SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1368

Length: 1616 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1368

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SRU0_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	hydrolyzing o-glycosyl	-	-	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 409 - 429

Fln protein: MIHLEFVLIKLMDNEREASWSMVGRNGMQFVLNGSPFYVNGFNAYWLMVLAVDPSARHKISSVLEEAASVGLTVGRIWAFNDGCWRALQISPGVYDEQVFQALDFVISEAKRNKIRLILSLVNNWDAYGGKAQYVTWGRNAGLNLSSNDAFFSDPPLKNHFKSYIKVILNRVNTLTNVAYKNDPTIFAWELINEPRCESDPTGDTLHVWTEEMASYVKLTDPKHLVGIGMEGFYGPSSPDRIESNPYNCAHQEGTDFIRHHQAAGIDFASIHIYPSNWISDGDCHLSFVKNWTWVHIEDCEKTLKMPLLFSEFGIPKRDGGYRESFMEVVYESVLRSARMGGAAGGSLVWQLMSPEDRDHMGDGFEIVLSQDQSTAKIISEQSANLGAINSIIGCRDLDDMHLNSGLM*

Protein Length: 410

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCATTGATAATCTGAGAGCTATTCTGGAAATCTACA_-_ATGATTCacTtgGAGTTTGTTTTGATCAAGCTGATGGACAATGAACGGGAGGCATCATGGAGTATGGTGGGAAGAAATGGCATGCAGTTTGTCTTGAACGGATCACCATTCTATGTGAATGGCTTTAATGCATACTGGCTGATGGTCCTTGCCGTTGATCCTTCAGCCCGACACAAAATTAGCTCAGTCCTTGAAGAGGCTGCTTCGGTAGGACTTACTGTAGGGCGAATTTGGGCTTTCAATGACGGATGTTGGAGGGCTCTGCAAATATCTCCTGGCGTTTATGATGAACAAGTGTTCCAGGCTTTAGATTTCGTCATAAGCGAAGCCAAGCGAAATAAAATTCGACTGATATTGAGTTTGGTCAATAACTGGGACGCGTATGGAGGCAAAGCACAGTATGTAACGTGGGGCCGAAATGCTGGTTTGAATCTCTCCTCCAATGATGCATTCTTCTCCGATCCACCCCTCAAAAATCACTTCAAATCCTATATTAAGGTTATATTGAACAGGGTGAACACGTTGACAAATGTGGCTTACAAGAACGATCCAACTATATTTGCTTGGGAGCTCATCAACGAACCCCGGTGTGAATCCGATCCAACGGGAGACACATTGCATGTGTGGACGGAAGAAATGGCTTCATATGTGAAATTGACTGATCCCAAGCATCTAGTGGGCATAGGTATGGAAGGGTTTTATGGGCCTTCTAGCCCTGATAGAATAGAGTCCAATCCCTATAATTGTGCGCATCAGGAAGGAACCGATTTCATCCGCCACCACCAAGCTGCTGGCATCGACTTCGCTTCTATACACATCTATCCGAGTAACTGGATTTCCGATGGAGACTGTCATCTCTCGTTTGTGAAAAACTGGACGTGGGTTCACATCGAAGACTGTGAGAAGACACTGAAAATGCCTCTGTTATTCTCTGAATTTGGAATCCCTAAAAGAGATGGAGGATACAGGGAGAGTTTCATGGAGGTTGTGTATGAGAGTGTGCTAAGGTCTGCAAGAATGGGTGGAGCAGCAGGAGGGAGCCTGGTATGGCAGCTAATGTCTCCAGAGGACAGAGATCATATGGGAGATGGGTTTGAGATCGTGCTGTCCCAGGACCAGTCAACTGCAAAAATTATTTCGGAGCAGTCAGCCAATTTGGGTGCCATCAATAGCATCATAGGATGCCGAGATTTAGATGATATGCATCTCAACTCAGGACTTATGTGATGTCTTAATTATCAGTGCAAATGGGAATAAACATTGCTGTTCAGAGCACTCTAGGTTAGATTATTTATTTATTTATTGTTTTAACAGTTCGTGCCATACTATTTTGCTTTGCAGATCTATTTTATACATTGTATAAGATATAGCAGGGTTCAAGATGCTGTGACTGCTGCCATTGCTGTGGTAGCCACAGGGAGAGTTCAGTCATTCCAGTCACTTTCTTGGGTCAGTGCTCTATTTCTATGTATATATAAAGAGAGATTAACATTCATTTGTAAATTATTTCATTCCAGTGAATTTAAATATCATATGGCATTTAGATTTCGTTTAAA

Fln Alignment:

sp_v1.1_unigene1368___SMVGRNGMQFVLNGSPFYVNGFNAYWLMVLAVDPSARHKISSVLEEAASVGLTVGRIWAFNDGCWRALQISPGVYDEQVFQALDFVISEAKRNKIRLILSLVNNWDAYGGKAQYVTWGRNAGLNL-SSNDAFFSDPPLKNHFKSYIKVILNRVNTLTNVAYKNDPTIFAWELINEPRCESDPTGDTLHVWTEEMASYVKLTDPKHLVGIGMEGFYGPSSPDRIESNPYNCAHQEGTDFIRHHQAAGIDFASIHIYPSNWISDGDC--HLSFVKNWTWVHIEDCEKTLKMPLLFSEFGIPKRDGGY----RESFMEVVYESVLRSARMXXXXXXSLVWQLMSPEDRDHMGDGFEIVLSQDQSTAKIISEQSANL
D5A9Z9______________SFVERNGSHFVVDDKELYVNGWNSYWLMDQSVGDSTRHRVKTMLRRGAEMGLTVVRTWAFNDGGYNALQQFPGTFDERVLRALDFVIVEARRNGLRLIFSLVNNLNAYGGKVQYVEWAHAAGINVGSSNDSFFSDPTIRGYYKEYVKSILVRKNSISGVEYRNEPAIFAWELVNEPRCTSDASGQTLQTWISEMAKFIKSLDSRHLLTVGLEGFYGKTTPNKIELNPGDWAVSLGSDFIWNSQVEEIDFASVHAYPDSWIPNVDLEDHLNYFSKWVTSHIDDGEQILKKPVLFTEFGLSSHHKGFEQSHRDRLFKTMYEEIDESARKGGAGGGALIWQFV-VEGMEEYGDEFAFVPWQFPSTHKLIVEQSCRL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1159			14	85	0.993533
1468		25		75	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1348	1364	TTAT TTAT TTAT TTAT T	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain