SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1372

Length: 4105 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1372
CGTCGTGACCTTGGCTGTCACGCAAAGTTGGAAAAAGGGAAAGGCCAGCACAATAGTTGGGCACGGCACCGCACCAAGATCGTTCTCCAATCTGCCCTGCTACTACATGGAAACAGGTACAGGTCGCTGGATCGATCTTTAGAATCTCTAGATCGATTCCCGTTCTTCGAATTGATTGAACTCTGACGTCTTCGCTGCAGATTTGGTCTATATTTTCACATGAAATGCTGCAGTGATTCGTTGGCAGTTAGGGTTTCAGGGTTGAATTTGGATGCGTTAAGGGATCGGCGGATCGAGGAGGATATCTTCAATGGCTCGCCCACAAAACATCGATTTGTTCGACGCCTATTTTCGCAGGGCAGATTTGGACCACGATGGCAGGATCAGTGGCAATGAAGCCTTGGTCTTCTTTCAGGGGGCCAATTTACCCAAGCAAATACTTGCACAGATATGGATGCATGCTGATCAAAATGGCACTGGCTTCCTTGGAAGGGCACAGTTTTACAATGCTTTAAAGCTAGTAACTGTAGCACAGAGTGGTCGTGAGTTAACACAAGACATTGTGAGGGCAGCTTTGTTTGGACCAGCAGCATCTCAAATTCCTGCACCCCAAATTTCACCACCTACTGCAGCTACACCATCTCCCGTTCTTCCCTCAGCGGGCATTAGAGTTCCCACGATACAACCGAGTGTGGGAGCTGCTCAGCAGTATGTGTCTCCAGGAAATAATCAGTTTTTACGGCCTGTGTCTCCAACAACTATTCCAACGCCAACCCCTTTGCAGGGAGCTTCCATGGGAATTCCTGGAGTTGGTACAACAGGTCAGCGGCCACAAATTTCTAGTGGTTTGGCAGAGTGGCCAGGTTCACGGATTGCTGGACCAACTTCCATTGGACCTATTAGCAATGTTTCTGCTGCACAGGGTGTTCAAATTAGGGGGAGTGCTCCCTCGCTTCTCAAGCAGCAAGATGGTCTCAGACAAACAAGTTCAGCTTTCCAAGGAGGGTCAATTCCATCAGTACTATCAAAACCTCTGCAAGATAACATAAAATCCAGCTTGTCTGCAGGATTAAGTGATGTTAAAGGCATGTCTGCTGATGGAAATGGTTTTTCTTCAGATTCAATTTTTGGTGGAGATGTGTTTTCTGCTACCCCCTCTCAATCTAAACAAATTGTAGCTTCCCAGCCCCTATATTCAGTCAACAATGTTTCGTCTTCTACGGCTCTTGTACCAACACCGGCTGGACCTGCTGCAGCTCTGGCTAAGCAGAATCAGCTAGATATATCACAGAGCACATCAATTGTGCCTGTATCTATTGGAGTTGGTGCAACAGCGTCAAGCACGGGAGGAAACACCCAACTGTCCTGGCCAAGGATGATGCAGTCTGATGCTCAAAAGTATACCAAGGTTTTCTCTGAGGTGGACACCGACAGGGATGGTAAAATTACTGGTGAACAAGCTCGTGATCTTTTCCTGAGCTGGAAGCTTCCAAGAGACGTTTTAAAGCAGGTCTGGGACTTGTCTGACCAGGATGGGGACAGTATGCTTTCCTTAAAGGGAGTTCTGCCATGCACTCTATCTGATGGAACGATATAGAGAAGGCCGTCCCCTTCCTCCAGTGCTTCCCACTGGTATTCAAATTGATGAAGCACTGAAGCCTGGAGCTGAAATGCAAACTACTACACAGCGTTCAGCTGCGTTCAGTGGAATGCCTTGGCAGCATAACCCAGTCATGGTTTCTCGGCCTGGTATGCATGGTCCTGTTCCCGGGAATATGCCAGGGCAATTTCAAACACCTCGAAGTGATGGACTGAATACTGAACAGTCAGTTCAGCAGAAGTCCCGAGTGCCAGTTTTGGAAACGAATTTTGTAAATCAGCTAAGCCGGGATGAGCAGAACACTTTGAAGTCAAAACAGAAGGATGCAGAAGAAGCAGAGAAAAAGGTACAAGAGTTAGAGAAGGATATTATGGATTCAAAGGAGAAGATTGAATTCTATCGATCTAAGCTTCAGGAACTTGTTCTGTACAAGAGCAGGTGTGACAATCGAATAAATGAAATTACAGAAAGAGCAGCTGCAGACAAACGTGAGGTTGAATCTCTGTCCAAGAAGTATGAGGAAAAACTCAAGCAGGCAGGTGAATCAAGTGCTCGTATGGCATCGGAGGAAGCTGCATTTAGAGATATTCAGGAACGGAAACTGGAATTATACAATGCAATTGTGAGAATGGAACAAGGAGGGAATGCAGATAGCCTTCTTCAGGTTCGAGCAGATCGCATTCAAACAGATATGGAGGAGCTAAGAAAAGCACTGAATGAACGTTGCAAGCAATTAAGTCTGCGCACAAAGCCAACTGCATTGATTGAGCTACCTTATGGCTGGCAACCTGGTATTCAGCAGAATGCAGCTGAGTGGGATGATGACTGGGATAAATTTGAGGATGAAGGTTTCTCTGCTGTTCAGGATCTGATGAATGAAGGGGCTGCACCCACTCTCTCTGCAAAGACTAGTTCAGCTTTGGCATGGGATGATAGCAGTCCTCTTGAAAGCGGATTTGATTTATCTTCTTCATCAAACTTAGATAGGAAAAGTGAGAATTCTTCCTCTACGGGACATCCACATACAGCAAATGGATCTTCTTATGCACATAGTGAAGATGGGTCTGTTAAAAGTGCACCTGGCAGTCCCCGAAGCCGAAGTATGCCTGGAAGCCCACAACGGGAGATTTCAACAGTTAAAGAAACTCGAAGCAATGATCACCGCACAACATCCTCCAACTCTGGTGATCCATTTGGTGATGGAGGCTCGTGGGAGGCTGCATTTGTTGATGAAAACGACTCATTATGGGGCAATGACAAAAGTGCTGTTGATGCTAATAAGAATTCATCAGATCTAAGTAGCTCAGCACTTACTTTTGATGGGGGTCGTGAAAGGCAGCTAGACAATCCAAAATTTGACTCTGTAGATTCCTTCCAGTTAAAATCCCTGAAAATCACAAGCTTCGATACTGAGGAGGGTGACAATGAGAATTATGACACCTTTGGTCCTCTGCGGACACGGGAGAAGTCACTGTTTTCATTCTCAGATAATAACTCAATACCAAGTACTCCTTTAGTCAATACTGGCTCACCTGGAAGATTTTCCAATGCAGGGTCCATGGATGATCATAACTCACACTTCGACAGTTTTCCAAAATTTGATTCTTTCAGTGTACGTGACAGTGGGTTATTTTCTTCGCATGATGCTTTTTCCAGGTCTGATTCTATAAGCAGTTTCAAAGATGCTGGGCACAGCAGAGGTTTTACCTCTTTCGATGATACTGATCCATTCGCCAGTGCCGGGCCTTTCAGTTTGGGAGGACAGACACCAAGACGCACATCTGATGGTTGGAGTGCATTCTAACTCTGGTGTTGGCAATTTATTTGTTGCGATTGTTGTGTTGTTTTTGCAGGTAGAGGTACATTCCTAAATCAGGTTATAGTATTCTTACTCTAGATAATAGAGGGTTTGGAAGAAATTAAGCTGTGCTTTTAGAAGAAAGTTCTTTTATTTGTACCTGGATACTGTCTTTTTTTTGAAAGATTATATTTATTGTGTATATTGCAGATGATTTATTGTAAGATCATTTGATTGTCAGAAATATCAGATATTAGGGGGAGATGTATTTTGGCTTGAATGCTTACCGGTCAATTCTGTATATCCAATGTTCCTGTGTATGATGGTACTTTATTGAAGTTATACTTTCCCTGCCACGATGGTCATGCTTTCTTCGCTTGTCAATTGAGATTATGGTCAGGAGTTCTACAAAAGTGAGTGATACCTAAACTGTTCTAAAAAGGGACAAAACAATATACTTTTTCCGTTGTCATGGGTGCCTCGAGGTCTAGCTTTTAAGGATTAAGTAAAGTGTTCAGCTTTAGAAAGGATGCTCCATTTTTTGTCACTTACCTTCTTAATGTAAGTTGGTTTTTTGATGTGTCCTTCTGTATTCACAGATTGGTTGATAATCTAGCAATTAAGTGCATAACACGGTTGTGGTATGACAATTTAAGGAAATTTTGGAAGATAAAAATCTGGACTGGCATGGTTCTCTTCTTTAATGA

Ace file of the UniGene sp_v1.1_unigene1372

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcium ion binding protein, putative	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%

Source	InterPros	Term	Type	Identity
Blast2go	EPS15 homology (EH)	IPR000261	-	-
Blast2go	Calcium-binding EF-hand	IPR002048	-	-
Blast2go	EF-hand-like domain	IPR011992	-	-
Blast2go	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A5AMA5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 634 aas, putative chimeric sequence, your sequence is shorter than subject: 429 - 1120

Fln protein: MARPQNIDLFDAYFRRADLDHDGRISGNEALVFFQGANLPKQILAQIWMHADQNGTGFLGRAQFYNALKLVTVAQSGRELTQDIVRAALFGPAASQIPAPQISPPTAATPSPVLPSAGIRVPTIQPSVGAAQQYVSPGNNQFLRPVSPTTIPTPTPLQGASMGIPGVGTTGQRPQISSGLAEWPGSRIAGPTSIGPISNVSAAQGVQIRGSAPSLLKQQDGLRQTSSAFQGGSIPSVLSKPLQDNIKSSLSAGLSDVKGMSADGNGFSSDSIFGGDVFSATPSQSKQIVASQPLYSVNNVSSSTALVPTPAGPAAALAKQNQLDISQSTSIVPVSIGVGATASSTGGNTQLSWPRMMQSDAQKYTKVFSEVDTDRDGKITGEQARDLFLSWKLPRDVLKQVWDLSDQDGDSMLSLKGVLPCTLSDGTI*

Protein Length: 430

Fln nts: CGTCGTGACCTTGGCTGTCACGCAAAGTTGGAAAAAGGGAAAGGCCAGCACAATAGTTGGGCACGGCACCGCACCAAGATCGTTCTCCAATCTGCCCTGCTACTACATGGAAACAGGTACAGGTCGCTGGATCGATCTTTAGAATCTCTAGATCGATTCCCGTTCTTCGAATTGATTGAACTCTGACGTCTTCGCTGCAGATTTGGTCTATATTTTCACATGAAATGCTGCAGTGATTCGTTGGCAGTTAGGGTTTCAGGGTTGAATTTGGATGCGTTAAGGGATCGGCGGATCGAGGAGGATATCTTCA_-_ATGGCTCGCCCACAAAACATCGATTTGTTCGACGCCTATTTTCGCAGGGCAGATTTGGACCACGATGGCAGGATCAGTGGCAATGAAGCCTTGGTCTTCTTTCAGGGGGCCAATTTACCCAAGCAAATACTTGCACAGATATGGATGCATGCTGATCAAAATGGCACTGGCTTCCTTGGAAGGGCACAGTTTTACAATGCTTTAAAGCTAGTAACTGTAGCACAGAGTGGTCGTGAGTTAACACAAGACATTGTGAGGGCAGCTTTGTTTGGACCAGCAGCATCTCAAATTCCTGCACCCCAAATTTCACCACCTACTGCAGCTACACCATCTCCCGTTCTTCCCTCAGCGGGCATTAGAGTTCCCACGATACAACCGAGTGTGGGAGCTGCTCAGCAGTATGTGTCTCCAGGAAATAATCAGTTTTTACGGCCTGTGTCTCCAACAACTATTCCAACGCCAACCCCTTTGCAGGGAGCTTCCATGGGAATTCCTGGAGTTGGTACAACAGGTCAGCGGCCACAAATTTCTAGTGGTTTGGCAGAGTGGCCAGGTTCACGGATTGCTGGACCAACTTCCATTGGACCTATTAGCAATGTTTCTGCTGCACAGGGTGTTCAAATTAGGGGGAGTGCTCCCTCGCTTCTCAAGCAGCAAGATGGTCTCAGACAAACAAGTTCAGCTTTCCAAGGAGGGTCAATTCCATCAGTACTATCAAAACCTCTGCAAGATAACATAAAATCCAGCTTGTCTGCAGGATTAAGTGATGTTAAAGGCATGTCTGCTGATGGAAATGGTTTTTCTTCAGATTCAATTTTTGGTGGAGATGTGTTTTCTGCTACCCCCTCTCAATCTAAACAAATTGTAGCTTCCCAGCCCCTATATTCAGTCAACAATGTTTCGTCTTCTACGGCTCTTGTACCAACACCGGCTGGACCTGCTGCAGCTCTGGCTAAGCAGAATCAGCTAGATATATCACAGAGCACATCAATTGTGCCTGTATCTATTGGAGTTGGTGCAACAGCGTCAAGCACGGGAGGAAACACCCAACTGTCCTGGCCAAGGATGATGCAGTCTGATGCTCAAAAGTATACCAAGGTTTTCTCTGAGGTGGACACCGACAGGGATGGTAAAATTACTGGTGAACAAGCTCGTGATCTTTTCCTGAGCTGGAAGCTTCCAAGAGACGTTTTAAAGCAGGTCTGGGACTTGTCTGACCAGGATGGGGACAGTATGCTTTCCTTAAAGGGAGTTCTGCCATGCACTCTATCTGATGGAACGATATAG___AGAAGGCCGTCCCCTTCCTCCAGTGCTTCCCACTGGTATTCAAATTGATGAAGCACTGAAGCCTGGAGCTGAAATGCAAACTACTACACAGCGTTCAGCTGCGTTCAGTGGAATGCCTTGGCAGCATAACCCAGTCATGGTTTCTCGGCCTGGTATGCATGGTCCTGTTCCCGGGAATATGCCAGGGCAATTTCAAACACCTCGAAGTGATGGACTGAATACTGAACAGTCAGTTCAGCAGAAGTCCCGAGTGCCAGTTTTGGAAACGAATTTTGTAAATCAGCTAAGCCGGGATGAGCAGAACACTTTGAAGTCAAAACAGAAGGATGCAGAAGAAGCAGAGAAAAAGGTACAAGAGTTAGAGAAGGATATTATGGATTCAAAGGAGAAGATTGAATTCTATCGATCTAAGCTTCAGGAACTTGTTCTGTACAAGAGCAGGTGTGACAATCGAATAAATGAAATTACAGAAAGAGCAGCTGCAGACAAACGTGAGGTTGAATCTCTGTCCAAGAAGTATGAGGAAAAACTCAAGCAGGCAGGTGAATCAAGTGCTCGTATGGCATCGGAGGAAGCTGCATTTAGAGATATTCAGGAACGGAAACTGGAATTATACAATGCAATTGTGAGAATGGAACAAGGAGGGAATGCAGATAGCCTTCTTCAGGTTCGAGCAGATCGCATTCAAACAGATATGGAGGAGCTAAGAAAAGCACTGAATGAACGTTGCAAGCAATTAAGTCTGCGCACAAAGCCAACTGCATTGATTGAGCTACCTTATGGCTGGCAACCTGGTATTCAGCAGAATGCAGCTGAGTGGGATGATGACTGGGATAAATTTGAGGATGAAGGTTTCTCTGCTGTTCAGGATCTGATGAATGAAGGGGCTGCACCCACTCTCTCTGCAAAGACTAGTTCAGCTTTGGCATGGGATGATAGCAGTCCTCTTGAAAGCGGATTTGATTTATCTTCTTCATCAAACTTAGATAGGAAAAGTGAGAATTCTTCCTCTACGGGACATCCACATACAGCAAATGGATCTTCTTATGCACATAGTGAAGATGGGTCTGTTAAAAGTGCACCTGGCAGTCCCCGAAGCCGAAGTATGCCTGGAAGCCCACAACGGGAGATTTCAACAGTTAAAGAAACTCGAAGCAATGATCACCGCACAACATCCTCCAACTCTGGTGATCCATTTGGTGATGGAGGCTCGTGGGAGGCTGCATTTGTTGATGAAAACGACTCATTATGGGGCAATGACAAAAGTGCTGTTGATGCTAATAAGAATTCATCAGATCTAAGTAGCTCAGCACTTACTTTTGATGGGGGTCGTGAAAGGCAGCTAGACAATCCAAAATTTGACTCTGTAGATTCCTTCCAGTTAAAATCCCTGAAAATCACAAGCTTCGATACTGAGGAGGGTGACAATGAGAATTATGACACCTTTGGTCCTCTGCGGACACGGGAGAAGTCACTGTTTTCATTCTCAGATAATAACTCAATACCAAGTACTCCTTTAGTCAATACTGGCTCACCTGGAAGATTTTCCAATGCAGGGTCCATGGATGATCATAACTCACACTTCGACAGTTTTCCAAAATTTGATTCTTTCAGTGTACGTGACAGTGGGTTATTTTCTTCGCATGATGCTTTTTCCAGGTCTGATTCTATAAGCAGTTTCAAAGATGCTGGGCACAGCAGAGGTTTTACCTCTTTCGATGATACTGATCCATTCGCCAGTGCCGGGCCTTTCAGTTTGGGAGGACAGACACCAAGACGCACATCTGATGGTTGGAGTGCATTCTAACTCTGGTGTTGGCAATTTATTTGTTGCGATTGTTGTGTTGTTTTTGCAGGTAGAGGTACATTCCTAAATCAGGTTATAGTATTCTTACTCTAGATAATAGAGGGTTTGGAAGAAATTAAGCTGTGCTTTTAGAAGAAAGTTCTTTTATTTGTACCTGGATACTGTCTTTTTTTTGAAAGATTATATTTATTGTGTATATTGCAGATGATTTATTGTAAGATCATTTGATTGTCAGAAATATCAGATATTAGGGGGAGATGTATTTTGGCTTGAATGCTTACCGGTCAATTCTGTATATCCAATGTTCCTGTGTATGATGGTACTTTATTGAAGTTATACTTTCCCTGCCACGATGGTCATGCTTTCTTCGCTTGTCAATTGAGATTATGGTCAGGAGTTCTACAAAAGTGAGTGATACCTAAACTGTTCTAAAAAGGGACAAAACAATATACTTTTTCCGTTGTCATGGGTGCCTCGAGGTCTAGCTTTTAAGGATTAAGTAAAGTGTTCAGCTTTAGAAAGGATGCTCCATTTTTTGTCACTTACCTTCTTAATGTAAGTTGGTTTTTTGATGTGTCCTTCTGTATTCACAGATTGGTTGATAATCTAGCAATTAAGTGCATAACACGGTTGTGGTATGACAATTTAAGGAAATTTTGGAAGATAAAAATCTGGACTGGCATGGTTCTCTTCTTTAATGA

Fln Alignment:

sp_v1.1_unigene1372___NIDLFDAYFRRADLDHDGRISGNEALVFFQGANLPKQILAQ--------------------IWMHADQNGTGFLGRAQFYNALKLVTVAQSGRELTQDIVRAALFGPAASQIPAPQISPPTAATP---------SPVLPSAGI----------RVPTIQPSVGAAQQYVSPGNNQFLRPVSXXXXXXXXXLQGASM-GIPGVGT-TGQRPQISSGLAEWPGSRIAG-PTSIGPISNVSAAQGVQIRGSAPSLLKQQDGLRQTSSAFQGGSIPSVLSKPLQDNIKSSLSAGLSDVKGMSADGNGFSSDSIFGGDVFSATPSQSKQIVASQPLYSVNN-VSSSTALVPTPAGP-------------------------AAALAKQNQLDISQSTSI---VPVSIGVGATASSTGGNTQLSWPRMMQSDAQKYTKVFSEVDTDRDGKITGEQARDLFLSWKLPRDVLKQVWDLSDQDGDSMLSLK
A5AMA5______________NVDLFDAYFRRADLDRDGRISGSEAVAFFQTTNLPKHVLAQVLMLACYLGDLICGLDTEPSIWTYADHNRIGFLGRAEFYNALKLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLAAAPTPQMNTAAPAPAPVPPMGSVAPTASQNFXVRGPQGPISANVNQQYFPPQGNQLMRPTQTLPGSASLPAQGAAVQGFPGGGTMAGMRLPNSSXSNDLVGGRTGGAPTGIX-------AQ-VPIRGVSPSM--SQDGFGVSPS----GLTASVPSKPQVGSGITSLEPAAKNSKALDVTGNGFASESIFGGDVFSASPSQLKQDSSVHTSSSGNAPISSSIAPVSSGALPSVKSRXLDSPQSLPMIQPVGGQLQQAQPLSKQNQQVPTQNSSAFNSAGISLGTENTASS---QSQIPWPRITQSDVQKYTKVFVAVDTDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLR

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
237	10			90	0.90298
238		10	90		0.90298
291			90	10	0.90298
296		10		90	0.90298
298			90	10	0.90298
299	90			10	0.90298
302	60	10		30	1.0
303			90	10	0.90298
305	90			10	0.90298
306		10		90	0.90298
444		12		87	0.992554
1310	16		83		0.994512
1311		83		16	0.994512
1312		83	16		0.994512
1313			16	83	0.994512
1871	80			20	0.995493
1955	83			16	0.994512
1956	83			16	0.994512
1958	83			16	0.994512
1961		16		83	0.994512
1963		16	83		0.994512
1964	83			16	0.994512
1965		16	83		0.994512
2002		20		80	0.995493
2237	80		20		0.995493
2245	20		80		0.995493
2344	20	80			0.995493
2347		80	20		0.995493
2406	33		66		1.0
2408	83		16		0.994512
2595	72		27		1.0
3489	89	10			1.0
3490			11	88	1.0
3494			11	88	1.0
3497		11		88	1.0
3498		88		11	1.0
3500	88		11		1.0
3502	88	11			1.0
3504	88		11		1.0
3505	88			11	1.0
3506		11		88	1.0
3508			88	11	1.0
3509	87	12			1.0
3510	13		86		1.0
3804	85		14		0.993533
3946			33	66	0.997452
3947			66	33	0.997452
3979			33	66	0.997452
3980			66	33	0.997452
4037		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain