SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1241

Length: 2031 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1241
GAGTGATTGCCACGGCACAGCAGATCGTTAGAAGCTTGGCAACGACAGAAACTATGACCAAAGATATGTTGAGAATTCTCTCAAATTTCGACAATCGATTTCTAGCATGACGGAACGGCTGGGAACTGATACTGTCAGTGATATTGAAGAGAGGCTTGCTTCTGCAGAAGAAGTGGTTTTGCGGTGGGATGGGAATTGCTCTGAAGCTGCAAGAGAATCTATGATATGGGAAGGGCCGCCAGATGAAGCTGCCTCTTACTTACAGGCCGTTGACGAAGTGCAGCGATTGACGGAAAGTCTGGAAAGCATATCGTTGACGGAAAATGATAATGATGAAAGCAATAATAATGATTTTCATGGAAGCGAGCTACTGAACCGTGCCCAGAATGTTCTGCAGATTGCCATGGCTAGGTTAGAAGAGGAATTCCAAAATATTTTGGTTCAGCAGGGTGAAATTTTTGAACCGGAGCGGCTTTACCAGATGATACATGGCCCGGTTTCTAGGGTTTCATTCTGTTCTTCTCGTCACGAAGATATGCCAGACGTTGCATCCATTAGCTCTGGCGAAGGAGAAGGCGATCATGATGAAGATGCCCAAAATCTTCTTGGTAATACCGATAACAGCGGAGACCTCATCATTGATTTAATTCGGCCTGAGGTAATTCCCGACCTCAAAGACATTGCCGAACGTATGGTTGCTTCCAAGTATGAACGAGAGTGCTGTCAGGTTTACAGTACTGTTCGCAGAGAAATCCTCGATGAGGGCTTGCGTCGTCTCGGAATAGAGAAACTCAGTATTGAAGAAATTCAAAAGATGGATTGGGAAACGTTGGAAGGGAAGATCAAGAAATGGAACCAGGCTGTAAAGATTGCTGTCCAGGTTCTTCTTGGCAGTGAGAAACGCCTTTGCGTTCAGATCTTTGAGCAACTAGGTTCTATTCAAGACACTTGCTTTGTTGAGACTGCAAAGGGTGCTATTATGCAGCTTCTAAATTTTGCTGAGGCGATTGCAATAAGTCGCCGGTCTCCGGAAAGGCTCTTTAGGATTCTGGACATGTATGAGAGCCTCTCGGATCTTCTTCCAGCCATTAAGTCAATTTTTTCGGACGAGTCCTGTGCCTGCATCAGAGCAGAGGCCGATGGAATTTTGACACGATTAGGAGAGGCTGCGAAGGGGACATTTGTGAATTTGAAAATGCTATTCAGAGGGACACTTCCAAGACTCCAATTCCTGGAGGTGCAATTCATCCTTTGACTCGTTATGTCATGAATTATATAAAGTTCCTTTTTGATTATACAGATATTTTCAAACAGCTTATAGATGAGAAAAAGGAAGCTATTCCAAGGCAGCTTTCAGATGGGTTCATAGAATTTGCTGAAGAAGATCGCCAAGGCGACCTTTCAAACCCAACTCCAAACCAAACTCCATTGGCTCGTCGTCTTTTATCCATTACATCACTGCTCGAGTCGAATCTTGAGGGAAAATCCAGACTCTACAAAGATATTGCTTTGTCTCATCTTTTCATGATGAATAATATTCGTTACATCGTTCAGAAAGTTAAAGGCTCAGAGCTCAGGACTCTTCTTGGTGATGATTGGATTAGAAGGCGCAGTGGGCAGGTACGTCAATATGCTACAAACTATCAAAGATCTGCTTGGAGAAAGGTCTTATCTTGCTTAAGAGATGAAGGAATCTATATTGGTGGAAGCTCTTCCTCCAAGGTTTCAAAGGAGGCTCTCAAGGATAGGTTCAAGAGCTTCAATGCTATGTTTGAAGAGGTATACAGGAATCAGACAGCTTGGTTTGTTCCAGATCCTCAGCTCCGTGTAGAGCTGCGCATCTCTATTGAGGAGAAATTGCTTCCAGCATACCGAGCCTTTTTGGGGAGATTCGGTATGCACTTGGAAGGTGTGAGGCATGCAGAAAGGTACATTAAATACTCACCGGAGGACTTAGAGAATTTTATACTGGATTTGTTTGAAGGCTCACCAGGATCCATGAATAATCAGCGCAGGAGGACGGGTACCTAA

Ace file of the UniGene sp_v1.1_unigene1241

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATEXO70F1 (exocyst subunit EXO70 family protein F1); protein binding; K07195 exocyst complex component 7	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	protein binding	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exo70 exocyst complex subunit	IPR004140	-	0.0	67%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF7

Fln msg: Separated hits, possible frame ERROR between 107 and 1174, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is longer than subject: 677 - 627

Fln protein: VIATAQQIVRSLATTETMTKDMLRILSNFDNRFLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDICEFENAIQRDTSKTPIPGGAIHPLTRYVMNYIKFLFDYTDIFKQLIDEKKEAIPRQLSDGFIEFAEEDRQGDLSNPTPNQTPLARRLLSITSLLESNLEGKSRLYKDIALSHLFMMNNIRYIVQKVKGSELRTLLGDDWIRRRSGQVRQYATNYQRSAWRKVLSCLRDEGIYIGGSSSSKVSKEALKDRFKSFNAMFEEVYRNQTAWFVPDPQLRVELRISIEEKLLPAYRAFLGRFGMHLEGVRHAERYIKYSPEDLENFILDLFEGSPGSMNNQRRRTGT*

Protein Length: 678

Fln nts: GAGTGATTGCCACGGCACAGCAGATCGTTAGAAGCTTGGCAACGACAGAAACTATGACCAAAGATATGTTGAGAATTCTCTCAAATTTCGACAATCGATTTCTAGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGGGACATTTGTGAATTTGAAAATGCTATTCAGAGGGACACTTCCAAGACTCCAATTCCTGGAGGTGCAATTCATCCTTTGACTCGTTATGTCATGAATTATATAAAGTTCCTTTTTGATTATACAGATATTTTCAAACAGCTTATAGATGAGAAAAAGGAAGCTATTCCAAGGCAGCTTTCAGATGGGTTCATAGAATTTGCTGAAGAAGATCGCCAAGGCGACCTTTCAAACCCAACTCCAAACCAAACTCCATTGGCTCGTCGTCTTTTATCCATTACATCACTGCTCGAGTCGAATCTTGAGGGAAAATCCAGACTCTACAAAGATATTGCTTTGTCTCATCTTTTCATGATGAATAATATTCGTTACATCGTTCAGAAAGTTAAAGGCTCAGAGCTCAGGACTCTTCTTGGTGATGATTGGATTAGAAGGCGCAGTGGGCAGGTACGTCAATATGCTACAAACTATCAAAGATCTGCTTGGAGAAAGGTCTTATCTTGCTTAAGAGATGAAGGAATCTATATTGGTGGAAGCTCTTCCTCCAAGGTTTCAAAGGAGGCTCTCAAGGATAGGTTCAAGAGCTTCAATGCTATGTTTGAAGAGGTATACAGGAATCAGACAGCTTGGTTTGTTCCAGATCCTCAGCTCCGTGTAGAGCTGCGCATCTCTATTGAGGAGAAATTGCTTCCAGCATACCGAGCCTTTTTGGGGAGATTCGGTATGCACTTGGAAGGTGTGAGGCATGCAGAAAGGTACATTAAATACTCACCGGAGGACTTAGAGAATTTTATACTGGATTTGTTTGAAGGCTCACCAGGATCCATGAATAATCAGCGCAGGAGGACGGGTACCTAA

Fln Alignment:

sp_v1.1_unigene1241___VIATAQQIVRSLATTETMTKDMLRILSNFDNRFLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDICEFENAIQRDTSKTPIPGGAIHPLTRYVMNYIKFLFDYTDIFKQLIDEKKEAIPRQLSDGFIEFAEEDRQGDLSNPTPNQTPLARRLLSITSLLESNLEGKSRLYKDIALSHLFMMNNIRYIVQKVKGSELRTLLGDDWIRRRSGQVRQYATNYQRSAWRKVLSCLRDEGIYIGGSSSSKVSKEALKDRFKSFNAMFEEVYRNQTAWFVPDPQLRVELRISIEEKLLPAYRAFLGRFGMHLEGVRHAERYIKYSPEDLENFILDLFEGS
A9NUF7______________VVAMVHHIVRSLSTSENMTRDMLTMLSTFDNRLSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIMVVFENAIKAENSKTSVPGGTIDPLTGYVMKYLSFLSDY-----------KETLTNMMANTPI-----DGHDELGSQV---SALSVRLGWTITNLQCNLDLKSNLYKDVALSNLFLMNNLHYIVKKVKGSKLLGLLGYGWLRKNQGEVRQYAENYERAAWMQALNCLSDERIHVNEGISSGVSQQALKDRLKGFNCAIEEVLKKHSGWMVPDVQLREELSISVAEKMIPAYRSFLGRLRKYSESGRHSQINIKYTAEDLEARLLDLFHGN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1899			26	73	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain