SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1290

Length: 3627 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1290
ATGGGGTCGCCCATGCCGTGACTGCCTGGTGAGGTTCCCAAGCGAACAGTCAACATAAGGACCAGATGGGGGTGCTACATTTGGCCCATTTGTAGCACCAGCATCAACTTGAAGCAGTGGCGTTCGTTACTTGTTTTGCGGGAAGTAACAAGCGCAAAGCTTCTAAAAGTTTAATAATCGGCAGCTCGGGAGGTGCAGAGAGCAATATTCCGATCTCAATCAGGTGGTGGATAAACGCAGCGATCAATCAGGCATATAAGCTAGGAGTGTCGAACGTCTTTTTGTTTGTGAATCATGGAGTCCGAAGAGAATAAGCCTCTGATTGCAGAGGATTTCAATAAAGCTATGGTTGATCTGGAACGTGTGCCTTTGGACGAGGTGTTTGAACAGCTACGGTGTTCAAGAGCAGGACTTACATCACAGGAAGGGGCGCTTCGTTTGCAAATTTTTGGTTTCAACAAATTAGAGGAGAAACCCGAGAACAAATTCTTGAAGTTTCTAAGTTTTATGTGGAACCCGTTGTCATGGGTCATGGAGGCTGCAGCACTTATGGCTATTGCTCTTGCTAATGGAGGGGGTGAACCTCCTGACTGGCAAGACTTTATTGGAATCATTTGTCTGTTGTTTATAAACTCAACAATCAGCTTCCTAGAAGAGAACAATGCAGGTAACGCTGCAGCTGCTCTCATGGCGCGTTTAGCTCCTAAAACGAAGGTTCTCAGAGATGGGCAATGGCAAGAACAGGATGCAGCAATTCTGGTTCCAGGTGATGTTATTAGCATTAAACTAGGAGATATTGTTCCTGCAGATGCTCGTTTACTTGAAGGTGATCCTTTAAAAATTGACCAGTCAGCCTTGACTGGTGAATCTCTTCCTGTTACAAAGAAGCCTGGAGACGAAGTCTTCTCCGGTTCAACGTGTAAGCAAGGAGAAATTGGGGCTGTTGTCATTGCTACCGGTGTTCATACATTCTTTGGTAAAGCTGCCCATCTTGTTGACTCGACAGAAGTTGTTGGGCATTTCCAGAAGGTTCTTACAGCTATTGGAAATTTCTGTATTTGTTCCATAGCTATTGGCATGATTTTGGAGATTATTGTCATGTATCCCATTCAACACCGATCCTACAGAAAGGGAATCAACAATCTCCTGGTTTTGCTAATCGGTGGTATTCCCATTGCTATGCCGACTGTTCTTTCCGTCACTTTGGCCATTGGCTCTCGTCGTCTCTCCCAGCAGGGTGCAATTACAAAGCGAATGACTGCAATTGAAGAAATGGCTGGAATGGATGTTCTTTGCAGTGATAAAACCGGCACTCTTACTCTAAATCGTCTCACTGTAGACAGGAATCTTATTGAGGTATTCCACAAGGATATGGACAGAGATACAGTAGTCCTGCTTGCGGCAAGAGCATCCAGACTAGAGAATCAAGATGCTATTGATGCTGCGATTACAAACATGCTCGGTGATCCTAGAGAGGCACGAGCAAACATTACAGAAGTTCATTTTTTTCCTTTCAATCCTGTCGATAAGCGGACAGCCATTACCTATATTGATGCTGATGGAAATTGGTATCGTGCCAGCAAAGGAGCTCCGGAGCAGATTCTTGAAATGAGTCAGGAGAAATCTGAGATTGCTGGACGAGTACATGCAATCATTGACAAGTTTGCAGAGCGCGGATTGCGATCATTAGCTGTTGCAATGCAGGAAGTGCCTGAAAAATCTAAAGAAAGCCCTGGAGGTCCTTGGATGTTTTGTGGATTGTTGCCATTGTTTGATCCTCCTCGACATGACAGCGCTGAAACAATTCGGCGAGCTCTTAAGCTTGGAGTTTGCGTGAAGATGATTACAGGTGACCAACTAGCAATTGCTAAAGAAACTGGCAGGCGCCTTGGAATGGGAACAAATATGTATCCCTCATCATCATTGCTGGGCCATGACAAAGATGAGGTTACAGAAGCCCTACCTGTCGATGAGCTTATCGAGAAAGCTGATGGGTTTGCGGGTGTCTTCCCAGAACACAAATACGAGATTGTCAGAAAGCTTCAAGAGAAAAAACATATTTGTGGGATGACAGGCGATGGAGTTAATGATGCTCCAGCTTTGAAGAAGGCAGATATTGGAATTGCAGTGGCAGATGCTACTGATGCTGCCAGGAGTGCAGCTGACATTGTTCTAACAGAGCCTGGCCTCAGTGTCATTGTTAGCGCTGTGCTTACAAGTCGTGCCATATTCCAGAGGATGAAGAATTATACAATTTATGCAGTATCCATCACCATTCGTATTGTGCTTGGTTTCATGCTTCTGGCTTTAATATGGGAATATGATTTTCCTCCCTTCATGGTCTTGATCATAGCTATCCTTAATGATGGTACTATTATGACCATCTCCCAAGATAGAGTAAAACCATCACCTGGGCCTGATAGTTGGAAGCTCAATGAAATATTTGCAACAGGGGTTGTTATTGGCACTTACCTTGCCTTGATCACTGTCCTATTTTACTGGACTATAACTAGCACAACATTCTTTGAGACACATTTCCATGTGAGATCAATCAGTAGCAATGCTGAAGAGGTCACTGCTGCTATTTACTTGCAAGTGAGCATAGTTAGCCAAGCCCTTATATTTGTCACACGTTCTCAAAGCTGGTCATTTATGGAAAGACCTGGCACTCTCCTAATGTGCGCTTTTGTGGTAGCCCAGTTGATTGCAACGTTGATAGCAGTATATTCACACTGGGGATTTGCTTCCATAAAAGGCATCGGATGGGGATGGGCTGGAGTGATCTGGCTTTACAGTTTGGTATTCTATGTTCCTTTAGATATAATCAAGTTTGCAGTGCGTTACACTCTTAGTGGACAAGCTTGGGAATTGCTCTTTGAGAGGAAGACGGCTTTCACAACAAAGAAGGATTACGGAAGAGAGGACAGAGAAGCCAAATGGGCACTTGCTCAGAGAACTTTACATGGTCTGATTGCTCCTGATGCCTACACTTCTGCTGGGCGTTCATCCATGATTGCAGAGCAAGCCAGAAGACGTGCAGAAATTGCAAGGTTGAGAGAAGTGCATACATTGAAGGGACACGTGGAATCAGTTGTTCGGTTAAAGGGATTAGACATCAATGCCATTCAACAAGCATATACTGTTTAAACCAGGCCAACTACATTCAGAGGATTATATACTCAATAGGATTTGCCTTGAAATTTGGAAAGACATCTGAGCAACACTGGTTTGTTTCATAAAACCATACTGGCAAGTCACTAGGAGAGAGAATTCATCAATCACAGAAACAGCGAGAGGCTGAATTTGCCTGTCATTATCACAATGTTTGTTTCTACTTGCATGGGCTCTCAAACAAGTTCAGAGTTCAGATTTGTGAGGCCCGTTGTTAGATTGAAATGAATCAATTCTTAGGAGATGAGTTGTAGAGCTTTTTATGTGCTCATAAGATTTTTGTTTACTTATTCGTTGCATGTATTTGTGCACATGTATTCAGGAAGTTGTGGACTTTTTATTTTAACTGTAGATTCATTTTCCTAGTTTTTCTATCATCATATCGTCACTCAGTAATAGAAATTTTCGTGCAAAATCTTCCAGAAATTTTCAGTTGTCAGCTTGGGATTAGCTCCA

Ace file of the UniGene sp_v1.1_unigene1290

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	autoinhibited H+ ATPase	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	autoinhibited h+ atpase	-	-	89%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, P-type, H+ transporting proton pump	IPR000695	-	89%
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	89%
Blast2go	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	89%
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	89%
Blast2go	ATPase, P-type, plasma-membrane proton-efflux	IPR006534	-	89%
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	89%
Blast2go	ATPase, P-type phosphorylation site	IPR018303	-	89%
Blast2go	HAD-like domain	IPR023214	-	89%
Blast2go	ATPase, P-type, transmembrane domain	IPR023298	-	89%
Blast2go	ATPase, P-type, cytoplasmic domain N	IPR023299	-	89%
Blast2go	ATPase, P-type, cytoplasmic transduction domain A	IPR023300	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS1

Fln msg:

Fln protein: MESEENKPLIAEDFNKAMVDLERVPLDEVFEQLRCSRAGLTSQEGALRLQIFGFNKLEEKPENKFLKFLSFMWNPLSWVMEAAALMAIALANGGGEPPDWQDFIGIICLLFINSTISFLEENNAGNAAAALMARLAPKTKVLRDGQWQEQDAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKKPGDEVFSGSTCKQGEIGAVVIATGVHTFFGKAAHLVDSTEVVGHFQKVLTAIGNFCICSIAIGMILEIIVMYPIQHRSYRKGINNLLVLLIGGIPIAMPTVLSVTLAIGSRRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFHKDMDRDTVVLLAARASRLENQDAIDAAITNMLGDPREARANITEVHFFPFNPVDKRTAITYIDADGNWYRASKGAPEQILEMSQEKSEIAGRVHAIIDKFAERGLRSLAVAMQEVPEKSKESPGGPWMFCGLLPLFDPPRHDSAETIRRALKLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGHDKDEVTEALPVDELIEKADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSAADIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWEYDFPPFMVLIIAILNDGTIMTISQDRVKPSPGPDSWKLNEIFATGVVIGTYLALITVLFYWTITSTTFFETHFHVRSISSNAEEVTAAIYLQVSIVSQALIFVTRSQSWSFMERPGTLLMCAFVVAQLIATLIAVYSHWGFASIKGIGWGWAGVIWLYSLVFYVPLDIIKFAVRYTLSGQAWELLFERKTAFTTKKDYGREDREAKWALAQRTLHGLIAPDAYTSAGRSSMIAEQARRRAEIARLREVHTLKGHVESVVRLKGLDINAIQQAYTV*

Protein Length: 952

Fln nts: ATGGGGTCGCCCATGCCGTGACTGCCTGGTGAGGTTCCCAAGCGAACAGTCAACATAAGGACCAGATGGGGGTGCTACATTTGGCCCATTTGTAGCACCAGCATCAACTTGAAGCAGTGGCGTTCGTTACTTGTTTTGCGGGAAGTAACAAGCGCAAAGCTTCTAAAAGTTTAATAATCGGCAGCTCGGGAGGTGCAGAGAGCAATATTCCGATCTCAATCAGGTGGTGGATAAACGCAGCGATCAATCAGGCATATAAGCTAGGAGTGTCGAACGTCTTTTTGTTTGTGAATC_-_ATGGAGTCCGAAGAGAATAAGCCTCTGATTGCAGAGGATTTCAATAAAGCTATGGTTGATCTGGAACGTGTGCCTTTGGACGAGGTGTTTGAACAGCTACGGTGTTCAAGAGCAGGACTTACATCACAGGAAGGGGCGCTTCGTTTGCAAATTTTTGGTTTCAACAAATTAGAGGAGAAACCCGAGAACAAATTCTTGAAGTTTCTAAGTTTTATGTGGAACCCGTTGTCATGGGTCATGGAGGCTGCAGCACTTATGGCTATTGCTCTTGCTAATGGAGGGGGTGAACCTCCTGACTGGCAAGACTTTATTGGAATCATTTGTCTGTTGTTTATAAACTCAACAATCAGCTTCCTAGAAGAGAACAATGCAGGTAACGCTGCAGCTGCTCTCATGGCGCGTTTAGCTCCTAAAACGAAGGTTCTCAGAGATGGGCAATGGCAAGAACAGGATGCAGCAATTCTGGTTCCAGGTGATGTTATTAGCATTAAACTAGGAGATATTGTTCCTGCAGATGCTCGTTTACTTGAAGGTGATCCTTTAAAAATTGACCAGTCAGCCTTGACTGGTGAATCTCTTCCTGTTACAAAGAAGCCTGGAGACGAAGTCTTCTCCGGTTCAACGTGTAAGCAAGGAGAAATTGGGGCTGTTGTCATTGCTACCGGTGTTCATACATTCTTTGGTAAAGCTGCCCATCTTGTTGACTCGACAGAAGTTGTTGGGCATTTCCAGAAGGTTCTTACAGCTATTGGAAATTTCTGTATTTGTTCCATAGCTATTGGCATGATTTTGGAGATTATTGTCATGTATCCCATTCAACACCGATCCTACAGAAAGGGAATCAACAATCTCCTGGTTTTGCTAATCGGTGGTATTCCCATTGCTATGCCGACTGTTCTTTCCGTCACTTTGGCCATTGGCTCTCGTCGTCTCTCCCAGCAGGGTGCAATTACAAAGCGAATGACTGCAATTGAAGAAATGGCTGGAATGGATGTTCTTTGCAGTGATAAAACCGGCACTCTTACTCTAAATCGTCTCACTGTAGACAGGAATCTTATTGAGGTATTCCACAAGGATATGGACAGAGATACAGTAGTCCTGCTTGCGGCAAGAGCATCCAGACTAGAGAATCAAGATGCTATTGATGCTGCGATTACAAACATGCTCGGTGATCCTAGAGAGGCACGAGCAAACATTACAGAAGTTCATTTTTTTCCTTTCAATCCTGTCGATAAGCGGACAGCCATTACCTATATTGATGCTGATGGAAATTGGTATCGTGCCAGCAAAGGAGCTCCGGAGCAGATTCTTGAAATGAGTCAGGAGAAATCTGAGATTGCTGGACGAGTACATGCAATCATTGACAAGTTTGCAGAGCGCGGATTGCGATCATTAGCTGTTGCAATGCAGGAAGTGCCTGAAAAATCTAAAGAAAGCCCTGGAGGTCCTTGGATGTTTTGTGGATTGTTGCCATTGTTTGATCCTCCTCGACATGACAGCGCTGAAACAATTCGGCGAGCTCTTAAGCTTGGAGTTTGCGTGAAGATGATTACAGGTGACCAACTAGCAATTGCTAAAGAAACTGGCAGGCGCCTTGGAATGGGAACAAATATGTATCCCTCATCATCATTGCTGGGCCATGACAAAGATGAGGTTACAGAAGCCCTACCTGTCGATGAGCTTATCGAGAAAGCTGATGGGTTTGCGGGTGTCTTCCCAGAACACAAATACGAGATTGTCAGAAAGCTTCAAGAGAAAAAACATATTTGTGGGATGACAGGCGATGGAGTTAATGATGCTCCAGCTTTGAAGAAGGCAGATATTGGAATTGCAGTGGCAGATGCTACTGATGCTGCCAGGAGTGCAGCTGACATTGTTCTAACAGAGCCTGGCCTCAGTGTCATTGTTAGCGCTGTGCTTACAAGTCGTGCCATATTCCAGAGGATGAAGAATTATACAATTTATGCAGTATCCATCACCATTCGTATTGTGCTTGGTTTCATGCTTCTGGCTTTAATATGGGAATATGATTTTCCTCCCTTCATGGTCTTGATCATAGCTATCCTTAATGATGGTACTATTATGACCATCTCCCAAGATAGAGTAAAACCATCACCTGGGCCTGATAGTTGGAAGCTCAATGAAATATTTGCAACAGGGGTTGTTATTGGCACTTACCTTGCCTTGATCACTGTCCTATTTTACTGGACTATAACTAGCACAACATTCTTTGAGACACATTTCCATGTGAGATCAATCAGTAGCAATGCTGAAGAGGTCACTGCTGCTATTTACTTGCAAGTGAGCATAGTTAGCCAAGCCCTTATATTTGTCACACGTTCTCAAAGCTGGTCATTTATGGAAAGACCTGGCACTCTCCTAATGTGCGCTTTTGTGGTAGCCCAGTTGATTGCAACGTTGATAGCAGTATATTCACACTGGGGATTTGCTTCCATAAAAGGCATCGGATGGGGATGGGCTGGAGTGATCTGGCTTTACAGTTTGGTATTCTATGTTCCTTTAGATATAATCAAGTTTGCAGTGCGTTACACTCTTAGTGGACAAGCTTGGGAATTGCTCTTTGAGAGGAAGACGGCTTTCACAACAAAGAAGGATTACGGAAGAGAGGACAGAGAAGCCAAATGGGCACTTGCTCAGAGAACTTTACATGGTCTGATTGCTCCTGATGCCTACACTTCTGCTGGGCGTTCATCCATGATTGCAGAGCAAGCCAGAAGACGTGCAGAAATTGCAAGGTTGAGAGAAGTGCATACATTGAAGGGACACGTGGAATCAGTTGTTCGGTTAAAGGGATTAGACATCAATGCCATTCAACAAGCATATACTGTTTAA___ACCAGGCCAACTACATTCAGAGGATTATATACTCAATAGGATTTGCCTTGAAATTTGGAAAGACATCTGAGCAACACTGGTTTGTTTCATAAAACCATACTGGCAAGTCACTAGGAGAGAGAATTCATCAATCACAGAAACAGCGAGAGGCTGAATTTGCCTGTCATTATCACAATGTTTGTTTCTACTTGCATGGGCTCTCAAACAAGTTCAGAGTTCAGATTTGTGAGGCCCGTTGTTAGATTGAAATGAATCAATTCTTAGGAGATGAGTTGTAGAGCTTTTTATGTGCTCATAAGATTTTTGTTTACTTATTCGTTGCATGTATTTGTGCACATGTATTCAGGAAGTTGTGGACTTTTTATTTTAACTGTAGATTCATTTTCCTAGTTTTTCTATCATCATATCGTCACTCAGTAATAGAAATTTTCGTGCAAAATCTTCCAGAAATTTTCAGTTGTCAGCTTGGGATTAGCTCCA

Fln Alignment:

sp_v1.1_unigene1290___MESEENKPLIAEDFNKAMVDLERVPLDEVFEQLRCSRAGLTSQEGALRLQIFGFNKLEEKPENKFLKFLSFMWNPLSWVMEXXXXXXXXXXNGGGEPPDWQDFIGIICLLFINSTISFXXXXXXXXXXXXXXXXXXPKTKVLRDGQWQEQDAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKKPGDEVFSGSTCKQGEIGAVVIATGVHTFFGKAAHLVDSTEVVGHFQKVLTAIGNFCICSIAIGMILEIIVMYPIQHRSYRKXXXXXXXXXXXXXXXAMPTVLSVTLAIGSRRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFHKDMDRDTVVLLAARASRLENQDAIDAAITNMLGDPREARANITEVHFFPFNPVDKRTAITYIDADGNWYRASKGAPEQILEMSQEKSEIAGRVHAIIDKFAERGLRSLAVAMQEVPEKSKESPGGPWMFCGLLPLFDPPRHDSAETIRRALKLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGHDKDEVTEALPVDELIEKADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWEYDFPPFMVLIIAILNDGTIMTISQDRVKPSPGPDSWKLNEIFATGVVIGTYLALITVLFYWTITSTTFFETHFHVRSISSNAEEVTAAIYLQVSIVSQALIFVTRSQSWSFMERPGTLLMCAFVVAQLIATLIAVYSHWGFASIKGIGWGWAGVIWLYSLVFYVPLDIIKFAVRYTLSGQAWELLFERKTAFTTKKDYGREDREAKWALAQRTLHGLIAPDAYTSAGRSSM-----IXXXXXXXXXXXXXXXVHTLKGHVESVVRLKGLDINAIQQAYTV
B8LQS1______________MTPDEKATSGLEGIKNESVDLERIPIEEVFEQLRCTREGLTSNEGENRLQIFGFNKLEEKKESKFLKFLGFMWNPLSWVMEIAAIMAIALANGDNKPPDWQDFLGIVVLLVINSTISFVEENNAGNAAAALMAGLAPKTKVLRDGRWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGEEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGIVIEIIVMYPIQHRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKDVDKDHVVLLAARASRVENQDAIDAAIVGMLADPKEARAGVTEVHFLPFNPVEKRTALTYVDAHGKWHRASKGAPEQILDLCHCKEDVRNKVHSVIDKFAERGLRSLAVARQEVPERTKESGGTPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGNDKDASIASLPVDELIEKADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWRFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGTYLAVMTVIFFWAMHKTDFFPNKFGVRPIRDSPHELTSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMTAFIIAQLIATFLAVYADFSFANIKPIGWGWAGVIWLYSLVFYFPLDIFKFAVRYALSGKAWDNLIERKTAFTSKKDYGKEEREAQWAHAQRTLHGLHPPETHLFNERSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDTIQQSYTV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1273	75			25	0.996473
1274	75		25		0.996473
1275			25	75	0.996473
1510		33		66	0.997452
1513		33		66	0.997452
2185		10		90	0.90298
2219	90		10		0.90298
2798			90	10	0.90298
3210	17		76		1.0
3264	79		20		1.0
3430		8		92	0.999718

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain