SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1261

Length: 1285 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1261

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polcalcin Jun o, putative (EC:1.3.1.74); K13448 calcium-binding protein CML	-	-	9.0e-32	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	polcalcin jun o 2	-	-	2.52234e-44	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	2.52234e-44	63%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.52234e-44	63%
Blast2go	nucleus	GO:0005634	Cellular Component	2.52234e-44	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	2.52234e-44	63%
Blast2go	EF-hand-like domain	IPR011992	-	2.52234e-44	63%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	2.52234e-44	63%
Blast2go	EF-hand	IPR018248	-	2.52234e-44	63%
Blast2go	EF-HAND 2	IPR018249	-	2.52234e-44	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNH6

Fln msg: atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 216 - 244

Fln protein: TEPSHTQSRFWSCILPPISRSVSSTARSKAYQSPKRSSSRYGKRSLRRERNDDEPVEPCSPTPSGTRYGSAVELEEVFKKFDTNGDGKLSLSELGTLMRSLGGNPTEEELRLIVEAADVGGDPYIDLTEFVLLNTEGVDTPRRLEDLKCAFRMFDRDGNGTISPLELLHVLTSLREPCTLSDCEAMIRTFDSNGDGLINFDEFTAMMNASDSSLK*

Protein Length: 217

Fln nts: GACTGAACCATCGCATACACAATCACGATTTTGGTCCTGTATATTGCCTCCCATATCCCGATCAGTGTCCTCCACGGCCAGATCAAAGGCTTACCAATCCCCGAAAAGGTCATCCAGTCGATATGGGAAGAGGTCGCTGAGAAGGGAAAGGAACGATGATGAGCCCGTGGAACCGTGCTCTCCTACTCCTTCCGGCACGCGGTACGGTAGTGCTGTGGAGCTGGAGGAAGTTTTCAAGAAATTCGACACTAATGGCGATGGTAAATTATCATTATCGGAGCTGGGCACCCTTATGCGATCGCTCGGAGGGAACCCAACGGAGGAAGAGCTTCGGCTGATCGTTGAGGCGGCGGATGTCGGCGGAGATCCGTACATCGATCTGACAGAGTTCGTACTTCTCAACACAGAGGGTGTGGACACCCCACGCAGACTTGAAGACCTGAAATGCGCCTTCAGGATGTTTGACAGAGATGGGAATGGAACTATCTCTCCCCTTGAACTCCTCCATGTTTTAACCAGTCTGAGAGAGCCTTGCACCCTGAGTGACTGCGAGGCGATGATCAGAACATTCGATTCGAATGGCGATGGCCTCATCAATTTCGACGAGTTCACAGCAATGATGAACGCATCTGACAGTTCATTGAAATAG___TATAAACAGATTTCAATAAGAAGCTCTTGGTAGAGTGGTGGCTTTGCATACCAGTTTCTTGGTTGTTCTTGTTTATGGTATCAGAATGGGATTGAGCTTAACTCTATCATGGGAGTGTTCAAGACTAGAGTGTTTTGGAAAGCTAATCCTCTGTACAGTAGAGCATGGCATATAGGGTTTCAGTGTGCTATGCTTGATTTGTTGTAAGCTGTGCCATGTAAATGGCAGAAATATGTTCATGTGTGCAGAATAAAACGCTGTAAATATGATTTGTGAATCTTTAATGTTGTAGATCTGTGAAATTTCTGAAAAGAGGATAGAAATTCACAGATCTCCCTAACCTGTGGGAACTTTGAATCTGTTGTGGAAGGCTGTATTACAGCTGATGTTGTTGTCACAAGTGTTTCCCTGAGTGCTCAATGAATTGTACATAGATATTTGTTGTGTGTAGAATTGATGATCTGCTGTTCCATATATGAGGTGTCAATCTTCTCAGAAGTGCAGGCACGCTGCAGAGCCAACAGAATTTCTTTGGAGAAGCGGTATTTGTTCACTGTATGAGTACCACATACAGCTGAGTGGGACTGTTGCAGCACGACAGATGAAGATTATAGCCAACGACCAAGCGCGGAGTAG

Fln Alignment:

sp_v1.1_unigene1261___SRSVSS-TARSKAYQSPKRSSSRYGKRSLRRERND---DEPVEPCSP--------TPSGTRYGSAVELEEVFKKFDTNGDGKLSLSELGTLMRSLGGNPTEEELRLIVEAADVGGDPYIDLTEFVLLNTEG-VDTPRRLEDLKCAFRMFDRDGNGTISPLELLHVLTSLREPCTLSDCEAMIRTFDSNGDGLINFDEFTAMM-NASDSS
B8LNH6______________SRPVSDLSSRREAAESDKSPSNRRRKLSLSG-RNDVVSDGKIDELGVGVGVDVGVDASRSAVPSAAELEDVFKKFDANGDGRISRSELSDLMKSLGGNVTEEEVGAMVSEADLDGDGYIDLSSFVALNTDQTVSSSRRVQDLKDAFNMFDRDGNGSISPSELHHVLTSLQEHCTIGDCHNMIKDVDSNGDGQVSFDEFMAMMTNTSHNS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
659			66	33	1.0
1132		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain