SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1292

Length: 3074 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1292
CGTCGTGACCTTGGCTGTCACTCAGGGTTTCCCATGGGATTGGCGTAGTTTTTATCCAGATTCGTGTAGTTTCCGCTGAATCGGACCAACTGGGCCTCTTTGCCCGAACGCAATACCGCCCTGGAGGAGCAAATCTCGCGGTTTAAGAAGGTGGGGTGGCCCTTTTCCAGTACTAAAAAAATTAGACTGACAGAGTAGTTGAGTAGCTTCTGAGACTCCGTTAAGCTCTGAGTGCTCCCCGTCATCATATTTGTATAAGCATTGCGAGCTTTCTCTGGTTTCGCTGCAGTGGGTATTCGAGTTTTGTGAGAATTTCACGGCATTGACTGGTTGATACGCCGAGATCAGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTTCATGGTACAAGGTATACGGTATTGCTGAGCCGCATTGTTTGAGAACGGAGTCTCAGAATAATCGCTGTTTGTGGCTGCGGAAAACTGTGACAGATCCTTGGAGTCATGGGGAAGCATCCTGGGAAATGGCTGAAAACTATCTTATTTGGCAAGAAGTCCTCCAGATCTCAGTCTTCCGAGAAGCTGACGAAGAGGGATAGCGGCAGAGAAAATGCGAAGAAAGCATCAAAAGATAAAGACACAAAAGTTTTGGAGAATGAATCAGTGGAAGATCAGGTTCCAAACGCAATTCCGGCATCAGATCCATCATCTATGGGTAGAGAAATAGAACAGGATGTTCCTCTCCGAGATCGGAGCAAGCAGGCAGTATTTGCTGGGACAGAGAAAAATGTGTCTACATCAACTGATAAAGCAGTCACTCTTCCTACTATTGAAACTAAAGAAAAACCATCAGATGCTTCTGTTTCAGAAGCTGTTGACACTGTTCCTGATCTCGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGTGCAAACAGCTTTCAGGGGCTATCTGGCAAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCTCTTGTACGTGGTCACATGGTTAGAAGACAGGCTGCAGGAAGCTTACGCTGTTTACAAGCAATTATCAGATTGCAAGCTCTAGTCCGTGCTCACCAAGTCAGAATGTCGGATCAAGGAGTGGCTGTACAGGAGAGGCTTGAGCATAGGCGAAGACAGAATCCATCCAGAGGAAATGGAGTAGAGAGAAAAAGTTCCTCGATCTTTGTGGTCAGTAGTGCTTCACGGACTGAGAAGCTGTTAGCAAATGCATTTGCTCGTCAGATTCTAGAGTCTGCACCCATGGCCAAGTCTGTACGAATTCATTGTGGTCCCGATGATTCCAATTCGGGATGGGTTTGGTTGGAACGTTGGATGTGTGCTCAACCTTGGAGTTCATCTGGGAAGACAAGTAATAGCTCAAATCTGAGGTCTCAGAAGATAAGTGAGAGTGTACCCTCAACTGAGGCTGAAGTAGGAAGGCCAAAGCGCAGCGTGAGAAAGGTACCCCCCAATTCAATTCACGAGCATATTTCAAATCAGCTTGATATGGAATCTGAGAAGCCAAAGCGTGGCTTGAGAAAGGTGTTGAAATCAGCAGTAGATTCTGTTTCTGATCAACCTGAGGTTGAAGCTGAGAGACCTAAACGGAGTTTTAGAAGGGGGCTAAACTCAGCACCGGATTCTGTTCTAGATCAACCTGAGGTTGAGGCTGAGAAGGTTAAGCGTAACTTGAGAAAGGTCTCACATCCAATGGTGGAGTCTATGTCAGAGCAGCCAGAGGTAGAAATGGAGAAGGTTAAACGTAGCTTGAGAAAAATATCAGCTCCCGGGGTGGATTCTGCATCAGATCCACCAGAGGTCGACGCTGAGAAAATTAAGCGCAGCATGAGAAAGGTATCAAATTCAACAGTGGAGTCAGTATCAGATCATGTGGAGGTGGAAACTGAGATGTCCAAGCGCAGCATGAGAAAAGTTTCAAAGCCAACTTTGGATACTATTTCTGATCAACTCAGCCTACAATCTATAACAGGAATCTCTATGAATATAACTGGAAATGATGAATCGGTCCAGCATGTAGTCTGGATGAGACAGTTTCAGTTGTTCAGGAGATATCACCAGTTCAGCAATCAACAAGTCCAACTGAAAGCATTTCACGAGAGGATGCCTCATTGCAGCAAAGGATAACTTCTACTGTTCAAAATGGAGACTTTACACCCACCAAGCATGACAGTGTAGACCTTACCTCCAAGAGTGAGGCCGAGACTCCTGTGGTAGAGCATAAGTCTACCAGAAGACGTAGCTCATTTGGATCTGTTAAAACTGAGCATACTGAACATGCTTCTCAAGGCAGCCCATCGATTCCAAGTTACATGGCTGCTACTGAGTCGGCAAAAGCAAAGCTTCGTGGTCATTCTCCAAAGTTGAGTCCAGATGTTCAGGAAAAGGGAACTCCTATAATAAGGAGACATTCTCTTCCAGCAGCTCCTAATGGGAAACCAAATTCTGTATCACCAAGGACTCAGAGATTGTTGCCACAAGTTCATTCAACCAGGGGGCACACGAAAAGTGATCGATCTCTTGGCACTGAAAAGGCAATCCCTGTTCAAGTTGATTGGCGAAGGTGATTGGTATTCGAGCTTCTCTTGATATATTGTGCATTTGGAGTGTCTTCTCAGTTAGTAATGAATGCAAATCTCTGGAGAGACCTTTTATATATTATGAGTTTAGATTAAGTGTGCTGTACTTGATATTCACTCTAAATGTCTTGTGAGCCCTAAAATGCACCAAATTATGCTGTATATACAAAGAATATACCAGGTTGCATATTCATGACGTGACTGACAGCGTACATTTTTTTGGGTTCACATGGGACAGCTGATTCATTGACCGTAAACTGTCAGATTGCAGAATTTTTTTAGCTTCAGAATGTTTTGAGAAGGGTTTGGATATTATGTATGCTTTGAGCTAATATCTGTTCGATTTTATGATGTATAATAATATGGGTTTGACTTCAGAGGCAATGAAACTAGTTTTTTATATCCTGTGTAAGTATGTACTGATGATATAATTTGGATAAATTTGAGAGCTTTGTTTTCAGTGTTCAC

Ace file of the UniGene sp_v1.1_unigene1292

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calmodulin binding protein, putative	-	-	5.0e-40	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	calmodulin binding	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	IQ motif, EF-hand binding site	IPR000048	-	0.0	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS1

Fln msg: Overlapping hits, possible frame ERROR between 2049 and 2049,

Fln protein: MGKHPGKWLKTILFGKKSSRSQSSEKLTKRDSGRENAKKASKDKDTKVLENESVEDQVPNAIPASDPSSMGREIEQDVPLRDRSKQAVFAGTEKNVSTSTDKAVTLPTIETKEKPSDASVSEAVDTVPDLERIREESAAIKVQTAFRGYLARRAFRALRGLIRLQALVRGHMVRRQAAGSLRCLQAIIRLQALVRAHQVRMSDQGVAVQERLEHRRRQNPSRGNGVERKSSSIFVVSSASRTEKLLANAFARQILESAPMAKSVRIHCGPDDSNSGWVWLERWMCAQPWSSSGKTSNSSNLRSQKISESVPSTEAEVGRPKRSVRKVPPNSIHEHISNQLDMESEKPKRGLRKVLKSAVDSVSDQPEVEAERPKRSFRRGLNSAPDSVLDQPEVEAEKVKRNLRKVSHPMVESMSEQPEVEMEKVKRSLRKISAPGVDSASDPPEVDAEKIKRSMRKVSNSTVESVSDHVEVETEMSKRSMRKVSKPTLDTISDQLSLQSITGISMNITGNDESVQHVxxDETVSVVQEISPVQQSTSPTESISREDASLQQRITSTVQNGDFTPTKHDSVDLTSKSEAETPVVEHKSTRRRSSFGSVKTEHTEHASQGSPSIPSYMAATESAKAKLRGHSPKLSPDVQEKGTPIIRRHSLPAAPNGKPNSVSPRTQRLLPQVHSTRGHTKSDRSLGTEKAIPVQVDWRR*

Protein Length: 702

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTTCCCATGGGATTGGCGTAGTTTTTATCCAGATTCGTGTAGTTTCCGCTGAATCGGACCAACTGGGCCTCTTTGCCCGAACGCAATACCGCCCTGGAGGAGCAAATCTCGCGGTTTAAGAAGGTGGGGTGGCCCTTTTCCAGTACTAAAAAAATTAGACTGACAGAGTAGTTGAGTAGCTTCTGAGACTCCGTTAAGCTCTGAGTGCTCCCCGTCATCATATTTGTATAAGCATTGCGAGCTTTCTCTGGTTTCGCTGCAGTGGGTATTCGAGTTTTGTGAGAATTTCACGGCATTGACTGGTTGATACGCCGAGATCAGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTTCATGGTACAAGGTATACGGTATTGCTGAGCCGCATTGTTTGAGAACGGAGTCTCAGAATAATCGCTGTTTGTGGCTGCGGAAAACTGTGACAGATCCTTGGAGTC_-_ATGGGGAAGCATCCTGGGAAATGGCTGAAAACTATCTTATTTGGCAAGAAGTCCTCCAGATCTCAGTCTTCCGAGAAGCTGACGAAGAGGGATAGCGGCAGAGAAAATGCGAAGAAAGCATCAAAAGATAAAGACACAAAAGTTTTGGAGAATGAATCAGTGGAAGATCAGGTTCCAAACGCAATTCCGGCATCAGATCCATCATCTATGGGTAGAGAAATAGAACAGGATGTTCCTCTCCGAGATCGGAGCAAGCAGGCAGTATTTGCTGGGACAGAGAAAAATGTGTCTACATCAACTGATAAAGCAGTCACTCTTCCTACTATTGAAACTAAAGAAAAACCATCAGATGCTTCTGTTTCAGAAGCTGTTGACACTGTTCCTGATCTCGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGTGCAAACAGCTTTCAGGGGCTATCTGGCAAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCTCTTGTACGTGGTCACATGGTTAGAAGACAGGCTGCAGGAAGCTTACGCTGTTTACAAGCAATTATCAGATTGCAAGCTCTAGTCCGTGCTCACCAAGTCAGAATGTCGGATCAAGGAGTGGCTGTACAGGAGAGGCTTGAGCATAGGCGAAGACAGAATCCATCCAGAGGAAATGGAGTAGAGAGAAAAAGTTCCTCGATCTTTGTGGTCAGTAGTGCTTCACGGACTGAGAAGCTGTTAGCAAATGCATTTGCTCGTCAGATTCTAGAGTCTGCACCCATGGCCAAGTCTGTACGAATTCATTGTGGTCCCGATGATTCCAATTCGGGATGGGTTTGGTTGGAACGTTGGATGTGTGCTCAACCTTGGAGTTCATCTGGGAAGACAAGTAATAGCTCAAATCTGAGGTCTCAGAAGATAAGTGAGAGTGTACCCTCAACTGAGGCTGAAGTAGGAAGGCCAAAGCGCAGCGTGAGAAAGGTACCCCCCAATTCAATTCACGAGCATATTTCAAATCAGCTTGATATGGAATCTGAGAAGCCAAAGCGTGGCTTGAGAAAGGTGTTGAAATCAGCAGTAGATTCTGTTTCTGATCAACCTGAGGTTGAAGCTGAGAGACCTAAACGGAGTTTTAGAAGGGGGCTAAACTCAGCACCGGATTCTGTTCTAGATCAACCTGAGGTTGAGGCTGAGAAGGTTAAGCGTAACTTGAGAAAGGTCTCACATCCAATGGTGGAGTCTATGTCAGAGCAGCCAGAGGTAGAAATGGAGAAGGTTAAACGTAGCTTGAGAAAAATATCAGCTCCCGGGGTGGATTCTGCATCAGATCCACCAGAGGTCGACGCTGAGAAAATTAAGCGCAGCATGAGAAAGGTATCAAATTCAACAGTGGAGTCAGTATCAGATCATGTGGAGGTGGAAACTGAGATGTCCAAGCGCAGCATGAGAAAAGTTTCAAAGCCAACTTTGGATACTATTTCTGATCAACTCAGCCTACAATCTATAACAGGAATCTCTATGAATATAACTGGAAATGATGAATCGGTCCAGCATGTAxxxxxxGATGAGACAGTTTCAGTTGTTCAGGAGATATCACCAGTTCAGCAATCAACAAGTCCAACTGAAAGCATTTCACGAGAGGATGCCTCATTGCAGCAAAGGATAACTTCTACTGTTCAAAATGGAGACTTTACACCCACCAAGCATGACAGTGTAGACCTTACCTCCAAGAGTGAGGCCGAGACTCCTGTGGTAGAGCATAAGTCTACCAGAAGACGTAGCTCATTTGGATCTGTTAAAACTGAGCATACTGAACATGCTTCTCAAGGCAGCCCATCGATTCCAAGTTACATGGCTGCTACTGAGTCGGCAAAAGCAAAGCTTCGTGGTCATTCTCCAAAGTTGAGTCCAGATGTTCAGGAAAAGGGAACTCCTATAATAAGGAGACATTCTCTTCCAGCAGCTCCTAATGGGAAACCAAATTCTGTATCACCAAGGACTCAGAGATTGTTGCCACAAGTTCATTCAACCAGGGGGCACACGAAAAGTGATCGATCTCTTGGCACTGAAAAGGCAATCCCTGTTCAAGTTGATTGGCGAAGGTGA___TTGGTATTCGAGCTTCTCTTGATATATTGTGCATTTGGAGTGTCTTCTCAGTTAGTAATGAATGCAAATCTCTGGAGAGACCTTTTATATATTATGAGTTTAGATTAAGTGTGCTGTACTTGATATTCACTCTAAATGTCTTGTGAGCCCTAAAATGCACCAAATTATGCTGTATATACAAAGAATATACCAGGTTGCATATTCATGACGTGACTGACAGCGTACATTTTTTTGGGTTCACATGGGACAGCTGATTCATTGACCGTAAACTGTCAGATTGCAGAATTTTTTTAGCTTCAGAATGTTTTGAGAAGGGTTTGGATATTATGTATGCTTTGAGCTAATATCTGTTCGATTTTATGATGTATAATAATATGGGTTTGACTTCAGAGGCAATGAAACTAGTTTTTTATATCCTGTGTAAGTATGTACTGATGATATAATTTGGATAAATTTGAGAGCTTTGTTTTCAGTGTTCAC

Fln Alignment:

sp_v1.1_unigene1292___MGKHPGKWLKTILFGKKSSRSQSSEKLTKRDSGRENAKKASKDKDTKVLENESVEDQVPNAIPASDPSSMGREIEQDVPLRDRSKQAVFAGTEKNVSTSTDKAVTLPTIETKEKPSDASVSEAVDTVPDLERIREESAAIKVQTXXXXXXXXXXXXXXXXXXXXQALVRGHMVRRQAAGSLRCLQAIIRLQALVRAHQVRMSDQGVAVQERLEHRRRQNPSRGNGVERKXXXXXXXXXXXRTEKLLANAFARQILESAPMAKSVRIHCGPDDSNSGWVWLERWMCAQPWXXXXXXXXXXXXXXQKISESVPSTEAEVGRPKRSVRKVPPNSIHEHISNQLDMESEKPKRGLRKVLKSAVDSVSDQPEVEAERPKRSFRRGLNSAPDSVLDQPEVEAEKVKRNLRKVSHPMVESMSEQPEVEMEKVKRSLRKISAPGVDSASDPPEVDAEKIKRSMRKVSNSTVESVSDHVEVETEMSKRSMRKVSKPTLDTISDQLSLQSITGISMNITGNDESVQHVVLDETVSVVQEISPVQQSTSPTESISREDASLQQRITSTVQNGDFTPTKHDSVDLTSKSEAETPVVEHKSTRRRSSFGSVKTEHTEHASQGSPSIPSYMAATESAKAKLRGHSPKLSPDVQEKGTPIIRRHSLPAAPNGKPNSVSPRTQRLLPQVHSTRGHTKSDRSLGTEKAIPVQVDWRR
B8LKS1______________MGKHPGKWLKTILFGKKSSRSQPSEKLTKRDSGRENAKKASKDKDTQILENESMQDQVPNAILGSDPSSMGREIEQHIPLRDRSKQAVFAGTEKNLSTSTDKAVTLPTIEIKEKPSDASVSEAADTVHDLERIREESAAIKAQTAFRGYLARRAFRALRGLIRLQALVRGHMVRRQAAGSLRCLQAIIRLQALVRAHQVRMSEQGLAVQERLEYRRRQNPSRGNELERKSSSIFVVNSASRSEKLLTNAFARQILESAPMTKSLRIHCGPDDSDSGWVWLERWMSAQPWSSSGQTSTSSNLRSQKISENVPSTELEVGRPKRSMRKV-PSSTQEHISNQLDMESEKPKRGLRKVLKSAVDSVSDQPEVEAEKPKRNFRKGLNSAPDSVTDQHEVEAEKVKRNLRKVSHPMVEYVSEQPEVEIEKVKRSIRKVSNSTVDSVSDHLEVETEMPKRNLRKVS--------------------------KPTLDTISDQLGMQSTTGSSMNMTGNDEPVQHVVVDETVSVVQEISPVQQSTSPTESIAREDASLQQRTTS-VLNGDFTPTKQDSVDLTSKNESETPVVEHKSTRRRSSFGSVKTEHPEHASQGSPSIPSYMAATESAKAKLRGHSPRSSPDVQEKGTPIIRRHSLPAAPNGKPNSVSPRTQRLLPQVQSTRGHMKSDRSLGTEKAIPVQVDWRR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1204		25	75		0.996473
1223	75			25	0.996473
1304	20		80		0.995493
1324	11		88		0.923564
1325			88	11	0.923564
1327	88		11		0.923564
1328			11	88	0.923564
1395	10	90			0.90298
1746	87			12	0.992554
1908			10	90	0.90298
2247	12	87			0.992554
2250			12	87	0.992554
2686	8	91			0.999766
2987			10	90	0.90298
3013	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain