SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1327

Length: 1866 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1327

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative; K13095 splicing factor 1	-	-	8.0e-22	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	splicing factor-related	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	62%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: your sequence is shorter than subject: 389 - 970

Fln protein: RRDLGCHSVSLEKSGPGIPGQSTQPLGLRDNYLSWLAGGLEHAENGSAGIAPDISKGHEFGTSSVQGSRLHGYSPNFSHVGLESSFDSPSVSHLGLGPRFEHNHGKEIDRSNVYVGYLPPTMEEEQLIKLFSPFGRIAEAKVIRDNVKGSSKGYGFVKFFNIHCAAQAIAHMNGYRLEDKTLAVRVAGWPPGSEMGPAEDLYTSDKKQPPKLPVHSGDYAQISWNSSTRPVSLSPYNLYSNNNGSGMPYHSVNPLQGGTFNSLPATSYRTHDLYEMPLRLAESSSGMHGLPRSQPVLGNVSDSSMSKLNVHSADAMSHFSPNKSRISTYQHNAPPSVPSGSAYSELSSQASLMRGLGTTPQPSNLFPSGYVKKAMELEYERFLSETGP*

Protein Length: 390

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCTTTGGAAAAGAGTGGGCCTGGGATTCCAGGACAGTCCACTCAACCACTGGGTCTTAGAGACAATTATCTGTCATGGTTAGCTGGAGGTTTGGAACACGCAGAAAATGGAAGTGCTGGAATAGCACCAGATATAAGCAAGGGTCATGAATTTGGGACCTCTTCTGTACAAGGTTCTCGTTTGCATGGATACAGCCCCAACTTTTCACATGTGGGTTTGGAATCTAGTTTTGACAGTCCTTCCGTTTCCCATCTGGGTTTAGGACCTCGTTTTGAACATAATCATGGTAAAGAAATTGATCGCTCAAATGTATATGTGGGATATCTGCCTCCTACCATGGAAGAAGAACAATTGATTAAGCTATTCTCTCCTTTTGGTAGAATAGCTGAAGCCAAAGTCATTAGGGACAATGTGAAAGGTTCGAGCAAAGGTTATGGTTTTGTGAAATTTTTTAACATCCATTGTGCTGCCCAAGCTATTGCACATATGAATGGCTACAGGTTGGAAGACAAGACTTTAGCTGTAAGGGTGGCAGGATGGCCTCCTGGCTCTGAGATGGGACCTGCAGAAGATCTTTACACTTCTGATAAGAAACAACCACCAAAATTGCCTGTCCACTCTGGTGATTATGCACAGATATCATGGAATTCTTCAACTAGGCCTGTATCTTTATCTCCTTATAATCTTTATTCTAATAACAATGGTTCTGGTATGCCATACCATAGTGTCAATCCTTTGCAAGGAGGTACTTTCAACAGTCTGCCAGCTACTTCATATCGTACACATGATCTATATGAGATGCCACTCCGTTTGGCAGAATCATCTAGTGGCATGCATGGGCTTCCTAGATCTCAACCAGTACTAGGCAATGTCAGTGATTCTTCGATGTCAAAATTAAATGTCCATTCAGCGGATGCCATGAGCCATTTTTCTCCAAACAAATCCAGGATTTCTACATATCAGCACAATGCACCTCCATCAGTTCCATCGGGCAGCGCATATTCTGAGTTATCATCACAAGCTTCATTAATGAGAGGTTTGGGTACCACTCCACAACCTTCTAACCTTTTTCCTTCTGGGTATGTGAAGAAAGCTATGGAATTGGAATACGAAAGATTTTTATCTGAAACGGGGCCATGA___CATGAGAACATTTCAGGGATCTATAATATTTCATTCTAAGACTAAAAGTTGAGCATCTATATCGAACAGAAGTAATTTATCTCTGATTGACTTTTTACAAGGTAAATTACCTTCATTGTCTACTTGTGAATTTTTGTGAGCAGAATATTGATAAGGAAGCTGTGATTTAGTTCAACCAGGATACACACTTTGTACTATTGGAAATTTAGCAACATCTCTGAGGTGCTAGAGAAAATGACATCTAAGGTTGTTGATGAAGGCCACCTACTTGGCAGTGTTTTGAAAGATTCCTCCAGTTACATTCAATACATCTTGAAACTGCACTACTTACCAACAAAGTTGTTCCAATGTTTCTGCAGCTATAATAATTTTACAAAGTTGCTTTGGATAACATTGAATTTGTGTTTCTGGAATTACAACATTAAGTGTCTTGGCACTTAGCTGTCCATTGCCATTTCATTCCCTTTTTATTCTTTCTCTTCTTGAAGGTGAATATCCATGCTACTTATGAATAATAGGTTGATCCTGTTTTGTAACCTGAGATAATTGGGCATTTTCTTGAAATGCATAATGGTTACAATGTGAATCTCATCACCTTTTTGAGAGTACAAACATGTCTCCTGTGTGATGTGTCCCATATCTGAGGTTGATGAGTCACTGATAAATTAGTGTACATTATTAGTCACACAAATGCTGTGA

Fln Alignment:

sp_v1.1_unigene1327___DLGCHSVSLEKSGPGIPGQSTQPLGLRDNYLSWL--AGGLEHAENGSAGIAPDI------SKGHEFGTSSVQGSRLHGYSPNFSHVGLESSFDSPSVSHLGLGP
B8LRH8______________ETGKSAVSMEKSGSGIPRQSIQPLGPTDNYMPWLAQAGGLEHPQNGNAGIGSEVMRVLMENRGSEI---PIQSSQPLGFTDKYM-TGLAGGLEQLENGNTGIVP

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
372	50		50		1.0
397		83		16	0.994512
413		50		50	1.0
426		50		50	1.0
436	50		50		1.0
450	50		50		1.0
469			60	40	1.0
471	40		60		1.0
478	20			80	0.995493
479	20			80	0.995493
489	25			75	1.0
558	14		85		0.993533
560		88		11	0.923564
561	88			11	0.923564
565			11	88	0.923564
581	88		11		0.923564
849			80	20	0.995493
855		20		80	0.995493
857	20			80	0.995493
1356	88		11		0.999937
1509	85			14	0.999981
1781	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain