SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1366

Length: 1517 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1366

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	cc-nbs-lrr protein	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NB-ARC	IPR002182	-	0.0	70%
Blast2go	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: Distance to subject end: 577 aas, your sequence is shorter than subject: 260 - 835

Fln protein: MLSFPLASEGNRILHAMDGFSCKKSCSRLDVLLAGLIQTVQPLCIANLKAPKNEQDPKYEQFLGILLDGVELVKNCEKTSPYNIYQNLRYASKIHQLEKEIRDFVQYQMPLQLCLDVKNLVAELTSLRHLYESLSVDERRVNEAIVPKLTNDPLENATMLQQMGPDMFDGAFDKTPCEYNGYVKTDFVVGLEKNIRNLKKMLLQTESSVIGVQGMGGIGKTTIALSLCNDRDIKGAFQNNVIFITVSQSPNLKGILDTMW

Protein Length: 261

Fln nts: AGCAGTGGGTATCAACGCAGAGTACATGGGGGAGGCGCTAGACGGTGTACCGTCCGATGAACTTGAGGAGAGAGAGATCCAACGGCTCACCCTGAAGGGCACCAGGATCGACGGGAAGTCCTATGCATTCATGGAAGGGTCCCGGAATTTATCTTGGAATTTTGCTATAAGTACTAAGGAGCGCCAGCTTCATAGGGGTTCGGCCGGTAAGTCACTCTTGCAATAATTTTTTGAAGAGAGACTAGGAGTAAAAGCTTCAAAACGTTCGGCGGGTAAGTCACTCTTGCACTAATTTTTTGAAGAGAGACTAGGAGTAAAAGCTTCAAAACGTTCGGCCGGTAAGTCACTCTTGCACTAATTTTTTGAAGAGAGACTAGGAGTAAATTTTTCTGGTGAGTTTGCCTACAATGTTCTTCCCACGGGTTCCTCATACGTTGGGTGGTTCTTTTTGGAGCAACTCAAGCTCTAGAATAGTCGCGTTACTTGCAGGCCTTACTCAAAAAGCTGAGCTGCCCTGTGTAAGGAATCTAAAAACACCGAAAAATGAGCAAAATCTCAGGTATGAGCAATTTCTGAGCATCCTACCAAGGTGAACGAAGCCAGTGTTGCAAGGTGAACAAATCTTCCATCGAAAACACAGGTATTGCAGACACAAGTATTGCAGTCTAGAACGACCAGAGCTATTCAAAGGAGAAAAAAGAAGCAGCACATTTTATTTTGGCAACATTACCTATA_-_ATGTTGTCTTTCCCACTAGCCAGTGAAGGAAACCGCATCCTTCATGCGATGGATGGGTTTTCTTGCAAGAAGTCATGCAGTAGATTAGATGTGCTCCTTGCAGGCCTTATTCAAACAGTTCAGCCTCTCTGTATAGCGAATCTAAAAGCACCCAAGAATGAGCAGGATCCTAAATATGAGCAATTTCTGGGCATCCTCTTGGATGGCGTTGAATTGGTGAAGAACTGTGAGAAAACCAGCCCTTATAATATTTATCAGAATCTCAGATACGCTTCTAAAATTCACCAATTGGAGAAGGAGATCCGTGACTTTGTTCAATACCAGATGCCTCTCCAATTATGCCTTGATGTTAAGAATCTCGTAGCGGAGTTGACAAGTCTTCGCCATCTGTATGAGTCGCTGTCGGTGGATGAGAGAAGGGTGAACGAAGCTATCGTGCCCAAGCTCACCAATGATCCCCTTGAGAATGCCACGATGCTTCAACAAATGGGTCCAGATATGTTTGATGGAGCTTTTGATAAAACTCCTTGTGAATATAATGGTTATGTAAAAACTGATTTTGTAGTGGGTTTGGAGAAAAATATTCGGAATTTAAAGAAGATGCTGCTCCAGACAGAGTCGTCTGTTATTGGAGTGCAAGGTATGGGGGGCATTGGCAAAACAACTATAGCGTTGTCCCTCTGCAACGATCGTGACATTAAAGGTGCTTTCCAGAACAATGTCATTTTTATCACGGTATCACAGTCCCCAAACTTGAAGGGAATTTTAGATACTATGTGGGG

Fln Alignment:

sp_v1.1_unigene1366___MLSFPLASEGNRILHAMDGFSCKKSCSRLDVLLAGLIQTVQPLCIANLKAPKNEQDPKYEQFLGILLDGVELVKNCEKTSPYNIYQNLRYASKIHQLEKEIRDFVQYQMPLQLCLDVKNLVAELTSLRHLYESLSVDERRVNEAIVPKLTNDPLENATMLQQMG-PDMFDGAFDKTPCEYNGYVKTDFVVGLEKNIRNLKKMLLQTESSVIGVQGMGGIGKTTIALSLCNDRDIKGAFQNNVIFITVSQSPNLKGILDTMW
B8LKC3______________MFSFPLLSGGDHILYGIDILNCKKSYSRFDGLVEGLLPKVQELYLSEQRKPKKEKNPIYEQFLNILNDGVALVKKCKNTSRYNVFQNLRYASQIHQLEKEITDFVRYQMPVNLSLDVKNFIEELKNLRQLCEKGSVDERKVNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPPS----PKSDFVVGLEKNISNVKRILLDRDVSVVGVDGMGGVGKTTMAMALSDDQEIKGVFRNNIVFITVSQSPNLKVILETMW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1191		80		20	0.995493
1334		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain