCTAAACCGCCTCATTTTTCAAATTCTGGTACATTTGCTACAACAAATGATGTTGGCATAACTTCTGCTAATTTGGAATCAAGTGGCAAAGGTGGAAGGATTGAAAATTGTGTGAACCAAATGAGTGATAGAGCTGCATCTGTGCAAGAGTTTGAACTTGAATCCCGGTCTAAGTTGGTGGGAAATAACACCATGCAGCAACTTCTATCTGCAAACGATGACACCGTTGAGGATGCTGTAGAGGATCCAATTTCTTCGCCTACAAACATTCCTTTGTCATGGGCAGCAAGATTTGCAGGAAAGGCTGGCAATGGTCAGGTTTCATATTCTCAGAATGGGGATAAAGGAAGGTCAAAGTTTGGAAAAACATCAACAATGGCTAAGGTTAATCACGGCAACACAACCAGCAGTTCTTTGGCAAGTTTGACCAGCAATGCATCAGGTGGGACAGAAATTACCATGAAAAGACTGCAGCCAAGAGGTCTGGTTAATACTGGAAATCTGTGTTTTCTCAATGCAACACTACAAGCACTCCTATCATGTCCCCCCTTCTTCCAACTTTTACAGACCCTAAAATCTCGTGAAATTCCTGAGGTTGGCTATCCAACACTTCATGCATTTGTTGAGTTTGTGGTCAAGTTTGAGGAAGATGAACCTATTGACCGAGATCTGAAAAAGAATGTAAAGGCAACTGGAGGGATTGAGGTGGGACAGTCCTTTTGTCCAAAGATGTTTGATCCTGTCCTAAAAAGCTTTAGCCCTGACCAGCCTCTTAGTGCTTCAGGAAGGCCCAGGCAAGAAGATGCTCAAGAATTTCTTAGTTTTCTTATGGATCAGTTGCACGATGAACTACTAAAACTGCAAGATAGGGACCTGAATGGATCTGGTGGTAGCAAATTGTCATTGGGTACAGTTACTGGTGATGATGATTGGGAGACTGTTGGCCCTAAGAATCGAACTGCAATAACTAGAACACAAACTTTTATGGAGTCAGAACTAAGTGCTATCTTTGGAGGGCAATTGAGGAGTGTTGTCAAATCAAGAGGAAACAAAGCATCAGCTACCATTCAACGGTTCTTGTTACTTCACTTGGACATTTTACCAGATGCTGTTCATACTGTTGATGATGCTCTTCATCTTTTTGCTTCACCAGAATCACTTGAAGATTATAGAGTTTCCACAGGCAAGGCAGGGGTTGTGAGTGCAAGTAAAGCTGTAAAACTGCAGACGTTGTCTAAGGTGTTGATACTGCACTTAATGCGCTTCAGCTTCGGAAGTACCGGCAGCGGAAAACTACATAAACCTGTTCTCTTCAGTCCTGAGATTGTTCTAAGTCGTGATCTGTTGGTCTCTCCAACAACAGAGGGTCGGAGATATGAATTAGTAGCTACTGTAAGCCACCATGGCAAGGACCCTTCCAAGGGGCATTATACAGCCGACACGAAACGTCCCAATGGCCAGTGGCTTCGATTTGATGATGCAGCTGTGTCTGTTGTGAGTTTGAACAAAGTGTTGCATGATCAAGCGTACCTTTTATTTTATAAACAGATATAA___GGTTTTGGAATTATCCGATGCCTCCCACTTGCAAAACTCATTTAATTTAATTATTCCCATCTATTACTTAACACAGCCCCTTGACAGTCCCTTGAGTTTGCTAGCCTCAAGGATTTAAAAGGCTTCTAGTTTGCAGTTCTACAGATGTAAAACATTATGCTACAGATACAAATCTAAGCTACTGTTGGAAAGTTGGATTTTCCCTGGAAGGCATCCGAAATCCTTTGTGGATGCATAAGAGTTTGAAGCACCATCCGTTATTGAGTTTTCATGTTTTTGGTACTGTTTTCTGGATCAATTTGTTACTATTCAGGCTGTATATCCTTGTAGCAGTGAGCATATGCCATTTTCATATGTTTCATGTTCTTATGAAGAAAGTAAATTATTCAATGACGGTGCACAACTGCAATGGATTCTTTTATTCATAATAATTATT

Fln Alignment:

sp_v1.1_unigene1398___MKRLQPRGLVNTGNLCFLNATLQALLSCPPFFQLLQTLKSREIPEVGYPTLHAXXXXXXXXXEDEPIDRDLKKNVKATGGIEVGQSFCPKMFDPVLKSFSPDQPLSASGRPRQEDAQEFLSFLMDQLHDELLKLQDRDXXXXXXXXXXXGTVTGD-DDWETVGPKNRTAITRTQTFMESELSAIFGGQLRSVVKSRGNKASATIQRFLLLHLDILPDAVHTVDDALHLFASPESLEDYRVS-TGKAGVVSASKAVKLQTLSKVLILHLMRFSFGSTGSGKLHKPVLFSPEIVLSRDLLVSPTTEGRRYELVATVSHHGKDPSKGHYTADTKRPNGQWLRFDDAAVSVVSLNKVLHDQAYLLFYKQI
Q9FPS3______________VKDFTPRGLINAGNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPTLAAFSEFISEL--DVPSSSSIRNNVTV---VEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGDEWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVLHDQAYVLFYKQV

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
2231	10	90			0.90298
2232			10	90	0.90298
2235	10			90	0.90298
2236	10			90	0.90298
2237	90		10		0.90298
2238			10	90	0.90298
2241	10	90			0.90298
2246		10		90	0.90298
2341	90			10	0.90298
2343	10		90		0.90298
2345	10			90	0.90298
2346			10	90	0.90298
2349	10			90	0.90298
2350		90	10		0.90298
2351		90	10		0.90298
2355		10		90	0.90298
2359	90	10			0.90298
2407		83		16	0.994512
2460		60		40	1.0
2465	60		40		1.0
2467	60		40		1.0
2468	40			60	1.0
2470	40		60		1.0
2472		40	60		1.0
2473		40		60	1.0
2474	40			60	1.0
2477			40	60	1.0
2483		60	40		1.0
2485	60	40			1.0
2752		80	20		0.995493
2782	80	20			0.995493
2783	80	20			0.995493
2787		80		20	0.995493
2818			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain