SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1306

Length: 1897 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1306

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calmodulin binding protein, putative	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protein	-	-	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8B6

Fln msg:

Fln protein: MGKQNSGKRLQKCR*NSGENCRSRHGKIKFNYKQQITPPFTAPPNSFLSSPGRKSHHYQSPVTPSPAARSATHVRSASPRSCGGRKSNSNYNEEIHTPASLSSGPRLGSRRTTVLDYSSVHDDCSYAYSPAVPNYMTATESARAKIRSQSAPRQRPATPEKERLSSVKKRLSFPAVATDASSMASSAVARKSPSLRSPSLKSMPGPIRIERSNFSASESNNGEETTPSSIGDLRKWLR*

Protein Length: 240

Fln nts: AGTTAAAGGCGAAGGACTTGATGCAGGCAAAGAAGAAATCTTCACACCATGACCGCCATGAAAAGGCAGCTTCAGATGTTGACGGTTTTCATACGAAGGAAAAGACTACCAGTAGCCAGGATGAGGTCGCGCCTGTAACTGGAAATGTTGAGAAACATGCCATTGCTGTGGCTGTAGCGACCGCAGCCGTTGCAGAAGCTGCAGTTGCATCTGCTCAAGCTGCTGCCCAAGTTGTTCGTATGACCCGACCTTCGAACCAGCGGGAAGTAAATCCAAGAGAACTTTGGGAAGTAAATCCAAGAGAACTTTGGGCGGCGACCAAGATACAGACAGCGTTCAGAGGATATCTGGCCAGGCGAGCTTTGCGAGCATTGAAGGGGCTTGTGAGGTTGCAGGCGCTGGTAAGAGGATATAATGTGAGAAAGCAAACCAATACCACATTACGTTGCATGCAGGCACTTGTCAGAGTTCAGGCGCGCGTGCGGGATCGTCGACTTCGTCTGGCCGAAGAAACTCATCAGTCTGCCCAACGCCCACCTCCTGAAAAACGATATCAGGAGGCCCTTGAAATACGATCTATGTCTCATTCGAGAAATGATTTGCAAGAAGACTGGGATGAGAGTGCGAGGACTGTGGAGGAAATTCAAGCAAAAGCTCAAATCAAGCATGAGGCCGCAGTAAAACGAGAAAGAGCCTTGGCCTATGCATTTTCTCACCAGCTGTGGAGGTCAGGGACAAAGGCAGGAGCATCGACATTCATAGAAGGCGATTCTGACAAAGCCCATTGGGGTTGGAGTTGGCTAGAGCGCTGGATGGCTGCAAGGCC_-_ATGGGAAAGCAGAACAGTGGAAAAAGACTGCAGAAGTGCAGATGAAATAGCGGTGAAAACTGTAGAAGTCGACATGGCAAGATCAAATTCAACTACAAACAACAGATCACGCCACCATTCACAGCCCCACCAAATAGCTTCTTGTCTTCCCCTGGTCGAAAATCCCATCATTATCAGTCTCCCGTAACACCATCACCAGCTGCAAGATCTGCAACACATGTTCGTTCAGCAAGTCCCAGATCATGTGGTGGGCGAAAATCAAATTCAAATTACAACGAAGAAATTCACACTCCTGCCAGCTTGTCCAGCGGGCCTAGACTTGGTTCAAGGCGTACCACTGTTCTAGATTATTCATCTGTACATGATGATTGTAGCTATGCATATTCACCCGCTGTTCCTAACTACATGACTGCCACTGAATCTGCAAGAGCCAAAATTCGTTCACAGAGTGCACCTAGGCAGCGGCCTGCAACTCCTGAAAAGGAACGCTTGAGTTCAGTAAAGAAAAGGCTCTCGTTTCCTGCTGTTGCTACAGATGCCAGTTCAATGGCTAGCTCTGCTGTGGCCCGCAAGAGCCCAAGTCTGAGGAGCCCAAGCCTGAAGAGCATGCCTGGTCCTATAAGAATAGAGAGATCAAACTTTTCAGCCTCTGAAAGCAACAATGGAGAAGAAACAACCCCTTCATCTATTGGGGATCTAAGAAAATGGCTGAGATGA___TTACTACAGCCAATGTGTTTATTCTACTTGTCATCATTAGGTCAGGGTTTGTATTAGCATAAAGTTGTCAAAAGTCTCATCAGCTCAGTTGATTGAGATTTTTTTTGTATTGCATGAAATTTTCCAGGTTACCGGACTCACTGTTATTTGCCCGTGTTTGAGACACTAATTTGATCTCGGGCCAATGACCGATATATATGTTGTTGTATCGTCCCCTCGATTAACATAATTATTAGTACACAAAGTTGTGTAAGTTCTCACTCTTCACCGTGATGTATTTCCAAGTTTCCAGTTTAACCAAGAATTTTACATAATGTCATGCGTTTGCTTCCATACGATATTGTACACTTGCAT

Fln Alignment:

sp_v1.1_unigene1306___MGKQNSGK-------------RLQKCR*NSGENCRSRHGKIKFNYKQQITPPFTAPPNSFLSSPGRKSHHYQ-SPVTPSPAARSAT-HVRSASPRSCGGRKSNSNYNEEIHTPAXXXXXXXXXXXXTTVLDYSSVHDDCSYAYSPAVPNYMTATESARAKIRSQSAPRQRPATPEKERLSSVKKRLSFPAVATDASSMASSAVAXXXXXXXXXXXXXMPGPIRIERSNFSASESNNGEETTPSSIGDLRKWLR
D5A8B6______________MGKQNCGKDCRSADEMAVKTVEVDMARSNSTTNNRSRHHS-------------QPPPNSFLSSPGRKSHHYQPAPVTPSPAAKSGTPHVRSASPRSCGGRKSN--YNEDIHTPASLSGGARLGSRRTTVVDYSSVHDDDSFAYSPAVPNYMTATESARAKIRSQSAPRQRPGTPEKERLSSVKKRLSFPAVATDASSMASSAVPRKSPSLRSPSLKSMPGPIRIERSNFSVSESNNGEETTPSSIGDLRKWLR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
665	85		14		0.993533
679	85	14			0.993533
761	60			40	1.0
1201			33	66	1.0
1374			15	84	0.999986
1467	75	25			1.0
1529	90	10			0.90298
1530	90		10		0.90298
1533	90	10			0.90298
1534	90	10			0.90298
1542	90			10	0.90298
1543		10	90		0.90298
1559	80		20		0.999996
1646	12			87	0.992554
1647	12			87	0.992554
1681	28		71		1.0
1699	7	14		78	0.999974
1745	66		33		1.0
1762	36	63			1.0
1790	63	36			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain