SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1359

Length: 1931 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1359

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Makorin-1, putative n=1 Tax=Ricinus communis RepID=B9SL96_RICCO	-	-	66%
FL-Next	sp=E3 ubiquitin-protein ligase makorin; Oryza sativa subsp. japonica (Rice).	-	-	64%
Blast2go	ccch-type zinc finger protein c3h69	-	-	71%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	71%
Blast2go	Zinc finger, RING-type	IPR001841	-	71%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	71%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	71%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5ZA07

Fln msg:

Fln protein: MSNRVLCKYFMHGACLKGEACEFSHDWKDQENNVCTFYQRGVCSYGSRCRYDHVKVSHPESTFSLSPISHLGSKVEPKSVSVHSGVTVGNDTSIAWHTGELSGLSKPFFPPLGQAWTAGSQDVSSTSRMELQTKSSIRDAADLPICAFAAAGKCPRGDTCPQLHGDLCATCGKHCLHPYRPAEREEHIKQCQRNQKRLEALRNSQEIECSVCLDRVLSKPTAAERKFGLMSECDHPFCISCIRNWRGNNPVPGMDVNSVLRACPICRKLSHFVIPSVIWYSNQEEKQEIIDNYKKKLSSIDCKYFDFGKGTCPFGTSCFYKHAYKDGRREEVKLRHLGAADGSTVIAKNVRLSDFLGRLGL*

Protein Length: 363

Fln nts: CGTTTACGCCACGGGGGATTTACAACCAAATATTCTGCGTTTGGATGACTTAAAACTGAGCGTCGTGACCTTGGCTGTCACTCAGGTTTCTTAAATCCTCGTCCCAAATTTGTGCGCTCGTTTATTCTTTCTATCAGCCAGCGCAAACAAAGGAAACC_-_ATGTCGAACAGGGTTCTATGTAAATACTTTATGCACGGAGCATGCTTGAAGGGCGAGGCTTGTGAATTCTCACATGACTGGAAGGATCAGGAAAACAATGTGTGTACATTCTACCAGCGAGGAGTTTGCTCTTATGGAAGTCGGTGTAGATATGATCATGTGAAGGTGTCTCATCCTGAAAGTACATTTTCTTTGTCGCCGATATCTCACTTGGGCTCTAAAGTGGAACCTAAATCAGTTTCTGTACATAGTGGAGTGACAGTGGGCAATGACACCTCAATAGCATGGCATACAGGAGAGCTTTCAGGCTTGAGTAAGCCCTTTTTTCCTCCTCTTGGACAGGCCTGGACTGCTGGCTCTCAGGATGTCTCCTCAACTTCAAGGATGGAATTGCAAACAAAGTCTTCAATCCGTGATGCTGCTGATTTGCCAATTTGCGCATTTGCTGCTGCTGGTAAATGTCCTCGTGGTGACACATGCCCTCAGCTTCATGGAGATCTATGTGCTACTTGTGGTAAGCACTGTTTACATCCATACAGGCCAGCAGAAAGGGAGGAGCATATCAAGCAATGTCAGCGTAATCAGAAACGCTTGGAAGCTTTGAGGAACAGCCAAGAGATTGAGTGCAGTGTATGTTTAGACCGTGTACTATCAAAACCAACTGCTGCTGAACGGAAGTTTGGTTTAATGTCAGAGTGTGATCATCCTTTCTGTATTTCGTGCATCCGCAACTGGCGAGGAAATAATCCAGTCCCTGGCATGGATGTGAACTCTGTATTGCGAGCTTGTCCTATCTGTCGAAAGCTCTCTCATTTTGTTATCCCAAGTGTGATCTGGTATTCAAATCAAGAGGAGAAACAGGAGATCATTGATAACTACAAAAAGAAACTCAGTTCCATTGACTGCAAATACTTTGACTTTGGAAAAGGCACTTGTCCTTTTGGCACTAGCTGCTTTTACAAGCATGCATACAAGGATGGCAGAAGAGAAGAAGTGAAGCTCCGGCATCTTGGTGCTGCAGATGGAAGTACAGTGATTGCAAAAAATGTTAGGCTGTCTGATTTTCTGGGAAGATTAGGCTTGTGA___AGATCTGGTCAACCATGAAATGTTTTGGCAGAATTTTCTGTTATCAGCTTGATTGGCAGCGTTTCTAAAGAGAACAATAGGGAAATACTTGAGAGGTGGCTTGCTAAGATGGAATGTACCAGCTTTTTTAATTTGGGCAGATTTTGACCGTGTTCAGTTTTTGATTTCTGCATAATATGCAAGAGTAAGTTCTTTAGACAGAATGCATACTTGAACTCGGTAAAAGAGCCACAGAGGCGCATATTGAATTTTACGTTCTTTTTTATTTTTCATCATGTAGGTTTCTATTGTGGCTCCTGATATTGTGTCCGATTGGTCTGGCATGATATTAGGATATTTTGCAACACCTAATATTTGTAGTTAGGAGCACTGCTAAAGATGTTGGAATAAAAAATAACATTTTCAAAGTACTCTATTTACGACTGTCGTGAGAATGGTTGTCTCTGCTCCCTTTATTACCGATACCTATGGTCTGGTTTTATTGTTTTAATCAGCGCATTTTTGGTTTCGGCCCAGACGATCACTTGATAATTGAAGCTGGCTTTGTGAAATTTCATATCATTATGTTGTGATTGGGTGGAGTAGAAATTGCTTATGTGATTTAGTCTGTGGGATCCTTCTACTTGTACTCAGTCCTGATGTACTTATATCTGTAATGTAATTGTCCTAAGATGTACTGAGTTGAAT

Fln Alignment:

sp_v1.1_unigene1359___SNRVLCKYFMHGACLKGEACEFSHDWKDQENNVCTFYQRGVCSYGSRCRYDHVKVSHPESTF---SLSPISHLGSKVEPKSVSVHSGVTVGNDTS---------IAWHTGELSGLSKPFFPPLGQAWTAGSQDVSSTSRMELQTKSSIRDAADLPICAFAAAGKCPRGDTCPQLHGDLCATCGKHCLHPYRPAEREEHIKQCQRNQKRLEALRNSQEIECSVCLDRVLSKPTAAERKFGLMSECDHPFCISCIRNWRGNNPVPGMDVNSVLRACPICRKLSHFVIPSVIWYSNQEEKQEIIDNYKKKLSSIDCKYFDFGKGTCPFGTSCFYKHAYKDGRREEVKLRHLGAADGSTVIAKNVRLSDFLGRLGL
Q5ZA07______________TKRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGSRCRYDHVKVSRNPTVAPPPSSSTTTRASSSLQPLSFGRPHHVGYQADSSNPRQQISMDVLAHSG-----SKPVWRNDFQHESVLEDGIDWSISPTVQNQTTL-SPADLPICSFAAGGNCPYGEECPQMHGDLCTTCGKMCLHPYRPDEREEHTKLCEKNHKRLESLKRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRNNSPTSGMDVNSALRACPICRKLSYYVIPSVLWYFSKEEKLEIIDNYKAKLKSIDCKYFDFGTGTCPFGSSCFYKHAYRDGRLEEVILRHLDADDGSTVIAKNIRLSDFLSRLHL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
986		75		25	0.996473
1206	75	8			0.99999
1262	13		86		1.0
1578	66	33			0.997452
1579			33	66	0.997452
1581	66	33			0.997452
1587	66	33			0.997452
1588		33		66	0.997452
1591			33	66	0.997452
1595	66		33		0.997452
1596	66			33	0.997452
1602	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain