SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1387

Length: 2308 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene1387
GGAAAGCTGAGAGAGTACTTTGAGAATGTAGATCGTACATGGGGGAAATTTGAGAAGACATTATGGGGACACATATCGAATTTCTTTAAGCTTGCTAAGGAGAGTCCTCACACTTTGGTACATGCATTAAGGGTGGTTGAGATGCAGGAGATTCTTGATCAACAACTAGCAGAGGAAGCCGCTGAAGCTGAGGGAGCAGGGGCTATGGCTTCAATAACAAACCCTCGAAGAGTCACAAAAAAGCCATTGATTCCACCGGCTTCTTCAGGAGGTTTAGTCCATGAACAGATGAATGGCCAGGGAAAGTGCTACAAAGACAAATGTTATGAGGAGATCCGGAAATCTGTCGAAGCCCGCTTTGACAATTTGCTCTCTAAGCTTGTTTTTGAGGATTTAAAGGCTGCACTAGAAGAGGCACGCGTGGTTGCAGAGGAGCTCGCTGATATCTATGACTTTGTGGCACCCTGTTTTCCTCCAAGATATGAAATATTTCAACTTACGGTGCAGCTTTATACTGAGAGATTCATTCAAATGCTTAGGTTGCTAAGTGACAGAGCAAATGAGTTGTCGAACATTGAGATTTTGAAGGTAACAGGATGGGTTGTTGAGTACCAAGACCTCCTTGTAGGTCTTGGTGTGGATGATTCTTTAGCTCAAGTATGTGCTGAAAGTGGTGCAATGGATCCTCTAATGAGTGCCTATGTTGAGCGTATGCAAGCTACAATGCAGAAATGGTATACAAACATATTGGAAGCAGATAAAGGCCGCCTACCAAAGAAAACAGAAGATGGGAAGCTATACACTCCAGCAGCGGTTGATTTATTTAGAATTCTTGGTGAACAAGTGCAGATTGTTCAAGAAAATAGCACTGATGTAATGCTATATAGGATAGCTCTTTCTGTTATTCAGGTAATGGTAGATTTTCAGGCAGCTGAGAGGCAAAGTCTTGAGGAGCCAGTTGCAGAAATTGGGTTGGAATCATTATGTGCAATGGTAAACAACAATCTGCGTTGTTATGATCTAGCAATGGAACTGAGTAGCAGCACGATGGAAGCCTTGACTCCTTACTATGCTGAACAGGTTAATTTTGAAGATACTTGCAAAGGCTTTCTTGAAGTAGCAAAGGAAGCAGTGCACCAGACCGTTAACATAATATTTGAGGATTCTGGTGTTAAGGAGTTGCTTGCAAATCTGTACAAAAAAGAGTGGTTTGAAGGAACTGTAACTGAATACTTGGTTGCCACATTTGGAGACTATTTTACTGATGTGAAATTGTATATAGAAGAAAGGTCCTTTAGGAGGTTTGTTGAAGCTTGCTTAGAAGAGGCAGTTGTGGTTTACATTGATCATCTCCTTACTCAGAAAAACTACATCAAGGAGAAAACACTTGAAAGGATGCGTGTTGACGAGGAAGTATTCTTGGATTTTTTCAGGGATTATATTGATTTATCTAAAGTAGAGAAAAGAGTGCAACCTTTGGCAGATTTGCGAGAACTTGCTTCTGCTGAGAGTGTGGAATTTTTTACTCTTGTCTACTCAAACATTCTCCAAAACCACCCTGATTGTCCGCCTGAAGTTGTAGAGAAGGTCATTGCATTACGAGAAGGAATACCAAGGAAGGATGCCCGTGAGATACTACAAGAATGCAAGGATATATATAACACTTCTCTTGATAATGGAGATTTACCCAAGCCTGGATTTCTCTTTGCCCGACTAACTTGTCTTCCAAAGGCGACTCTTCGAAAGCAGCTTTAATTCATTCAATAGTTACCGCAGATTCTATAACGTGAAAGTAATTTACCAATCATTTCATCTTGGAGATGACTTTGTTGCACAATGTGTTGTCTGTAATTAATGTCCACAGAAGAAGTGGAAAAGAAGGAAAATGGCATTTGTTGTTGATTCATAATCTGAATGATAGATGATAATAGAAGAAATTCATTGGGATGTGAATGTTGTTCCTAGGGATTTGAAAGGCACTCTTTTTCTACCTATTTTTCAGGTCGACTTGATACACGATTATTCCAAATATATTTTTAATTTTATATTTAGCTCTTAAAATGCTTATTCAACCGATGCTTTCTCAAAAGGAAACATTTGTGACAAAGTCTACTTTTATGTGAGCCATAAAAGAGTGCACGAGGACTTGGAACTATGTGCAAGTACGCACTGTGTCACTTTTCTTACGATTTTACACATCTTTACCTATTACATCACTCTTTTTATGGTGAGGTAATCATTGAGGACACAAACATTGAATGTAAGCCCATAGCATGAGCACTTTGAAATAACATACAATGTGGCATAT

Ace file of the UniGene sp_v1.1_unigene1387 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SEC6 n=3 Tax=Arabidopsis thaliana RepID=Q8RVQ6_ARATH	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	exocyst complex component	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	87%
Blast2go	pollen tube growth	GO:0009860	Biological Process	87%
Blast2go	exocyst	GO:0000145	Cellular Component	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exocyst complex component Sec6	IPR010326	-	0.0	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP5

Fln msg: your sequence is shorter than subject: 585 - 756

Fln protein: GKLREYFENVDRTWGKFEKTLWGHISNFFKLAKESPHTLVHALRVVEMQEILDQQLAEEAAEAEGAGAMASITNPRRVTKKPLIPPASSGGLVHEQMNGQGKCYKDKCYEEIRKSVEARFDNLLSKLVFEDLKAALEEARVVAEELADIYDFVAPCFPPRYEIFQLTVQLYTERFIQMLRLLSDRANELSNIEILKVTGWVVEYQDLLVGLGVDDSLAQVCAESGAMDPLMSAYVERMQATMQKWYTNILEADKGRLPKKTEDGKLYTPAAVDLFRILGEQVQIVQENSTDVMLYRIALSVIQVMVDFQAAERQSLEEPVAEIGLESLCAMVNNNLRCYDLAMELSSSTMEALTPYYAEQVNFEDTCKGFLEVAKEAVHQTVNIIFEDSGVKELLANLYKKEWFEGTVTEYLVATFGDYFTDVKLYIEERSFRRFVEACLEEAVVVYIDHLLTQKNYIKEKTLERMRVDEEVFLDFFRDYIDLSKVEKRVQPLADLRELASAESVEFFTLVYSNILQNHPDCPPEVVEKVIALREGIPRKDAREILQECKDIYNTSLDNGDLPKPGFLFARLTCLPKATLRKQL*

Protein Length: 586

Fln nts: GGAAAGCTGAGAGAGTACTTTGAGAATGTAGATCGTACATGGGGGAAATTTGAGAAGACATTATGGGGACACATATCGAATTTCTTTAAGCTTGCTAAGGAGAGTCCTCACACTTTGGTACATGCATTAAGGGTGGTTGAGATGCAGGAGATTCTTGATCAACAACTAGCAGAGGAAGCCGCTGAAGCTGAGGGAGCAGGGGCTATGGCTTCAATAACAAACCCTCGAAGAGTCACAAAAAAGCCATTGATTCCACCGGCTTCTTCAGGAGGTTTAGTCCATGAACAGATGAATGGCCAGGGAAAGTGCTACAAAGACAAATGTTATGAGGAGATCCGGAAATCTGTCGAAGCCCGCTTTGACAATTTGCTCTCTAAGCTTGTTTTTGAGGATTTAAAGGCTGCACTAGAAGAGGCACGCGTGGTTGCAGAGGAGCTCGCTGATATCTATGACTTTGTGGCACCCTGTTTTCCTCCAAGATATGAAATATTTCAACTTACGGTGCAGCTTTATACTGAGAGATTCATTCAAATGCTTAGGTTGCTAAGTGACAGAGCAAATGAGTTGTCGAACATTGAGATTTTGAAGGTAACAGGATGGGTTGTTGAGTACCAAGACCTCCTTGTAGGTCTTGGTGTGGATGATTCTTTAGCTCAAGTATGTGCTGAAAGTGGTGCAATGGATCCTCTAATGAGTGCCTATGTTGAGCGTATGCAAGCTACAATGCAGAAATGGTATACAAACATATTGGAAGCAGATAAAGGCCGCCTACCAAAGAAAACAGAAGATGGGAAGCTATACACTCCAGCAGCGGTTGATTTATTTAGAATTCTTGGTGAACAAGTGCAGATTGTTCAAGAAAATAGCACTGATGTAATGCTATATAGGATAGCTCTTTCTGTTATTCAGGTAATGGTAGATTTTCAGGCAGCTGAGAGGCAAAGTCTTGAGGAGCCAGTTGCAGAAATTGGGTTGGAATCATTATGTGCAATGGTAAACAACAATCTGCGTTGTTATGATCTAGCAATGGAACTGAGTAGCAGCACGATGGAAGCCTTGACTCCTTACTATGCTGAACAGGTTAATTTTGAAGATACTTGCAAAGGCTTTCTTGAAGTAGCAAAGGAAGCAGTGCACCAGACCGTTAACATAATATTTGAGGATTCTGGTGTTAAGGAGTTGCTTGCAAATCTGTACAAAAAAGAGTGGTTTGAAGGAACTGTAACTGAATACTTGGTTGCCACATTTGGAGACTATTTTACTGATGTGAAATTGTATATAGAAGAAAGGTCCTTTAGGAGGTTTGTTGAAGCTTGCTTAGAAGAGGCAGTTGTGGTTTACATTGATCATCTCCTTACTCAGAAAAACTACATCAAGGAGAAAACACTTGAAAGGATGCGTGTTGACGAGGAAGTATTCTTGGATTTTTTCAGGGATTATATTGATTTATCTAAAGTAGAGAAAAGAGTGCAACCTTTGGCAGATTTGCGAGAACTTGCTTCTGCTGAGAGTGTGGAATTTTTTACTCTTGTCTACTCAAACATTCTCCAAAACCACCCTGATTGTCCGCCTGAAGTTGTAGAGAAGGTCATTGCATTACGAGAAGGAATACCAAGGAAGGATGCCCGTGAGATACTACAAGAATGCAAGGATATATATAACACTTCTCTTGATAATGGAGATTTACCCAAGCCTGGATTTCTCTTTGCCCGACTAACTTGTCTTCCAAAGGCGACTCTTCGAAAGCAGCTTTAA___TTCATTCAATAGTTACCGCAGATTCTATAACGTGAAAGTAATTTACCAATCATTTCATCTTGGAGATGACTTTGTTGCACAATGTGTTGTCTGTAATTAATGTCCACAGAAGAAGTGGAAAAGAAGGAAAATGGCATTTGTTGTTGATTCATAATCTGAATGATAGATGATAATAGAAGAAATTCATTGGGATGTGAATGTTGTTCCTAGGGATTTGAAAGGCACTCTTTTTCTACCTATTTTTCAGGTCGACTTGATACACGATTATTCCAAATATATTTTTAATTTTATATTTAGCTCTTAAAATGCTTATTCAACCGATGCTTTCTCAAAAGGAAACATTTGTGACAAAGTCTACTTTTATGTGAGCCATAAAAGAGTGCACGAGGACTTGGAACTATGTGCAAGTACGCACTGTGTCACTTTTCTTACGATTTTACACATCTTTACCTATTACATCACTCTTTTTATGGTGAGGTAATCATTGAGGACACAAACATTGAATGTAAGCCCATAGCATGAGCACTTTGAAATAACATACAATGTGGCATAT

Fln Alignment:

sp_v1.1_unigene1387___GKLREYFENVDRTWGKFEKTLWGHISNFFKLAKESPHTLVHALRVVEMQEILDQQLXXXXXXXXXXXAMASITNPRRVTKKPLIPPASSGGLVHEQMNGQGKCYKDKCYEEIRKSVEARFDNLLSKLVFEDLKXXXXXXXXXXXXXADIYDFVAPCFPPRYEIFQLTVQLYTERFIQMLRLLSDRANELSNIEILKVTGWVVEYQXXXXXXXXXDSLAQVCAESGAMDPLMSAYVERMQATMQKWYTNILEADKGRLPKKTEDGKLYTPAAVDLFRILGEQVQIVQENSTDVMLYRIALSVIQVMVDFQAAERQSLEEPVAEIGLESLCAMVNNNLRCYDLAMELSSSTMEALTPYYAEQVNFEDTCKGFLEVAKEAVHQTVNIIFEDSGVKELLANLYKKEWFEGTVTEYLVATFGDYFTDVKLYIEERSFRRFVEACLEEAVVVYIDHLLTQKNYIKEKTLERMRVDEEVFLDFFRDYIDLSKVEKRVQPLADLRELASAESVEFFTLVYSNILQNHPDCPPEVVEKVIALREGIPRKDAREILQECKDIYNTSLDNGDLPKPGFLFARLTCLPKATLRK
B8LQP5______________GKLREYFENVDRTWGKFEKTLWGHISNFFKLAKESPHTLVHALRVVEMQEILDQQLAEEAAEAEGGGAIASITNPRRVTKKPLIPPASSGGLVHEQMNGQGKCYKDKCYEEIRKSVEARFDNLLSKLIFEDLKAALEEARMVAEELADIYDFVAPCFPPRYEIFQLTVQLYTERFIQMLRLLSDRANELSNIEILKVTGWVVEYQDLLVGLGVDDSLAQVCAESGAMDPLMNAYVERMQATMQKWYTNILEADKGRLPKKTEDGKLYTPAAVDLFRILGEQVQIVQENSTDVMLYRIALSVIQVMVDFQAAERQSLEEPVAEIGLEPLCAMVNNNLRCYDLAMDLSSSTMEALTPYYAEQVNFEDTCKGFLEVAKEAVHQTVNIIFEDAGVKDLLANLYQKEWYEGTVTEYLVATFGDYFNDVKLYIEERSFRRFVEACLEEAVVVYIDHLLTQKNYIKEKTIERMRVDEEVFLDFFREYINLSKVEKRVQPLADLRELASAESVEFFTLVYSNILQNHPDCPPEVVEKVIALREGIPRKDAREILQECKEIYNTSLDNGDLPKPGFLFARLTCLPKATLRK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1685	25	75			0.996473
1734	80		20		0.995493
2123		14	85		0.993533
2125		14		85	0.993533
2129			85	14	0.993533
2273			75	25	0.996473
2274			25	75	0.996473
2280		66	33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain