SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1322

Length: 1606 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1322

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FAD-dependent oxidoreductase family protein	-	-	56%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	62%
Blast2go	protein	-	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9RYZ8

Fln msg:

Fln protein: MVFTLCTTSLVSTTIITGQSTRALLHIRMESSSTSTSSAKKKILVCGGGVIGVCTAYFLAKRGAQVTLIEKSGIACAASGKAGGFLALDWCDGGPVSSLARASFLLHQQLAEELDGSASYGYRRLNTLSLGIQEQLTSNSEKSGLKSTSHSKNSELIPSWVDGNGAVNPASIGTPQTTAQVHPQFFTRAVLSAAVEKYGLNVVMGEVQKVELEGGNEVRGVVVDGELVRGDAVVLALGPWSSKNEVISGLFRISGLKAHSIVLRPQNPEAIGPQALFLKYVTAQGISMDPEVYPRPTGEVYICGMSEEVEVPDDPQQVLPRKESIEMLQRIAQAVSRQLANAELQAEQACFLPCSDDGRPAIGKIPDINGAYVATGHSCWGILNAPATGASLAELIIDGHSKIVDLKPFDPARFKRATRKISIF*

Protein Length: 426

Fln nts: CGTCGTGACCTTGGCTGTCATGTGGCTTTTCCTTTCTCCACCCTATACATTCAAGTAGATAAAA_-_ATGGTATTCACACTATGTACAACATCTCTGGTTAGCACTACGATCATCACTGGCCAGTCCACTCGTGCACTGCTCCATATCAGAATGGAATCATCCTCAACTTCCACTTCCTCTGCGAAGAAGAAAATATTAGTCTGTGGAGGAGGCGTTATAGGGGTCTGCACCGCTTACTTCCTCGCCAAGAGAGGAGCCCAAGTGACACTGATAGAGAAGTCCGGTATAGCATGCGCGGCCTCGGGCAAGGCGGGGGGTTTCCTGGCCTTAGACTGGTGCGATGGCGGCCCGGTCTCCTCTCTTGCAAGGGCCAGCTTCCTTTTGCATCAACAACTCGCCGAAGAGCTCGACGGCTCGGCCTCTTATGGGTATCGGCGGTTGAACACTCTCAGTCTCGGTATTCAAGAACAACTCACTTCGAATTCAGAGAAATCGGGCCTTAAATCCACTTCGCATTCAAAGAACTCGGAGCTCATTCCGTCTTGGGTCGATGGCAACGGTGCTGTCAATCCTGCCTCCATCGGAACCCCTCAGACGACTGCCCAAGTTCATCCCCAGTTCTTTACCAGGGCGGTTCTCTCGGCCGCGGTTGAGAAGTATGGTCTTAACGTAGTCATGGGGGAAGTGCAGAAAGTGGAATTGGAAGGGGGCAATGAGGTTCGTGGGGTGGTTGTTGATGGAGAATTGGTGCGGGGCGATGCTGTTGTTCTGGCACTTGGGCCCTGGTCTTCTAAGAATGAAGTGATTTCGGGTCTGTTTAGGATATCTGGATTAAAGGCTCACAGCATTGTTCTTAGGCCACAGAACCCGGAGGCCATCGGACCGCAAGCTCTGTTTCTCAAGTACGTGACTGCTCAGGGAATATCCATGGATCCTGAGGTGTATCCCCGTCCCACAGGTGAGGTGTACATTTGTGGCATGTCAGAGGAAGTAGAAGTCCCAGATGATCCCCAGCAAGTTTTACCTAGAAAGGAATCTATAGAAATGCTGCAGAGGATAGCTCAGGCAGTGTCAAGGCAATTGGCAAATGCAGAACTTCAAGCAGAACAGGCTTGCTTTTTGCCATGTTCTGATGATGGCAGGCCAGCTATTGGTAAAATACCTGATATAAATGGTGCATATGTAGCTACAGGTCACAGCTGTTGGGGCATACTCAATGCACCTGCTACTGGTGCATCTTTGGCGGAACTTATTATAGATGGTCATTCAAAAATTGTAGATTTGAAGCCCTTCGATCCTGCTAGGTTTAAGAGGGCAACTCGGAAGATTTCAATATTTTAG___TACTACAAAAAACATCTTGTGTACCTTACCTTTCTTATGTCTATATTGATCAATCTCCAAAGAAACACATTGTATTGTATATAGCATTAGTAGTAAAGTAATTAAACCTCCTTGTTGCTTCAATAATTTAGCACCCTTTTCTAGGGTCTGTTTTACGATTTTTTACACTTGTTAATTGTTTAGAGAAATCGGAGGAATCCATACATTCTGACTCCAATGTTTATGTACCTCCTCAGTTGAAGTAGATATCCAAGTTGATTGATGTTC

Fln Alignment:

sp_v1.1_unigene1322___TAYFLAKRGAQVTLIEKSGIACAASGKAGGFLALDWCDGGPVSSLARASFLLHQQLAEELDGSASYGYRRLNTLSLGIQEQLTSNSEKSGLKSTSHSKNSELIPSWVDGNGAVNPASIGTPQTTAQVHPQFFTRAVLSAAVEKYGLNVVMGEVQKVELEGGNEVRGVVVDGELVRGDAVVLALGPWSSKNEVISGLFRISGLKAHSIVLRPQNPEAIGPQALFLKYVTAQGISMDPEVYPRPTGEVYICGMSEEVEVPDDPQQVLPRKESIEMLQRIAQAVSRXXXXXXXXXXXXCFLPCSDDGRPAIGKIPDINGAYVATGHSCWGILNAPATGASLAELIIDGHSKIVDLKPFDPARFKR
A9RYZ8______________TAYFLGKLGAKVTVVEKTEIACAASGKAGGFLALDWCDGSAVQDLARASFALHEQLAKELDGE-SYGYRRVGALSVSVEEPRNP-------KQVSEPAPKLGTPGWIDGSIKGSPSTIGTTLTNAQVHPQLFTRAVFSEAQEKYGASLLIGGVQEVKVEG-KRVTGVVVDGKLITGDAVVLAMGPWSSRNPLISSLTTVSGLKAHSIVLLPKDPNAISPHTLFLKYKTREGKSIDPEIYPRGTGEVYVCGMSEEVEVPEDAREILPRTESTAMLRRVAATVSSHLVDAELSVAQACFLPCSEDNVPVIGKLPCLENAYVATGHSCWGILNAPATGAALAELIVDGVPKTCSLKAFDPSRFSR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
954			85	14	0.993533
1181	10		90		0.90298
1182		90	10		0.90298
1184	10			90	0.90298
1186		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain