SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1396

Length: 1150 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1396 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thermostable beta-glucosidase B, putative	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	thermostable beta-glucosidase	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning,

Fln protein: EAVDIAAKADAVVIVVGLDLTQETEDHDRVNLTLPGQQQRLVSEVAVASKGPVVLVLMCGGPVDVSFAKDDPRISSILWVGYPGEAGGQALAEIIFGDYNPGGRLPMTWYPQEFINVPMTDMNMRPNSSTGYPGRTYRFYTGKTVFQFGEGLSYSNYSYKFSSKDGHIILPFSSPSYGEWASDYIDIDDIPCESFKFTTKLTVQNHGSMDGSHVVLLFSRYGGNFRGAPHKQLIDFKRVHIVAGKTTDVSFLVNPCKHFGMVMEDGRRVLAIGKHELMVGDTRLSVSLTTSFLGRK*

Protein Length: 298

Fln nts: GTGAAGCAGTAGATATTGCAGCTAAAGCAGATGCTGTGGTTATTGTTGTGGGGTTGGATCTCACACAGGAAACGGAAGATCATGACAGAGTAAATTTAACCCTCCCAGGGCAACAACAGAGACTAGTATCTGAAGTTGCTGTTGCTTCAAAGGGACCTGTGGTACTTGTTCTCATGTGTGGGGGTCCAGTGGATGTCTCATTTGCAAAGGATGATCCTCGAATTTCAAGTATATTGTGGGTGGGCTATCCTGGTGAAGCTGGAGGCCAAGCACTAGCTGAAATTATTTTTGGAGATTACAATCCAGGTGGCAGGCTACCTATGACATGGTATCCTCAAGAATTTATCAATGTACCTATGACAGACATGAATATGCGACCTAATTCTTCAACAGGCTATCCAGGCCGAACCTACCGGTTTTACACTGGAAAAACAGTCTTCCAATTTGGCGAAGGTTTGAGTTATTCAAACTACTCATACAAATTTTCCTCGAAGGATGGGCATATTATTCTGCCATTTTCTTCACCATCGTACGGAGAGTGGGCATCTGACTACATTGATATAGATGATATACCATGTGAAAGTTTTAAATTTACCACTAAACTTACTGTACAAAACCATGGTAGCATGGATGGGAGTCATGTTGTACTGTTATTTTCAAGATATGGTGGAAATTTCAGAGGAGCTCCACACAAGCAACTAATTGACTTTAAACGTGTCCATATCGTTGCTGGTAAAACCACTGATGTGAGCTTTCTTGTTAATCCTTGCAAGCACTTTGGTATGGTGATGGAGGATGGGAGAAGGGTCTTAGCGATTGGAAAGCATGAACTGATGGTTGGAGATACTCGACTTTCTGTTTCCTTGACAACAAGCTTCTTGGGTAGAAAATGA___CATTATTTTGTTCAGCCTTTGCTCACTGTTGTTTCAAAAAATGTTGGCATTTCAAAAACATTTTTACTGTTTATCCAAGTGTAATTGATTCATTCTCTATTTTTAGTATTTTATCCTAACAGCACCCAGGCAATTTGTTCCTTAAACAGGTTTAAGGAGTGGATCTTTATCTGATACTAGGAAGTATTTATAGTATTATACTAAGGATGTAATTCTGAAAACTGACCATATTAATTAGTGAAATGAGTAAAAGTTTT

Fln Alignment:

sp_v1.1_unigene1396___GLDLTQETEDHDRVNLTLPGQQQRLVSEVAVASKGPVVLVLMCGGPVDVSFAKDDPRISSILWVGYPGEAGGQALAEIIFGDYNPGGRLPMTWYPQEFINVPMTDMNMRPNSSTGYPGRTYRFYTGKTVFQFGEGL-----XXXXXXXXXXXKDGHIILPFSSPSYGEWASDYIDIDDIPCESFKFTTKLTVQNHGSMDGSHVVLLFSRYGGNFRGAPHKQLIDFKRVHIVAGKTTDVSFLVNPCKHFGMVMEDGRRVLAIGKHELMVGDTRLSVSLTTSFLGR
D5ABI5______________GLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDFVKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVTMEHFE-ALGNRGKGHVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSLVTKHLNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain