SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1247

Length: 1094 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1247 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis RepID=B9RFI4_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pseudouridine synthase family protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	Pseudouridine synthase, RsuA and RluB/C/D/E/F	IPR006145	-	70%
Blast2go	Pseudouridine synthase, RluC/RluD, conserved site	IPR006224	-	70%
Blast2go	Pseudouridine synthase, catalytic domain	IPR020103	-	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRV2

Fln msg: Overlapping hits, possible frame ERROR between 483 and 482, and overlapping frame ERROR between 556 and 555, your sequence is shorter than subject: 339 - 358

Fln protein: YEDFPKPLSQAPPELSRQVEYDRAMRAEAAVKAGPALSRTEFIYEDEWMIAVNKPSGVYCEHVLSSIPGLLASSPSSAGAVNDVHPLELHLANRLDRDTSGVMVITKLHKIAGQLVKAFTDRKVRKTYLALCIGPAPKWNNIYIESGHGRSKFGAWRVYSxxTDVGRILPGGTVVREMATHFKVxxxVNANHRMHHDSVDEAQISSQGIAFDLEEDRFVTVGDNGSMDSIEKLVVTEQNFKVAGLDCDIVSSAKIRKNDEVLIRASPLSGRTHQIRLHCQYMGLPIRGDVKYEGPHTWKGITYANHALHAESLCFEHPVTGNMVKLHAPLPQWVMEAY*

Protein Length: 340

Fln nts: TATGAAGATTTTCCCAAGCCATTGTCACAGGCTCCTCCCGAACTTTCGAGGCAGGTTGAATACGACAGGGCAATGCGCGCAGAAGCGGCTGTTAAAGCAGGCCCTGCTCTATCGAGAACGGAATTCATATATGAAGATGAATGGATGATCGCGGTCAACAAACCCTCAGGTGTTTACTGTGAGCATGTTTTATCGTCAATTCCAGGGCTGCTGGCTTCTTCCCCGAGCTCTGCAGGTGCTGTAAATGATGTTCATCCACTGGAATTGCATCTTGCCAACCGTCTTGACCGAGACACTAGTGGAGTAATGGTCATTACCAAGTTGCATAAAATAGCAGGCCAGCTTGTGAAGGCATTTACAGATCGGAAGGTGAGAAAAACTTATCTTGCCCTGTGTATTGGACCTGCTCCAAAGTGGAACAATATCTATATCGAGTCTGGGCATGGGAGATCGAAGTTTGGTGCATGGCGTGTGTATTCTxxxxxxACAGATGTTGGAAGGATTCTTCCAGGTGGCACTGTTGTTAGGGAGATGGCAACTCATTTTAAGGTCTxxxxxxCTGTAAACGCGAACCATAGAATGCACCATGACAGTGTTGATGAGGCACAAATTTCTTCTCAAGGCATTGCTTTTGACCTTGAAGAAGACAGATTTGTTACAGTTGGAGATAATGGCTCTATGGATAGTATAGAGAAATTGGTGGTCACAGAACAAAATTTCAAGGTGGCTGGACTAGACTGTGACATTGTTAGCTCAGCAAAAATCAGAAAGAATGATGAAGTGCTAATAAGAGCTTCTCCTTTAAGTGGAAGAACACATCAAATTCGTTTGCATTGCCAATACATGGGATTGCCTATTAGAGGGGATGTGAAATATGAAGGGCCACATACCTGGAAAGGTATAACCTATGCCAATCATGCTCTGCATGCAGAGAGTCTCTGCTTTGAGCATCCTGTCACAGGTAATATGGTTAAATTGCATGCTCCTCTTCCCCAATGGGTAATGGAAGCTTACTGATACTGTCCTAGGTTGTTCAATGTTGCTTCCCCTTAATTCCTGATCGTTCAATTTATTTATTTTCCTTTATTCTTATGGTTG

Fln Alignment:

sp_v1.1_unigene1247___EDFPKPLSQAPPELSRQVEYDRAMRAEAAVKAGPALSRTEFIYEDEWMIAVNKPSGVYCEHVXXXXXXXXXXXXXXXXAVNDVHPLELHLANRLDRDTSGVMVITKLHKIAGQLVKAFTDRKVRKTYLALCIGPAPKWNNIYIESGHGRSKFGAWRVYSxTDVGRILPGGTVVREMATHFKVLxVNANHRMHHDSVDEAQISSQGIAFDLEEDRFVTVGDNGSMDSIEKLVVTEQNFKVAGLDCDIVSSAKIRKNDEVLIRASPLSGRTHQIRLHCQYMGLPIRGDVKYEGPHTWKGITYANHALHAESLCFEHPVTGNMVKLHAPLPQWVMEAY
B8LRV2______________EDFPKPLSQPPPELSRQVEYDRAMRAEAAVKAGPALSRNEFIYEDEWMIAVNKPSGVYCEHVLSSIPELLASSPSSAGAANDVNPLELHLANRLDRDTSGVMVITKLHKIAGQLVKAFTDRKVRKTYLALCIGPAPKWNNIYIESGHGRSKFGAWRVYSxTDVGRILPGGTVVREMATHLKVLxVNANHRMHRDSVDKAQNSSQGIAFDLKEDRFATVGDNGSTDSIEKVVVTEQNSKAPGQDRDIVSSPNIRKNDEVLIRASPLSGRTHQIRLHCQYMGLPIRGDVKYEGPHIWKGITYANHALHAESLCFEHPVTNNMVKFHAPLPQWVMEAY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
818	33	66			0.997452
963		10		90	0.90298
981			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain