SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1260

Length: 1800 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1260 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJA4_MALDO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	69%
Blast2go	nac domain ipr003441	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	81%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	81%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	81%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5C5Q0

Fln msg: Overlapping hits, possible frame ERROR between 584 and 461, your sequence is longer than subject: 285 - 226

Fln protein: MELPPGFRFHPTDEELVVHYLKKKAMSSPLPVSIITELDLYKFDPWDLPGKTTYGEHEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILTSSGRQKIGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLRLDDWVLCRIYKKSRHSPRMEESEKDESHIEEGSSSLLDIHHDQHLQLPKCGPFSSLLASAVDVLDESLIDVESPQETGYQRNPLFPSNSRNDNISNNNNGDNGPANFNTLHPQAIHEEKLLGTIGDFRQIYQSRFP*

Protein Length: 286

Fln nts: GGTTGCGTCTCGGAGTAGGACTCTTTGGCAAAGCAGGTGACCTGCTGACGAAGTATAACCGTCGCCCAAGACGCTTAAATTCGGATGTTTTGAGCGCCTTCTAGGTTCTTTCTGGGGACGCTCTAGGGTGGGATTTTGTGATTGGTGTC_-_ATGGAATTGCCTCCGGGATTCAGATTTCATCCTACGGACGAGGAGCTGGTGGTTCATTACTTGAAGAAGAAGGCTATGTCTAGTCCGCTTCCTGTGTCGATTATTACAGAACTTGATCTGTACAAGTTTGATCCGTGGGATTTGCCTGGAAAGACAACATATGGGGAGCATGAGTGGTATTTTTTCAGTCCAAGAGATCGCAAGTACCCTAATGGTGCTCGGCCAAATAGAGCTGCAGCTTCTGGATATTGGAAAGCTACTGGGACTGACAAGCCAATTCTGACATCTTCTGGTAGACAAAAGATTGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGCGTCTCGATGATTGGGTGCTGTGTCGTATTTACAAAAAAAGCAGACACTCTCCAAGGATGGAAGAAAGTGAGAAAGATGAATCACACATTGAAGAAGGTTCATCGTCCTTGCTCGACATTCATCATGATCAGCATCTGCAGCTTCCAAAATGTGGTCCTTTTAGCAGCCTGCTGGCTTCGGCTGTGGATGTATTGGATGAAAGCTTGATTGATGTTGAATCACCTCAAGAGACAGGATACCAGAGGAATCCCCTCTTCCCTTCCAATAGCAGAAATGATAATATCAGTAACAATAATAACGGTGATAATGGTCCAGCCAACTTTAACACATTGCATCCTCAAGCCATCCATGAAGAGAAATTACTTGGGACAATAGGAGATTTTCGACAAATTTATCAATCTCGTTTTCCATAA___AAATATCTAGAGCTATTCACATCCTGCCCTTCTCAGTTCTGGTTCTCAGAAGTGTGAGAAAACCGCATTCATCACATGAACTGGTACACTGTGCTTCTATCTTTTCTGTTATACTAGTAACTCCTATTGTTTCACCATGCTGACAGAAATCATCATTTTTTGTGCAAATTAGAGGGGGCAGCAGATGGCCTGTACTCAGGCAAAACCAACACTGCAAAATTACATGGATTTTGTATAAGATATCAGAAGACCTATACAATCTCATAGAACATGCATGTACAAAAAGTCAAGTGCACTATAAATACAAGCCCCTCTCCAATCAGAGACAGCAGCAGCTCAGTATCAACTTTGTGGGAAAATTATTTACATATGCCAGCTCTTAGAAGTTGTATATAGTGAATCATTGTACATCTAGCCATAGGGAGAAGCAACAGATCATATGGTTGGTGGGTTAACCAGATCAGAGATTTTCTTAAATAAAAGTCCAACAGCATCCAAATATGAAATGGTTTTCGAACATGGAATAAAGACAAAAGCCAAGGCAGTTGAAACGATTTCAGATGAAATTAGTGCATTGTAAGAGAATTCTATGTACATTCTAGGAGGGAAAATGTAGATGGATTAACTCTTAACATATCAATTACGAAGGGGCCGGCTAACTTCACACAGAAGTGTAGAGTTGCTAGGGTAATAATTTAGCTGCTTAATGTTGATTTGTGTGAACTCCTATTGGGCGTTCAGTTAATATTGAATTTAGAAGGAGACTATTGAATTGAAGGGGATGTTGATTTACGACA

Fln Alignment:

sp_v1.1_unigene1260___ELPPGFRFHPTDEELVVHYLKKKAMSSPLPVSIITELDLYKFDPWDLPGKTTYGEHEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILTSSGRQKIGVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLASRKGSLRLDDWVLCRIYKKS
A5C5Q0______________QLPPGFRFHPTDEELVVHYLKRKAASVPLPVTIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSNGSQKVGVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMGNKKGSLRLDDWVLCRIYKKN

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
657			33	66	0.997452
730	25			75	0.996473
845		16		83	0.994512
874	20			80	0.999996
903		20	80		0.999996
908	80		20		0.999996
918	20	80			0.999996
919		80		20	0.999996
937			12	87	0.992554
940			12	87	0.992554
941	75		25		1.0
945			12	87	0.992554
946		12		87	0.992554
949	12			87	0.992554
951		85	14		0.993533
953	85	14			0.993533
954	14			85	0.993533
955		14		85	0.993533
959	85	14			0.993533
1314	16		83		0.994512
1319	16	83			0.994512
1321	16			83	0.994512
1323		83		16	0.994512
1325	16			83	0.994512
1326	16	83			0.994512
1327			16	83	0.994512
1328	83		16		0.994512
1331	80	20			0.995493
1333	80	20			0.995493
1334	80		20		0.995493
1338		80	20		0.995493
1339	75	25			0.996473
1340		25	75		0.996473
1341	75	25			0.996473
1342	25		75		0.996473
1343	25	75			0.996473
1679	16	83			0.994512
1680	16	16			0.988813
1682		83	16		0.994512
1685		83	16		0.994512
1762		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain