SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1326

Length: 3798 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1326
CGTCGTGACCTTGGCTGTCACTCAAATATACTAAAACGAAAAATAATAAAAACGGCAGATAAATGCACTGTAGGAGCCCTCACTTGACCCATGGTTAAACCCTCTGCGTCTGCGAGCCTTTAGCTCGGAGGTTTAACCGAACCAGGGTTAAAGCACCGTCCACTGATACTTGAACAGGGGGCCGTGTTCTGCGAGGGGTCAGGTGAACTTTCAATGAAGAGAGAAGAAGAGTACTGGTTCAGTTTCTGGTAGCTGCACTCGAACCCTAGACCTGTGACGCGGCCTGAAACCCTAGGGTTTTGGGGGAAAATGGCGGGCATCGACAAAAAGGAACTCACGCAATAAGCTATTTGAAGCCGGCAAGCGGCGGGAACACCGCTGCCACTCAGTCTAAGGATGATCTCGTTCAGGCTTTGGAGAAAGTGGAGGACTATTTATCTATGGTGGAACAGTCACCTTCTGAGATAATGCAGGATGCAGTGCTTCCATCCATGAGTGCATTGGTAAAGCCAGAGCTTCTAAGGCACCAAGACAAAGATGTCAGGCTCATTGTTGTTACTTGCATTAGTGAAATCACTAGAATAACGGCACCCGAAGCACCATATAATGATGATTTAATGAGGGAAATATTTCAGTTGATTGTTGGAAGCTTTCAGGGACTAGATCAAATGAACAGTCCCACATTTGGAAGGAGGGTAACAATTTTAGAAACTGTTGCAAAAGTCAGGTCATGTGTTGTCATGCTGGACCTTGAGTGTGATGATCTCATCCTTGAAATGTTTCAACATTTCCTTGCCAGTGCTAGTGAGAATCACACTGAAAACGTATCTGCTTCAATGCAAACAATTATGACTTTGGTTTTGGATGAGAGTGAAGACATATCACAACAACTGTTATCTGTTTTACTGACTAGCTTGAGAAGAGACAAGCAGGAGGCTTCACCAGCTGCCCTTGCACTAGCTGTAAATGTTGTTAAACGCTGTGCAGAAAAGTTGAGGCCATATCTGACAGCAGAAATGTCAGCGGAAGGAGCTTCTCAGAGTGATTTCCAGAAGGAATACCATGAGATTATTTATGATATTTGTCAACAACCACTTCATTTGCCTCTGCCAAATGTTTCAAGTACAGTTCAGGAGCTTCAGCCAGATGGAAGCTCCGCCCCAGGATCTGTTGTTGGCAATGATGTACAACCAAATGCGCAAGGTGCAAGCTTGTCCTCAGGTGGCAAGGTATCTCCTGATGTTAAGGGGTTGATTAGGAATGAAGATAATTGTGTGCCTGAAGTTGATAAGGGTGACCACAAAGATTTGCAAAAGATCAGTGATGGCAATGCTAAAGAAGCTGGTAAGGAGAATATTTCTCATGATCTAATGCCTCCAGGAATAGTTAAGGCCAGTAAAGGTCGCAGAAGCAGTCAGGCCAGAAGGTCAACAACTACACCAAAAGTTGAGCTGGATAAATCATTGGATTCTAAAATATTGGAATCTGGCAAGCCCACTGGTAATGTCAGGGAAGGGAGGAAGAGTAGAAGGTCAGAAACAATGCCAGATACAAATAAAGCTTCCAATGAAAGTGTTGTTGGAAATGATGTTCAATCCTTGTCCTCGTCCAAAAGAAAAAGAGGCAAATCAGGTAAGGAAAGCAAAAATTCGGCCCCTTTAGATCAACCAAAGAAGGAAACGGTGGGTATGTTATCCCCAGGTGGATCAGATGTTGAAACATTAGACTTGGCTGCCTCAGCCCAAAGCAAAGAGGTGAAGGTAGCCTCTCCCACACAATCAAGTAAGGACACCATAAATCCGACCTCCCCGGACCGCTCAAGTAAGGAGGCTGGAGGTTTGGCCTCTCCAGCACTAGTAGTTGAGGATTTGGAAGGCCCAGTAGCTGCAGCACAATCAAGTAAGATGGAGGAAGGGTTGTCATCCCCAACAAAATCGACTAAGGACAATGAGGATTTGGTTTCATTAGTACCAAAAACTAAGGATGGAGTAGGTTCACCCTCTCCAGAAAAGTCAAGTAAAGAGAAAGTAGGTTTGGCCTCCCCTACTCTCAAGGATGATGGCACAGTGACAGACTCCTCTCGATCAAAACGAGGGCGTACAAAATTTCCTGGAAAGACATCAGACACTAAGGAAGAATCTGTGTTGCCAGGTTCAACAGCTGTAGTGTCAGAAGATGTTTCAGATCTAGCTGGGGCAGAAGAAATTCCTGCTAAATCACCTAGCACCAATCCGCAGTTGGCTGCAAGTACAGATTCAGAAGCAAAAGTATTGAAACGTCCAAAGAGAAAGTTAGACACCAGCAATGTTAGCACACCAAAGCCTGTAGATAAAAACTTACATCCAATTCAAAAGGAGTCACGGCAGACAGATACTCCAGATGAAAACCAAGATGATGTTCAACGTCCTAAAAAGATGCAGAAGGTCACTTCCATTCAAGAGTCTGCTGAAAAGGATGTAGTTCAGGCTGGTGAGAGTTCCAAGAGAACTCCAAGAAGTTCTACAAAGAGGAAGAGTGTTTCAGTGTTGGAGAAGACTCCTGGTACAGCAGATGGAAGTGAGGAAGCTGAGAAATTGGTTGGACGCAAGATCAAGGTTTGGTGGCCACAGGATAAACAGTTCTATAATGGTACTATTGAGTCCTTTGATACCAAACTGAAGAAGCACAAGGTGGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTTTGAGTTTATTGATGAAAACCCTGCGACTGAAAAGTCACCGCCAGTAATTGCAAGCTCAAAACCAGTTGTAGACAAGTCGGCAAAGAGGAGGACCACTAAAGGGGAAAGCCCACCCGTAAAAGAGGATGTGACAGAATCTTCAACAAAAAGGGGATCACATTCTTCCAAAAGCAGGAAGGAATCTAGGTCTCAGTCAGATGTGAAGCCTGATAACAATGGGGCATTGGTAAAAAGTGTAGAGGGTGGTTTATCTGAAAAGGATGCTTCAGAAACCATTGCAGACTCTGTTATGGCTCCAGAAAATATCGATCAACCAACAAGTGGCAGTAGGGCTAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAAGGTAGACAAGTGACATCTTCGAGTACTCCAACAGATGGAACTGTGAAAAGGTCCAAAGGAACTAGAGGAGGAAAAAGTGGAACAGACCAGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAATTCAGATGATGAACCTCTGAATACATGGAGGTCACGCTCACGATCTGAACAGTAAGATTTGGGGATAGAGCTTTGTCTTATATTGGTAGGAGGATTGGGCTCATGTTATCAAATCTTATTTGGCTGGCAACCATTTCTGTTTGACACAGTTTCATTAGGTGTCCTGTTGTCCTGATTCACCTCATTATAAATTCCAATCATTTTCTAGTTAAGTTCATGATCCTTGTATTATGAATGCCACGATGGCCATGATCTGTGTATGCCTTTTTTCTTTTGCACAGGCTCTTGCACTTGTTCTACAGGCGTGTTCTTATAAATACAATTTGCAGTATTCTTATTTTTTATGAGATGTATTCAACGTCACTTTCTTTTCTCTAATTGATCATGATCATATAATTTACTTCCTCCATAGCTAGATTGTCTCAGCACATAGATACATTTGGAAGCGATAGCTCTTTGATCTAATAATAGCTACGTTCTGCATTTTTTTGCCTCGTGAATTGAGGACATTGTTCATGTATTAAAGGATTTGTGGACCATAGGTATATGTTGAATTATCGAAGACTTGCATTACTACGTCC

Ace file of the UniGene sp_v1.1_unigene1326

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleic acid binding protein, putative	-	-	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	nucleic acid binding	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%
Blast2go	chloroplast	GO:0009507	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABR1

Fln msg: your sequence is longer than subject: 944 - 163

Fln protein: MVEQSPSEIMQDAVLPSMSALVKPELLRHQDKDVRLIVVTCISEITRITAPEAPYNDDLMREIFQLIVGSFQGLDQMNSPTFGRRVTILETVAKVRSCVVMLDLECDDLILEMFQHFLASASENHTENVSASMQTIMTLVLDESEDISQQLLSVLLTSLRRDKQEASPAALALAVNVVKRCAEKLRPYLTAEMSAEGASQSDFQKEYHEIIYDICQQPLHLPLPNVSSTVQELQPDGSSAPGSVVGNDVQPNAQGASLSSGGKVSPDVKGLIRNEDNCVPEVDKGDHKDLQKISDGNAKEAGKENISHDLMPPGIVKASKGRRSSQARRSTTTPKVELDKSLDSKILESGKPTGNVREGRKSRRSETMPDTNKASNESVVGNDVQSLSSSKRKRGKSGKESKNSAPLDQPKKETVGMLSPGGSDVETLDLAASAQSKEVKVASPTQSSKDTINPTSPDRSSKEAGGLASPALVVEDLEGPVAAAQSSKMEEGLSSPTKSTKDNEDLVSLVPKTKDGVGSPSPEKSSKEKVGLASPTLKDDGTVTDSSRSKRGRTKFPGKTSDTKEESVLPGSTAVVSEDVSDLAGAEEIPAKSPSTNPQLAASTDSEAKVLKRPKRKLDTSNVSTPKPVDKNLHPIQKESRQTDTPDENQDDVQRPKKMQKVTSIQESAEKDVVQAGESSKRTPRSSTKRKSVSVLEKTPGTADGSEEAEKLVGRKIKVWWPQDKQFYNGTIESFDTKLKKHKVVYVDGDVEVLNLQKQRFEFIDENPATEKSPPVIASSKPVVDKSAKRRTTKGESPPVKEDVTESSTKRGSHSSKSRKESRSQSDVKPDNNGALVKSVEGGLSEKDASETIADSVMAPENIDQPTSGSRARKQKQGGESRKGRQVTSSSTPTDGTVKRSKGTRGGKSGTDQDKTGISSDGGARNSDDEPLNTWRSRSRSEQ*

Protein Length: 945

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATACTAAAACGAAAAATAATAAAAACGGCAGATAAATGCACTGTAGGAGCCCTCACTTGACCCATGGTTAAACCCTCTGCGTCTGCGAGCCTTTAGCTCGGAGGTTTAACCGAACCAGGGTTAAAGCACCGTCCACTGATACTTGAACAGGGGGCCGTGTTCTGCGAGGGGTCAGGTGAACTTTCAATGAAGAGAGAAGAAGAGTACTGGTTCAGTTTCTGGTAGCTGCACTCGAACCCTAGACCTGTGACGCGGCCTGAAACCCTAGGGTTTTGGGGGAAAATGGCGGGCATCGACAAAAAGGAACTCACGCAATAAGCTATTTGAAGCCGGCAAGCGGCGGGAACACCGCTGCCACTCAGTCTAAGGATGATCTCGTTCAGGCTTTGGAGAAAGTGGAGGACTATTTATCT_-_ATGGTGGAACAGTCACCTTCTGAGATAATGCAGGATGCAGTGCTTCCATCCATGAGTGCATTGGTAAAGCCAGAGCTTCTAAGGCACCAAGACAAAGATGTCAGGCTCATTGTTGTTACTTGCATTAGTGAAATCACTAGAATAACGGCACCCGAAGCACCATATAATGATGATTTAATGAGGGAAATATTTCAGTTGATTGTTGGAAGCTTTCAGGGACTAGATCAAATGAACAGTCCCACATTTGGAAGGAGGGTAACAATTTTAGAAACTGTTGCAAAAGTCAGGTCATGTGTTGTCATGCTGGACCTTGAGTGTGATGATCTCATCCTTGAAATGTTTCAACATTTCCTTGCCAGTGCTAGTGAGAATCACACTGAAAACGTATCTGCTTCAATGCAAACAATTATGACTTTGGTTTTGGATGAGAGTGAAGACATATCACAACAACTGTTATCTGTTTTACTGACTAGCTTGAGAAGAGACAAGCAGGAGGCTTCACCAGCTGCCCTTGCACTAGCTGTAAATGTTGTTAAACGCTGTGCAGAAAAGTTGAGGCCATATCTGACAGCAGAAATGTCAGCGGAAGGAGCTTCTCAGAGTGATTTCCAGAAGGAATACCATGAGATTATTTATGATATTTGTCAACAACCACTTCATTTGCCTCTGCCAAATGTTTCAAGTACAGTTCAGGAGCTTCAGCCAGATGGAAGCTCCGCCCCAGGATCTGTTGTTGGCAATGATGTACAACCAAATGCGCAAGGTGCAAGCTTGTCCTCAGGTGGCAAGGTATCTCCTGATGTTAAGGGGTTGATTAGGAATGAAGATAATTGTGTGCCTGAAGTTGATAAGGGTGACCACAAAGATTTGCAAAAGATCAGTGATGGCAATGCTAAAGAAGCTGGTAAGGAGAATATTTCTCATGATCTAATGCCTCCAGGAATAGTTAAGGCCAGTAAAGGTCGCAGAAGCAGTCAGGCCAGAAGGTCAACAACTACACCAAAAGTTGAGCTGGATAAATCATTGGATTCTAAAATATTGGAATCTGGCAAGCCCACTGGTAATGTCAGGGAAGGGAGGAAGAGTAGAAGGTCAGAAACAATGCCAGATACAAATAAAGCTTCCAATGAAAGTGTTGTTGGAAATGATGTTCAATCCTTGTCCTCGTCCAAAAGAAAAAGAGGCAAATCAGGTAAGGAAAGCAAAAATTCGGCCCCTTTAGATCAACCAAAGAAGGAAACGGTGGGTATGTTATCCCCAGGTGGATCAGATGTTGAAACATTAGACTTGGCTGCCTCAGCCCAAAGCAAAGAGGTGAAGGTAGCCTCTCCCACACAATCAAGTAAGGACACCATAAATCCGACCTCCCCGGACCGCTCAAGTAAGGAGGCTGGAGGTTTGGCCTCTCCAGCACTAGTAGTTGAGGATTTGGAAGGCCCAGTAGCTGCAGCACAATCAAGTAAGATGGAGGAAGGGTTGTCATCCCCAACAAAATCGACTAAGGACAATGAGGATTTGGTTTCATTAGTACCAAAAACTAAGGATGGAGTAGGTTCACCCTCTCCAGAAAAGTCAAGTAAAGAGAAAGTAGGTTTGGCCTCCCCTACTCTCAAGGATGATGGCACAGTGACAGACTCCTCTCGATCAAAACGAGGGCGTACAAAATTTCCTGGAAAGACATCAGACACTAAGGAAGAATCTGTGTTGCCAGGTTCAACAGCTGTAGTGTCAGAAGATGTTTCAGATCTAGCTGGGGCAGAAGAAATTCCTGCTAAATCACCTAGCACCAATCCGCAGTTGGCTGCAAGTACAGATTCAGAAGCAAAAGTATTGAAACGTCCAAAGAGAAAGTTAGACACCAGCAATGTTAGCACACCAAAGCCTGTAGATAAAAACTTACATCCAATTCAAAAGGAGTCACGGCAGACAGATACTCCAGATGAAAACCAAGATGATGTTCAACGTCCTAAAAAGATGCAGAAGGTCACTTCCATTCAAGAGTCTGCTGAAAAGGATGTAGTTCAGGCTGGTGAGAGTTCCAAGAGAACTCCAAGAAGTTCTACAAAGAGGAAGAGTGTTTCAGTGTTGGAGAAGACTCCTGGTACAGCAGATGGAAGTGAGGAAGCTGAGAAATTGGTTGGACGCAAGATCAAGGTTTGGTGGCCACAGGATAAACAGTTCTATAATGGTACTATTGAGTCCTTTGATACCAAACTGAAGAAGCACAAGGTGGTATACGTTGATGGGGATGTTGAAGTACTTAATCTCCAGAAGCAGCGTTTTGAGTTTATTGATGAAAACCCTGCGACTGAAAAGTCACCGCCAGTAATTGCAAGCTCAAAACCAGTTGTAGACAAGTCGGCAAAGAGGAGGACCACTAAAGGGGAAAGCCCACCCGTAAAAGAGGATGTGACAGAATCTTCAACAAAAAGGGGATCACATTCTTCCAAAAGCAGGAAGGAATCTAGGTCTCAGTCAGATGTGAAGCCTGATAACAATGGGGCATTGGTAAAAAGTGTAGAGGGTGGTTTATCTGAAAAGGATGCTTCAGAAACCATTGCAGACTCTGTTATGGCTCCAGAAAATATCGATCAACCAACAAGTGGCAGTAGGGCTAGGAAACAAAAGCAAGGAGGGGAGAGCAGAAAAGGTAGACAAGTGACATCTTCGAGTACTCCAACAGATGGAACTGTGAAAAGGTCCAAAGGAACTAGAGGAGGAAAAAGTGGAACAGACCAGGATAAAACAGGGATTTCATCCGATGGTGGGGCAAGGAATTCAGATGATGAACCTCTGAATACATGGAGGTCACGCTCACGATCTGAACAGTAA___GATTTGGGGATAGAGCTTTGTCTTATATTGGTAGGAGGATTGGGCTCATGTTATCAAATCTTATTTGGCTGGCAACCATTTCTGTTTGACACAGTTTCATTAGGTGTCCTGTTGTCCTGATTCACCTCATTATAAATTCCAATCATTTTCTAGTTAAGTTCATGATCCTTGTATTATGAATGCCACGATGGCCATGATCTGTGTATGCCTTTTTTCTTTTGCACAGGCTCTTGCACTTGTTCTACAGGCGTGTTCTTATAAATACAATTTGCAGTATTCTTATTTTTTATGAGATGTATTCAACGTCACTTTCTTTTCTCTAATTGATCATGATCATATAATTTACTTCCTCCATAGCTAGATTGTCTCAGCACATAGATACATTTGGAAGCGATAGCTCTTTGATCTAATAATAGCTACGTTCTGCATTTTTTTGCCTCGTGAATTGAGGACATTGTTCATGTATTAAAGGATTTGTGGACCATAGGTATATGTTGAATTATCGAAGACTTGCATTACTACGTCC

Fln Alignment:

sp_v1.1_unigene1326___VKPDNNGALVKSVEGGLSEKDASETIADSVMAPENIDQPTSGSRARKQKQGGESRKGRQVTSSSTPTDXXXXXXXXXXXXXXXXDQDKTGISSDGGARNSDDEPLNTWRSRSRSE
D5ABR1______________VKPDDNGVCAKSTEVDTSRRKAQ----DPFVFIDDKDRKSRG-KGRKQLLGSEGKKGGHFTISRKITSGTMENSKTRSSTT---DEDNQGSLSDSGSRDSDDEPLNTWWSRKKNE

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
658			80	20	0.995493
1110		88		11	0.923564
1157		85		14	0.993533
1170		28		71	1.0
1303	85		14		0.993533
1312		85		14	0.993533
2376		84	15		0.999986
2451	77		22		0.999999
2481	10	90			0.90298
2482		90		10	0.90298
2483	90		10		0.90298
2484	90		10		0.90298
2653		77	22		0.999999
2681	10		90		0.90298
2749	16		83		0.994512
2839	25	75			0.996473
2990			16	83	0.994512
3001			14	85	0.993533
3041	85		14		0.993533
3234		90		10	0.90298
3336			15	84	1.0
3338		15		84	1.0
3346			84	15	1.0
3349	84	10		5	0.999846
3350		89		10	0.999919
3657	84		15		1.0
3694		81		18	1.0
3702	58			33	1.0
3703	36			63	1.0
3734		50		50	1.0
3784		83		16	0.994512
3786		16		83	0.994512
3791			16	83	0.994512
3793		75	25		0.996473
3801			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain