SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1263

Length: 2246 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1263
CGTCGTGACCTTGGCTGTCACTCAAAAACTCGTCAAGTCTGGAGATGAAGAAGATCGAGACAGGACAAATTGGGTGTCACTCTGTCATTTCCTCAATGTCTGCAACTTTTATCTCTCGCAAATAGAGGTATTCAATGCACAGCCTGCAGCCATCACTTTTCAGATTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTGCTGTGGCTCCAGACAAATTTGCAAACAGCATTATTCAGGTTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTTCTGTAGCTCCAGACCAAGCTGATCAACAGTGGGCTTTACATCTGGTACTGAGAGGTATCTTCTCTGTTAACCCCTATCACATAAAATTGTATTCTAAAAAACTTTATGAATGATTGTTATTTTTTCTTCTGCAACCTATAAAACCCTACGTAGGCCGTTCCCAAAATACCCAACTGGCTTGCGCCGATTTTTTCATCCCAAACACCCTTAGACCGCCTGCATTGAGTTGGGTTTCAGTCAAAATTGCCTCATGGCCATGGAAGTTGATGGGTTTTGCGAGCAACATGGGGGATCCCTTGAGTTAGATTGGAACCGCTTGAATTCTGATATCACCGAGGTTGTACTTGCTCGGCTGCCAGTCAGCTCCATTGTTCGCTCGTGTATCGTCTGCAAGCACTGGTATTCTCTCATAACCCAGCCCTCGTTTACAGCCAGGCTTAGGGTTTGCAAGAAACCCTGGTTTTTCCTGTATGGCCAAAACAACATTTTCTTGAAGAATAACCAGGCATTTGGCTTTGATCCAGAGGCCAATGAATGGATCCGTTTGCCTACTTCATCGTTTCCCCAGCCCTGTGCTGAGGATTCCTTGGCAGGTTCAGGAGGGTTTCTGTTTGCCACCACTGGGACTGCCTGTTCTAGGTTCTGTTATGCCCCGGTGTTGAAGAGTTCATGGAAGGTAACTGCCCCGCTAAGGTTCTCCAGGCGCCAGCCTCTGGTGGGAGTGTTTAAGGAGGGCCATTATGGGTTCATTGTAGTTGGGGGTGTCAGATTCATTGGGGGGCTGGTTGATATCGAGGATAGATTGGCTGTTGAAATCTACGACTCTAGCAAAGATTCATGGGAACTCTGTGCCCCTTTGCCAGCGGATTTCCGATCCGGTAACTCCTCGCAGTGGCTGACTTCTGCATTGCTGAAAGGGAAATTCTATGTCTTCGGGATCTATTCAGGGTATATTTCAGCGTTCGATCTGCAGCACAAGGCATGGGGTGGTGTCCAGATTGTTCGCCCCCCGGGGATTATATTCTCATTTCTTCTGGCTTGCCAGAACAACCTTATCTTGGCTGGTTTGCGCAATGGCGCCGATGGGCCGATGTTTAATCTCTGGAAAGTCGAGGAAGAATCGATGGCGTTCTGTGAGGTTGGTTCCATGCCCCAGGAGCTTCTGTATTCTTTGTTTGATAGTGAGGAGGATGATAAATTTGCAAGCTTAAAGTGTGTGGGGCTTGGGAGTCTCATTTATGTCTTCAATGAAGAACATCACAAGATGTATCCTGCTTGTGTCTGTGACATTTCTCCGAAATTGGATTGCACCTGGACAAAAGTTCCTCCGTTGCCTTTCCCTGTAAATAGGTTCCACAAGGTTATCAGCTTCTGTTCCACAGTTGCACTTGATAGCATTCTTTGATTCGAGATGTCACACCATTGGTTGCATGCCTTACATATTGTTGGTTCCAGTCATATGGAGTCATGTAAAACCCTTTATACATGCCTGGTGAGTGTGGCTAACATCAAGGATCGGTAGAAGAATTTGCAGTTCTATTTTATTGGCTTGCTTTACTTATCTACATTTGCGGAGCAACTTGCAAATCGGACAATGGGTTTTCGGGTGTGTACAGTGGCCAGCTATCATATGTAAAATTCCTGTTTGTTGCGGTTGTCTAAATTTATTTCTTGGGGTCTGTATAAAATGGGTGATGAGGGGCTGAGTTTATTAATCCGCTCCTCATTTACTCTTAGAAGTCTATGATTTGATTAGGGTTGGTTCTATGCTTCACAAAGAAGAATCCATGATAAGTTATTTTAATAGATTTTATAATTTTCAAGCAGGTGAACTTATAGCTTGTACAAACATCTGTCATTCAATAAAATTGCAATCTCATTGGAATTTTGTAGTTGGTGCTGTTCCTGCACGGCTACTTTTTCATCATAGTGGTCAAGCCTTTCCCGAACTTGCCTTCTAGCAGGCTGCTCAGCA

Ace file of the UniGene sp_v1.1_unigene1263

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein	-	-	47%
FL-Next	sp=F-box/kelch-repeat protein At3g24760; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	f-box kelch repeat-containing f-box family protein	-	-	51%

Source	InterPros	Term	Type	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	51%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	51%
Blast2go	F-box domain, Skp2-like	IPR022364	-	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3EB08

Fln msg:

Fln protein: MAMEVDGFCEQHGGSLELDWNRLNSDITEVVLARLPVSSIVRSCIVCKHWYSLITQPSFTARLRVCKKPWFFLYGQNNIFLKNNQAFGFDPEANEWIRLPTSSFPQPCAEDSLAGSGGFLFATTGTACSRFCYAPVLKSSWKVTAPLRFSRRQPLVGVFKEGHYGFIVVGGVRFIGGLVDIEDRLAVEIYDSSKDSWELCAPLPADFRSGNSSQWLTSALLKGKFYVFGIYSGYISAFDLQHKAWGGVQIVRPPGIIFSFLLACQNNLILAGLRNGADGPMFNLWKVEEESMAFCEVGSMPQELLYSLFDSEEDDKFASLKCVGLGSLIYVFNEEHHKMYPACVCDISPKLDCTWTKVPPLPFPVNRFHKVISFCSTVALDSIL*

Protein Length: 386

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAACTCGTCAAGTCTGGAGATGAAGAAGATCGAGACAGGACAAATTGGGTGTCACTCTGTCATTTCCTCAATGTCTGCAACTTTTATCTCTCGCAAATAGAGGTATTCAATGCACAGCCTGCAGCCATCACTTTTCAGATTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTGCTGTGGCTCCAGACAAATTTGCAAACAGCATTATTCAGGTTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTTCTGTAGCTCCAGACCAAGCTGATCAACAGTGGGCTTTACATCTGGTACTGAGAGGTATCTTCTCTGTTAACCCCTATCACATAAAATTGTATTCTAAAAAACTTTATGAATGATTGTTATTTTTTCTTCTGCAACCTATAAAACCCTACGTAGGCCGTTCCCAAAATACCCAACTGGCTTGCGCCGATTTTTTCATCCCAAACACCCTTAGACCGCCTGCATTGAGTTGGGTTTCAGTCAAAATTGCCTC_-_ATGGCCATGGAAGTTGATGGGTTTTGCGAGCAACATGGGGGATCCCTTGAGTTAGATTGGAACCGCTTGAATTCTGATATCACCGAGGTTGTACTTGCTCGGCTGCCAGTCAGCTCCATTGTTCGCTCGTGTATCGTCTGCAAGCACTGGTATTCTCTCATAACCCAGCCCTCGTTTACAGCCAGGCTTAGGGTTTGCAAGAAACCCTGGTTTTTCCTGTATGGCCAAAACAACATTTTCTTGAAGAATAACCAGGCATTTGGCTTTGATCCAGAGGCCAATGAATGGATCCGTTTGCCTACTTCATCGTTTCCCCAGCCCTGTGCTGAGGATTCCTTGGCAGGTTCAGGAGGGTTTCTGTTTGCCACCACTGGGACTGCCTGTTCTAGGTTCTGTTATGCCCCGGTGTTGAAGAGTTCATGGAAGGTAACTGCCCCGCTAAGGTTCTCCAGGCGCCAGCCTCTGGTGGGAGTGTTTAAGGAGGGCCATTATGGGTTCATTGTAGTTGGGGGTGTCAGATTCATTGGGGGGCTGGTTGATATCGAGGATAGATTGGCTGTTGAAATCTACGACTCTAGCAAAGATTCATGGGAACTCTGTGCCCCTTTGCCAGCGGATTTCCGATCCGGTAACTCCTCGCAGTGGCTGACTTCTGCATTGCTGAAAGGGAAATTCTATGTCTTCGGGATCTATTCAGGGTATATTTCAGCGTTCGATCTGCAGCACAAGGCATGGGGTGGTGTCCAGATTGTTCGCCCCCCGGGGATTATATTCTCATTTCTTCTGGCTTGCCAGAACAACCTTATCTTGGCTGGTTTGCGCAATGGCGCCGATGGGCCGATGTTTAATCTCTGGAAAGTCGAGGAAGAATCGATGGCGTTCTGTGAGGTTGGTTCCATGCCCCAGGAGCTTCTGTATTCTTTGTTTGATAGTGAGGAGGATGATAAATTTGCAAGCTTAAAGTGTGTGGGGCTTGGGAGTCTCATTTATGTCTTCAATGAAGAACATCACAAGATGTATCCTGCTTGTGTCTGTGACATTTCTCCGAAATTGGATTGCACCTGGACAAAAGTTCCTCCGTTGCCTTTCCCTGTAAATAGGTTCCACAAGGTTATCAGCTTCTGTTCCACAGTTGCACTTGATAGCATTCTTTGA___TTCGAGATGTCACACCATTGGTTGCATGCCTTACATATTGTTGGTTCCAGTCATATGGAGTCATGTAAAACCCTTTATACATGCCTGGTGAGTGTGGCTAACATCAAGGATCGGTAGAAGAATTTGCAGTTCTATTTTATTGGCTTGCTTTACTTATCTACATTTGCGGAGCAACTTGCAAATCGGACAATGGGTTTTCGGGTGTGTACAGTGGCCAGCTATCATATGTAAAATTCCTGTTTGTTGCGGTTGTCTAAATTTATTTCTTGGGGTCTGTATAAAATGGGTGATGAGGGGCTGAGTTTATTAATCCGCTCCTCATTTACTCTTAGAAGTCTATGATTTGATTAGGGTTGGTTCTATGCTTCACAAAGAAGAATCCATGATAAGTTATTTTAATAGATTTTATAATTTTCAAGCAGGTGAACTTATAGCTTGTACAAACATCTGTCATTCAATAAAATTGCAATCTCATTGGAATTTTGTAGTTGGTGCTGTTCCTGCACGGCTACTTTTTCATCATAGTGGTCAAGCCTTTCCCGAACTTGCCTTCTAGCAGGCTGCTCAGCA

Fln Alignment:

sp_v1.1_unigene1263___WNRLNSDITEVVLARLPVSSIVRSCIVCKHWYSLITQPSFTARLRVCKKPWFFLYGQNNIFLKNNQAFGFDPEANEWIRLPTSSFPQPCAEDSLAGSGGFLFATTGTACSRFCYAPVLKSSWKVTAPLRFSRRQPLVGVFK--EGHYXXXXXXXXXXXXXXXDIEDRLAVEIYDSSKDSWELCAPLPADFRSGNSSQWLTSALLKGKFYVFGIYSGYISAFDLQHKAWGGVQIVRPPGIIFSFLLACQNNLILAGLRNGADGPMFNLWKVEEESMAFCEVGSMPQELLYSLFDS-EEDDKFASLKCVGLGSLIYVFNEEHHKMYPACVCDISPKLD--CTWTKVPPLPFPVNRFHKVISFCSTVALDSI
Q3EB08______________FNNLNIDVTESILYHLPIPSLVRFTLVSKQWRSLITSLPPSPSPSPSSPPWLFLFGIHNTSSFHNQSFAFDPLSNTWLRLPPSS----SSSDHLVGSNRFLFTTA----PRFSFSPILKPNWRFTSPVRFPRINPLLTVFTTLSNSSKLILVGGSSRIGGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTWSDVQTLKPPGLSFAYLNSCNGMLVLGGM----CGFSFNLWSIEEGSMEFSEIAVMPEDLLFGLVDSDDEDDKFRSLKCAGSGNLVYVFNDDCHKKFPACVCEIGGGENGICSWRRVPCLPSPVNKFHKVVSFCSTVSITDV

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
577	81		18		0.999994
730		16	83		0.994512
733		16		83	0.994512
734			16	83	0.994512
736			16	66	0.988813
737	16	83			0.994512
739		16		83	0.994512
747		83		16	0.994512
748	83		16		0.994512
749	83			16	0.994512
750	83	16			0.994512
753	83			16	0.994512
754	83	16			0.994512
755	16	83			0.994512
823		75		25	0.996473
946	87		12		0.992554
1158	14			85	0.993533
1246	90		10		0.90298
1247		90		10	0.90298
1248	90			10	0.90298
1249	90	10			0.90298
1251		10	90		0.90298
1252		90		10	0.90298
1254			10	90	0.90298
1274		20		80	0.995493
1338	14			85	0.993533
1341		85	14		0.993533
1522	90		10		0.90298
1523	90		10		0.90298
1574	20		80		1.0
1693	88		11		0.999937
1695		11		88	0.999937
1697			88	11	0.999937
1698			11	88	0.999937
1699	11			88	0.999937
1700		11	88		0.999937
1702	88			11	0.999937
1705		88	11		0.999937
1708			10	89	0.999919
1709	84			10	0.999846
2109	90		10		0.90298
2115			10	90	0.90298
2170		20	80		0.995493
2183	25		75		0.996473
2184	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain