SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1346

Length: 1589 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1346

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	myb family transcription factor	-	-	41%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	44%
Blast2go	myb family transcription factor	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	56%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	56%

Source	InterPros	Term	Type	Identity
Blast2go	SANT/Myb domain	IPR001005	-	56%
Blast2go	Homeodomain-like	IPR009057	-	56%
Blast2go	Homeodomain-related	IPR012287	-	56%
Blast2go	Myb, DNA-binding	IPR014778	-	56%
Blast2go	Myb-like domain	IPR017877	-	56%
Blast2go	SANT domain	IPR017884	-	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9MTX9

Fln msg:

Fln protein: MDYYDEDPRPRFQLQASSIPAPQQSASIDRKHAAFCIATGILIFSYGCLLPGIWQILLTWIGLSLAIGPFAPISLTGGDIRVGCGEIIEEPQIETPKPEPERKNYRGKAKRSENSNPEIPILNIPRSDEIPEGNKNGEAGAKVSVVSRVSDDGEWTAEDVELLKKQLAKNPPGKPGRYEAIAEAFGGARSVDSIVKKAKSLGERKLGDDDSFAKFLAQRKISDKIEMNLAEGKDLADDEEDKGKKFGWSSAEDIALLNALKVFPKDTNMRWEKVAAAVPGKSKTQCMKRFSELKLNFRNSKASDT*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATCTCCCATATGAACTAGACTTCGCGTACTTATAATAACCTGTCACTTCTTCAAATTCAAAGATGGTCTGCCGTCGGAGGTCAGCGCCAACCCCCTTAAAGGCTGAGCCTTCTCGACTCAGCACCATCTTGGATTCCGATTCAGATACTTAACACCTATGAACGAACAAGTAGTTCTGAAAAAATCTATTGAATTTAAAACTATCACTCAGTGAGGTCGCTGATCTGCCAAAGCGAACCCACGCAGTTCTGAAAAAATCTGTTGAATTTAAAACTATCGCTCATTAAGGTCTCTGATCTGCCAAAGCGACCCCTTGCTTATTTAAAACCAGTGCATTTGCTCGGATCAATCAGTGATATATTAACATGCTCGTGTGATATTTCAGTTTAGAC_-_ATGGATTACTACGACGAAGACCCAAGGCCCCGTTTTCAGTTGCAGGCATCTTCCATACCCGCTCCCCAACAATCTGCTTCAATCGACAGAAAACACGCAGCATTTTGCATAGCAACAGGAATCTTAATCTTCAGTTATGGCTGCCTTTTGCCCGGCATTTGGCAGATCTTACTGACATGGATCGGCTTGTCACTCGCCATTGGACCGTTCGCCCCGATTTCCCTCACCGGTGGCGACATCAGAGTCGGCTGCGGCGAAATCATTGAAGAACCGCAGATCGAAACCCCAAAGCCAGAACCCGAACGGAAAAATTATAGAGGAAAGGCCAAGCGCTCAGAGAACAGTAATCCCGAAATACCCATTTTAAATATCCCCAGATCAGACGAAATTCCGGAAGGAAACAAAAATGGAGAAGCAGGTGCTAAGGTTTCTGTGGTTTCTAGGGTTTCTGATGACGGAGAATGGACGGCGGAGGATGTTGAATTGCTGAAGAAACAGCTGGCGAAAAACCCTCCTGGTAAGCCCGGGCGCTACGAGGCCATTGCCGAAGCTTTTGGAGGGGCACGCAGCGTGGATTCCATTGTTAAGAAGGCCAAATCGCTCGGGGAAAGGAAGCTAGGGGACGATGATTCGTTTGCTAAGTTTCTGGCGCAGAGGAAAATTTCAGACAAAATCGAGATGAATTTGGCGGAGGGCAAAGATTTAGCGGATGATGAGGAGGACAAAGGGAAGAAGTTCGGGTGGAGCTCTGCAGAAGATATAGCACTTCTGAATGCTCTGAAGGTCTTCCCCAAAGACACCAACATGAGGTGGGAGAAGGTTGCTGCTGCTGTTCCAGGTAAATCTAAAACACAATGCATGAAAAGATTTTCTGAATTGAAGCTGAATTTTCGCAATTCAAAGGCATCAGATACATAA___AGGTACGGGCATTCACAATATGGAGGAGAAGAGGAAGATTTTCGAATTCTAGAGATTCATTTGCAAAGAGAGGGAGAGGAAGAGGGTTTCTTGTTCTTTGAAGGGTGTTGAAATGTATGCGCGCTGTAACGGAAAATGCAAAAGGAATGGCCAGTGTGCACCTCCAAGCCCCGCAGCCATAGTGAGAGTATGGACGTCTGATAAGCATTGAGTTACTTGGGCAGCCCAAAATTGAGAAAAATAAAGCGCACAA

Fln Alignment:

sp_v1.1_unigene1346___MDYYDEDPRPRFQLXXXXXXXXXXXXXXDRK-------HAAFCIATGILIFSYGCLLPGIWQILLTWIGLSLAIGPFAPISLTGGDIRVGCGEIIEEPQIETPK--PEPERKNYRGKAKRSENSNPEIPILNIPRSDEIPEGNKNGE---AGAKVSVVSRVSDDGEWTAEDVELLKKQLAKNPPGKPGRYEAIAEAFGGARSVDSIVKKAKSLGERKLGDDDSFAKFLAQRKISDKIEMNLAEGKDLADDEEDKGKKFGWSSAEDIALLNALKVFPKDTNMRWEKVAAAVPGKSKTQCMKRFSELKLNFRNSKA
B9MTX9______________MEFLDEDARPRFLFQSRPIPSSLTNTQTQQKPLNKWFLFLSISLSSLLLLLSFLYLQTEPIRSLLFWVSISLLVGPFAPSHLTGGDIRVGQGPILE-PLEQEPEFVEEKQARKKRSKPIRSEEIVKN-PIQNVEITNGLSTKGKKAETLASGEKGLV--RNEGEKEWNEEDSEILKKQMVKNPVGKPRRWEVIAEAFNGRYRVESVIKKAKELGEKKMDDSDSYARFLKNRKPLDTRAESGSQGLESDESGQEVGGGLGWTTGEDIALLNALKVFSKDVAMRWEKIAAAVPGKSKAACMKRVTELKKDFRSSKA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1185	83		16		0.994512
1255	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain