SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1233

Length: 2630 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1233
CGTCGTGACCTTGGCTGTCACTCAAGATATCCGGTGGTATCAAGATAGCCACACAGTTTGCCTTTTAGGGTTCTGTTCGCCTACATATAAGATTGTCGGCAAATTCCGCTGAATTGTCAATGAAATCTGCGTGGCAACGAGCTGGAGATTGAATTTGCCAGAGAATTCTGGAATAGCGTGAAATCGACTCCACCTAATGAATCCCTTGTGAATATATCACGTCGATGACCTTGGCTGTCACTCAACTTCCCCATCAATCCTAATGGAAGAATTGTAGACCTACGCCTCCGTAAGCGGAGGTCATTTCTGATCCACACGGCCATTCCTATGGCCACAATCATCCTTCAAGCAAACAAAGGATAGACAACTCCAAGACCACAATTGTCACATCTTCAAAGCAGATTTGATCCAGTATCACCATTGCCACACCTTCAACTGAATATTTTTCCTCATTATCCATTCGATTATTGCCCCTAATTACGGATTTGATCAAGGAATCCCGCCCCAGGGCTTCAAAAATCGTTCCTATTTATTCCCAAGGGCGTCATGTTGCTTTCTATTCCTTTTTGCATCAGGAGGGGTTGTACTTCTTAGCCTTAGGCCTTTTGTAAGGCCCTTCAGCGCAGGCACTTAGTGATAATCTTCTTGAGTGTTGTTGTTTTGGCTAGATAGTACATAATTCGATCAAAATAATCTCTTTTGTGTGGCTATTCTTGACAGGATAGCTGAATTCAGGCCCATTTGAATTGCAGTTCCTCGTTGTTTTTAGGTTATCTTGATCGCTATTGTTAGTATTTCTCTCTAATTTCAGTGCTATAGCCTCTTACAATGGCTTCTTTAACCACCATAACAGCGCAGAGAATAACAAAACAGACAATAGATTTCAATAGCCAGACCAATAGGGCCGTGTACTCTGTACAAGGGCTCTCAAATTCTTCTCTGAACGTCTTGAAACCGAACAGGCCAAAGCATGCGGGCAGAAAATTTCAATTGGGTATAAGGGGTCCAGCTTTGAATTGTAAGAGAAATTGGGAAACAAGATCATTAGCAGATGACCTAGATGTTATTCCTGTAAAAAGCAATGATACCGTGGACCAGCAAGAAGGTGTTGGGTTCATGTCTCAGGAAATGGAGAAGCGGCCCTCAAGCCAGGTTGGAGGATTCAACGCAGACGGAGGGTTTTCATTAGAAACTGCTGGTGCCCAAATGCAGATTGGCCCGGGTTCTCCAGTTTCTACGGCGGAAAAAACGGAGGAAATGACGCATATTGACAGGGCTATTAATGCCGCCGTTGTATTTGCTGCTGGATCTTTTCTTGTCACCAAGATGCTCACCATAGACCATGATTACTGGCATGGATGGACCCTCTATGAGATTGTCAGATATGCACCTGTGCACAATTGGACTGCTTATGAAGAAGCCTTGAAAACCAATCCTGTGTTGGCAAAGATGGTGATAAGTGGGGTTGTTTATTCCTTGGGAGATTGGATTGCTCAGTGCTATGAAGGCAAGCAGCTTTTTGAATTCAATCGAATCCGGATGATGAGATCTGGCCTTGTCGGGTTTTCCCTTCATGGCTCTTTGTCACATTATTATTACCATCTTTGTGAGGCCCTCTTTCCTTTCCAGGGTTGGTGGGTAGTTCCCGCAAAAGTGGCATTTGACCAAACTATATGGGCTGCAGTCTGGAACAGTATTTATTTTACAGTTTTGGGTTTGCTGCGGTTTGAGTCGCCAGCCAATATTTTTGGTGAATTGAAAGCTACCTTTTGGCCGCTTTTGACAGCAGGTTGGAAGTTGTGGCCTTTTGCACACTTAATAACGTATGGTGTTGTACCTGTGGAACAAAGGTTACTGTGGGTGGATTGTGTTGAACTTATCTGGGTTACCATCCTTTCAACTTATTCTAATGAGAAATCAGAAGCCAGAAGTCTAGAAGCCTCGTCTGAAGGGAAACCTGACTCTGTTTTGAAATCTTCGTCAGATGTCTCTCAGGAACAGAGATAATGATGCCATTGTCGGAGACAGCAGTCGATGTAAATTATGCAGAACTTAGGAGGAGAGTTCCATGTGGAATGTGTGCAATTCAGACGCCTTCTAAATGAACGGCATAAATGTGGATGGTATTGCATATATTATACTTGAAAGGGTATCAGTCCTGTCACAGTATTTTCCTTGTACCATAACCGTTGGATTCTCTTTGCAGAGTTCCCGAACAAACCTAATTTTGTAGTTACGCTGCTGATAAAGATAACCAATTTATTTTCAAGATCTCAGACTATCATCTTTCATGTTGGTATTATGCTTGGTTGAATGTTGCTTAAATCTTGTATACATCAATTTTGTGGATACGCTCACACTCCCACTTTTCGACACTTATCAGCTAGATAATTTCTTACATATCAGTTGAGTGCAAAAAGACCTGGAGGCTGGAACGGGAATCTTGAGAAGATCAGTGAGATAATAGTCGTCGAAGGTAGATGGTAATTCCTGCCTTTAGGAGTCCTCTTAAAGATGAGGAATAAAGAAATAGAACTTGTCAGAAGTTATTAAAGTTTGAAATACGATCCCCTAGGGTTACAGATTCAGTAGATGTGAGGCAAGTATTTCGTCTAATGTTCTCATTAATA

Ace file of the UniGene sp_v1.1_unigene1233

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peroxisomal membrane protein-related	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	peroxisomal membrane	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mpv17/PMP22	IPR007248	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNA6

Fln msg: your sequence is longer than subject: 393 - 294

Fln protein: MASLTTITAQRITKQTIDFNSQTNRAVYSVQGLSNSSLNVLKPNRPKHAGRKFQLGIRGPALNCKRNWETRSLADDLDVIPVKSNDTVDQQEGVGFMSQEMEKRPSSQVGGFNADGGFSLETAGAQMQIGPGSPVSTAEKTEEMTHIDRAINAAVVFAAGSFLVTKMLTIDHDYWHGWTLYEIVRYAPVHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCYEGKQLFEFNRIRMMRSGLVGFSLHGSLSHYYYHLCEALFPFQGWWVVPAKVAFDQTIWAAVWNSIYFTVLGLLRFESPANIFGELKATFWPLLTAGWKLWPFAHLITYGVVPVEQRLLWVDCVELIWVTILSTYSNEKSEARSLEASSEGKPDSVLKSSSDVSQEQR*

Protein Length: 394

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATATCCGGTGGTATCAAGATAGCCACACAGTTTGCCTTTTAGGGTTCTGTTCGCCTACATATAAGATTGTCGGCAAATTCCGCTGAATTGTCAATGAAATCTGCGTGGCAACGAGCTGGAGATTGAATTTGCCAGAGAATTCTGGAATAGCGTGAAATCGACTCCACCTAATGAATCCCTTGTGAATATATCACGTCGATGACCTTGGCTGTCACTCAACTTCCCCATCAATCCTAATGGAAGAATTGTAGACCTACGCCTCCGTAAGCGGAGGTCATTTCTGATCCACACGGCCATTCCTATGGCCACAATCATCCTTCAAGCAAACAAAGGATAGACAACTCCAAGACCACAATTGTCACATCTTCAAAGCAGATTTGATCCAGTATCACCATTGCCACACCTTCAACTGAATATTTTTCCTCATTATCCATTCGATTATTGCCCCTAATTACGGATTTGATCAAGGAATCCCGCCCCAGGGCTTCAAAAATCGTTCCTATTTATTCCCAAGGGCGTCATGTTGCTTTCTATTCCTTTTTGCATCAGGAGGGGTTGTACTTCTTAGCCTTAGGCCTTTTGTAAGGCCCTTCAGCGCAGGCACTTAGTGATAATCTTCTTGAGTGTTGTTGTTTTGGCTAGATAGTACATAATTCGATCAAAATAATCTCTTTTGTGTGGCTATTCTTGACAGGATAGCTGAATTCAGGCCCATTTGAATTGCAGTTCCTCGTTGTTTTTAGGTTATCTTGATCGCTATTGTTAGTATTTCTCTCTAATTTCAGTGCTATAGCCTCTTACA_-_ATGGCTTCTTTAACCACCATAACAGCGCAGAGAATAACAAAACAGACAATAGATTTCAATAGCCAGACCAATAGGGCCGTGTACTCTGTACAAGGGCTCTCAAATTCTTCTCTGAACGTCTTGAAACCGAACAGGCCAAAGCATGCGGGCAGAAAATTTCAATTGGGTATAAGGGGTCCAGCTTTGAATTGTAAGAGAAATTGGGAAACAAGATCATTAGCAGATGACCTAGATGTTATTCCTGTAAAAAGCAATGATACCGTGGACCAGCAAGAAGGTGTTGGGTTCATGTCTCAGGAAATGGAGAAGCGGCCCTCAAGCCAGGTTGGAGGATTCAACGCAGACGGAGGGTTTTCATTAGAAACTGCTGGTGCCCAAATGCAGATTGGCCCGGGTTCTCCAGTTTCTACGGCGGAAAAAACGGAGGAAATGACGCATATTGACAGGGCTATTAATGCCGCCGTTGTATTTGCTGCTGGATCTTTTCTTGTCACCAAGATGCTCACCATAGACCATGATTACTGGCATGGATGGACCCTCTATGAGATTGTCAGATATGCACCTGTGCACAATTGGACTGCTTATGAAGAAGCCTTGAAAACCAATCCTGTGTTGGCAAAGATGGTGATAAGTGGGGTTGTTTATTCCTTGGGAGATTGGATTGCTCAGTGCTATGAAGGCAAGCAGCTTTTTGAATTCAATCGAATCCGGATGATGAGATCTGGCCTTGTCGGGTTTTCCCTTCATGGCTCTTTGTCACATTATTATTACCATCTTTGTGAGGCCCTCTTTCCTTTCCAGGGTTGGTGGGTAGTTCCCGCAAAAGTGGCATTTGACCAAACTATATGGGCTGCAGTCTGGAACAGTATTTATTTTACAGTTTTGGGTTTGCTGCGGTTTGAGTCGCCAGCCAATATTTTTGGTGAATTGAAAGCTACCTTTTGGCCGCTTTTGACAGCAGGTTGGAAGTTGTGGCCTTTTGCACACTTAATAACGTATGGTGTTGTACCTGTGGAACAAAGGTTACTGTGGGTGGATTGTGTTGAACTTATCTGGGTTACCATCCTTTCAACTTATTCTAATGAGAAATCAGAAGCCAGAAGTCTAGAAGCCTCGTCTGAAGGGAAACCTGACTCTGTTTTGAAATCTTCGTCAGATGTCTCTCAGGAACAGAGATAA___TGATGCCATTGTCGGAGACAGCAGTCGATGTAAATTATGCAGAACTTAGGAGGAGAGTTCCATGTGGAATGTGTGCAATTCAGACGCCTTCTAAATGAACGGCATAAATGTGGATGGTATTGCATATATTATACTTGAAAGGGTATCAGTCCTGTCACAGTATTTTCCTTGTACCATAACCGTTGGATTCTCTTTGCAGAGTTCCCGAACAAACCTAATTTTGTAGTTACGCTGCTGATAAAGATAACCAATTTATTTTCAAGATCTCAGACTATCATCTTTCATGTTGGTATTATGCTTGGTTGAATGTTGCTTAAATCTTGTATACATCAATTTTGTGGATACGCTCACACTCCCACTTTTCGACACTTATCAGCTAGATAATTTCTTACATATCAGTTGAGTGCAAAAAGACCTGGAGGCTGGAACGGGAATCTTGAGAAGATCAGTGAGATAATAGTCGTCGAAGGTAGATGGTAATTCCTGCCTTTAGGAGTCCTCTTAAAGATGAGGAATAAAGAAATAGAACTTGTCAGAAGTTATTAAAGTTTGAAATACGATCCCCTAGGGTTACAGATTCAGTAGATGTGAGGCAAGTATTTCGTCTAATGTTCTCATTAATA

Fln Alignment:

sp_v1.1_unigene1233___MSQEMEKRPSSQVGGFNADGGFSLETAGAQMQIGPGSPVSTAEKTEEMTHIDRAINAAVVFAAGSFLVTKMLTIDHDYWHGWTLYEIVRYAPVHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCYEGKQLFEFNRIRMMRSGLVGFSLHGSLSHYYYHLCEALFPFQGWWVVPAKVAFDQTIWAAVWNSIYFTVLGLLRFESPANIFGELKATFWPLLTAGWKLWPFAHLITYGVVPVEQRLLWVDCVELIWVTILSTYSNEKSEARSLEASSEGKPDSVLKSSSDVSQ
B8LNA6______________MSQETEKLPTSQVGGFKPEGGLSLETAGAQMQIGSGSQVSQADKEEEMKFIDRAINAAVVFAAGSFVVTKMLTIDHDYWHGWTLYEIVRYAPVHNWTAYEEALKTNPVLAKMVISGAVYSLGDWIAQCYEGKQLFEFNRIRMFRSGLVGFSLHGSLSHYYYQLCEALFPFQGWWVVPAKVAFDQTIWAAVWNSIYFTVLGLLRFESPANIFGELKATFWPLLTAGWKLWPFAHLITYGVVPVEQRLLWVDCVELIWVTILSTYSNEKSEARSLEALPEGKSDSVSKSSSDVSK

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
862	66	33			0.997452
973	25		75		0.996473
986			75	25	0.996473
1102			87	12	0.992554
1103	87		12		0.992554
1104	87		12		0.992554
1437		16		83	0.994512
1440		16	83		0.994512
1441			16	83	0.994512
1444	16		83		0.994512
1446	83	16			0.994512
1447	83			16	0.994512
1448	83			16	0.994512
1450	83		16		0.994512
1451		16		83	0.994512
1452			83	16	0.994512
1455		20	80		0.995493
1458	80	20			0.995493
1555	20	80			0.995493
1581			14	85	0.993533
1583		14		85	0.993533
1586		85	14		0.993533
1589	85	14			0.993533
1592	85		14		0.993533
1593		14		85	0.993533
1595	85		14		0.993533
1597		14		85	0.993533
1631	12		87		0.992554
1636			12	87	0.992554
1685		11		88	0.923564
1688			88	11	0.923564
1691	88		11		0.923564
1693	88			11	0.923564
1697		11		88	0.923564
1699		11		88	0.923564
1710	11			88	0.923564
1751	11		88		0.923564
1754	88		11		0.923564
1755	88		11		0.923564
1789			90	10	0.90298
1792			10	90	0.90298
1872		5		94	0.998744
1874	94			5	0.998744
1875	94	5			0.998744
1876		94	5		0.998744
1878			5	94	0.998744
1880		5		94	0.998744
1883			94	5	0.998894
1886		5		94	0.998894
1888	91		5	2	0.995912
1889		94		5	0.998894
2213		14		85	0.993533
2262	60	40			1.0
2266		22		77	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain