SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1302

Length: 1476 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1302

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tmx2, MGC79568, cgi-31, pig26, txndc14; thioredoxin-related transmembrane protein 2	-	-	2.0e-25	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	thioredoxin-like protein	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Blast2go	Thioredoxin fold	IPR012335	-	67%
Blast2go	Thioredoxin-like fold	IPR012336	-	67%
Blast2go	Thioredoxin domain	IPR013766	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXP1

Fln msg:

Fln protein: MSEEQQQQHLFPWLNVLVTEPHYAFHGLTFFSYFVIRQSTAEFLSEGFSHHLIRREIQTLLTFGVLVAIKMVKSKTWEAFIADTMLYAKGFLIMLTFILNHCLALWYVVVFLVIFLLCQQPPYSGQGNVKHLTPLQLETILTEGSTSQLWLVEFRALWSSHCIQASRCLSELSMMYSTENLQFGLVDLGRFPNAAAKFGITMSVNMGQLPTYILFKNGVEVSRIPEIDFEAKVATPTITKELLARHFELDQHLIEYMSSRF*

Protein Length: 263

Fln nts: ATGGGGACGCACCAAAGCGTAGGGATCTGGTTGAAACATTGGAAAACGCTCGTGTTGACGAGGTACAAACGTCGTGACCTTGGCTGTCACTCAATTCAGTTGTTTGGAACCTTAGCGTCGGTTTAATCCACATTCACTGTTAACA_-_ATGTCGGAGGAGCAACAGCAACAACACTTATTCCCATGGTTAAATGTGCTAGTTACAGAACCCCACTATGCATTCCATGGCCTCACTTTCTTCTCTTATTTTGTCATTCGTCAATCCACAGCAGAGTTTCTCTCAGAGGGCTTCTCTCATCATCTCATTCGTCGGGAAATTCAAACTCTCTTGACGTTCGGAGTATTGGTGGCAATAAAGATGGTTAAAAGCAAAACATGGGAGGCCTTTATAGCTGATACCATGCTTTATGCAAAGGGATTTCTAATAATGCTTACTTTCATACTGAATCATTGTTTGGCTCTCTGGTATGTGGTTGTTTTCTTAGTTATATTTTTGTTATGCCAGCAACCACCCTACAGTGGGCAAGGGAATGTCAAGCATTTGACCCCGCTGCAGTTAGAGACTATCCTGACGGAAGGGAGCACCTCACAATTATGGCTGGTGGAATTTCGGGCTTTGTGGTCTTCCCACTGTATTCAAGCAAGTCGATGTTTATCAGAACTTTCAATGATGTACTCGACTGAGAATTTGCAATTTGGATTGGTGGATTTGGGTCGCTTTCCAAATGCTGCGGCTAAATTTGGAATTACGATGAGTGTTAATATGGGGCAACTTCCAACATATATTTTATTCAAGAATGGGGTCGAAGTGTCCCGTATCCCAGAGATTGATTTTGAGGCAAAAGTGGCAACTCCAACAATTACAAAGGAGCTACTTGCACGTCATTTTGAACTTGATCAACATCTTATTGAGTACATGTCAAGCAGATTTTGA___AGTGTAGAGGCAAAAAAATTCTTCTTGTGGCATGTAGTGGAAACCACTTAGGAGTTACTGGCAGAGGTGGAAAATTCACTTTTGTTTATCTGCTTGAAACAAACCTTTTTTGTTACCCACTACTGATAATTATATCAGGTATTACTTCGCTAACCATGTGAGTTTATGTGGGAAATAGAAGATAATTGAGTTTATTATTCAAAAGGTTTGCTTTCTTCTGTTGCTTTTGACTGTCGATTTTGGAGAACAAGTTTCTGACTGCAAAAAGTAACCAGCCTTATTAGAAGGAAGAAAATTCATCGATCAGGTGCATATAAAGTGTAGAGGAGAAGTGAAGTGTATTTCTAGGATGCTCAGGTCTTCTTTCCTCATAATTTTAGCTAAGACGATATTTATTGTTGCTTTGCACTGTATCCTTTGAAGGTCTTCTGAGCAGAAATTCTGGAGAATTTTGATTGACTTCCCAGGTTCTTAAAGCAGGCCTGAATTTAGGAAGGATGATAAACTTAACTTTCTCTATCAAACATATTATGCTTTAAAGGTAG

Fln Alignment:

sp_v1.1_unigene1302___MSEEQQQQHLFPWLNVLVTEPHYAFHGLTFFSYFVIRQSTAEFLSEGFSHHLIRREIQTLLTFGVLVAIKMVKSKTWEAFIADTMLYAKGFLIMLTFILNHCLALWYVVVFLVIFLLCQQPPYSGQGNVKHLTPLQLETILTEGSTSQLWLVEFRALWSSHCIQASRCLSELSMMYSTENLQFGLVDLGRFPNAAAKFGITMSVNMGQLPTYILFKNGVEVSRIPEIDFEAKVATPTITKELLARHFELDQHLIEYMSSRF
A9NXP1______________MSEEQQ--HLFPWLNVLVTEPFYAFHGLTFFSYFVIRQSTAEFLSEGFSYHLIRREIQTLLTFGVLVAIKMVKSKTWEAFIADTMLYAKGFLIMLTFILNHCLAFWYVVIFLVIFLLCQQPPYSGQGNVKHLTPLQLETILTEGSTSQFWLVEFRALWSSRCIQASRCLSDLSLVYSTENLQFGLVDLGRFPNAAAKFGITMSVNMGQLPTYVLFKNGVEVSRIPDVDFEAKAATPTITKDLLARHFELDQHLIEYISNRF

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
957			25	75	0.996473
960		16		83	0.994512
962		16	66	16	0.988813
964	66		16	16	0.988813
967	16			83	0.994512
968	66	16			0.988813
969		16	83		0.994512
972		16	83		0.994512
973	83	16			0.994512
974	66	16		16	0.988813
975	66		16	16	0.988813
976		83		16	0.994512
977	16	83			0.994512
1052		90		10	0.90298
1053			10	60	1.0
1054	90		10		0.90298
1060	90	10			0.90298
1081	30		70		1.0
1140	27			72	1.0
1164			20	80	0.999996
1187		80		20	0.999996
1194		80	20		0.999996
1198	80			20	0.999996
1202	70			30	1.0
1268	75		25		1.0
1283		27		72	1.0
1313	25	75			1.0
1320	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain