SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1227

Length: 1842 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1227

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative non-green plastid inner envelope membrane protein n=3 Tax=Arabidopsis RepID=Q9ZVH7_ARATH	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	non-green plastid inner envelope membrane protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	63%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLD9

Fln msg:

Fln protein: MEQMALSCTSRGDVGAQNASMSLASPLYLGRSPSKAAQVRCLQWTRVLGFKGVRVYCQTGLGRGVGMRRCIPVAGSSDSRAKNRVVVAASSQEGSASSDVDVEKVRNEFDKQADESEEAWKQSLDAFKDQASRMQGISKEAYAVYAEKAKIVLKDTTDQLKLQSEKMRAVLTSTAEEIRVKGKENLSIWIENVPETVKDVAETTIGVHPDDLKNLSKIHDFCLGIPYGALLFVGGFLSFLITGSIPAVRFGVILGGIHLAASISSLKAWKKGDSSIPFVKGQAAIALIILLRESRVLCQRPSLIPGFFMSVFSAAILLFYSYIIFSERNQLKNVEPESSD*

Protein Length: 342

Fln nts: ATGGGGGTGCCTGAGAGTAGAGAGGAGAGGTTAGGCATATAAATTGAAATGTTACAAATATCGGGGAGGAAGAGCTGGAAATCGCTCTGACTAATTTTATACTACCCCGACTTCACCTACTTCTGTAAATCACCTATTTTTCTCGTGCATATCCTATTTTCCTAGTAATTTATTGGTCGTAGTTTCAATTCCCGTCGATTCAAATTCAGCCCCTCTATTTCAGTTTTTTGTAATTCGTCCCGTATTTGGGTTTACTTTGAAGGCACCCGATAAAAAAGACGGTTTGAGACCGTGTCAATACTGTCTGTGCCTGGT_-_ATGGAACAGATGGCGTTGTCTTGCACTTCAAGAGGCGATGTTGGTGCGCAGAATGCCTCAATGTCTCTGGCTTCGCCTTTGTATTTGGGAAGGAGCCCTTCAAAGGCAGCGCAGGTCCGTTGTTTGCAGTGGACGAGGGTTTTAGGGTTTAAGGGTGTCAGGGTCTATTGCCAAACAGGGCTTGGAAGAGGAGTTGGCATGCGCCGTTGCATACCAGTTGCAGGATCCTCTGATTCTCGGGCGAAGAACAGGGTCGTCGTTGCTGCTTCTTCCCAAGAAGGATCGGCTTCCTCAGATGTTGATGTAGAAAAGGTAAGAAATGAATTTGATAAACAAGCAGATGAATCTGAGGAAGCATGGAAGCAATCCCTTGATGCTTTCAAGGACCAGGCTTCCAGAATGCAGGGAATTTCAAAAGAGGCATATGCTGTCTATGCTGAAAAAGCGAAGATAGTGTTAAAGGATACGACAGATCAGTTGAAACTACAGTCAGAAAAGATGAGAGCAGTTTTAACTTCAACCGCAGAGGAAATCCGTGTGAAGGGAAAAGAAAATTTGTCAATTTGGATTGAAAATGTTCCTGAGACAGTAAAGGATGTAGCTGAAACTACTATTGGTGTTCATCCAGATGATCTTAAAAACCTGTCTAAAATTCATGACTTTTGCCTTGGTATTCCATATGGTGCACTTCTTTTTGTTGGGGGTTTTCTTTCATTTCTCATAACTGGAAGCATTCCTGCTGTTCGTTTTGGAGTCATCCTAGGTGGGATACACCTAGCTGCGAGCATTTCAAGCCTCAAGGCCTGGAAGAAGGGTGATTCGTCCATTCCCTTTGTGAAAGGACAAGCTGCCATTGCACTCATCATTTTACTGAGGGAGTCACGAGTACTTTGTCAGAGGCCTTCTTTGATTCCAGGCTTCTTTATGTCTGTTTTCAGTGCTGCAATACTACTATTTTATTCCTATATAATTTTCTCTGAACGGAACCAGTTGAAGAATGTTGAGCCAGAGTCTTCAGACTGA___TATGGCAAGAAGCAAGTAACCATACATGTGAAGAGTTTATGTACAGTTTTGCCATTTTGGTGAAGAATGAGCACCTTGCGTACATGTGGGACAAGGTGGAGATTATCATCTCTATTAATACCCCATCTCAGCCTCTGTAAATTTTAAGAGATTCTATTAGCATGTGCAGTTTGTCACAAAATAGCATGCCATGTTTGGTTAACTGCCAAGGAGAGTTCTTTCTTGTTACTTTGATAAAATGGTCAGAAATTGTAATTTGGCAATAAAATCAGCATGCTGTTGTTGATGTTAGTGGGAACGCCATGATGTTTGGCTTTTAGGTCATATGGTATACTGGTATTTGTTGGAATTTAGATTCTGAATATCAAAGGTTCCGAGAGTCGTGAAATTTGGTAAGGCCCCTCGTTTAAAGAGGCCTCTATAGTGCTTTTCTAATATTTTTCTATCAGTTTTTTTAATATTGATTATCAAATTTATATTGGTTTTTACTACATCAATTCCATG

Fln Alignment:

sp_v1.1_unigene1227___MEQMALSCTSRGDVGAQNASMSLASPLYLGRSPSKAAQVRCLQWTRVLGFKGVRVYCQTGLGRGVGMRRCIPVAGSSDSRAKNRVVVAASSQEGSASSDVDVEKVRNEFDKQADESEEAWKQSLDAFKDQASRMQGISXXXXXXXXXXXXIVLKDTTDQLKLQSEKMRAVLTSTAEEIRVKGKENLSIWIENVPETVKDVAETTIGVHPDDLKNLSKIHDFCLGIPYGALLFVGGFLSFLITGSIPAVRFGVILGGIHLAASISSLKAWKKGDSSIPFVKGQAAIALIILLRESRVLCQRPSLIPGFFMSVFSAAILLFYSYIIFSERNQLKNVEPESSD
B8LLD9______________MEHMALSCTSSGDVVAKNASMSQASPLYLGRSPSKAAQVRCLQWRRVLGFKGVRVYYQSGLGGGVGMRCCKRVAGSRDSLVKNRVVVAASSQEGSASSDVEVEKVRNELEKQSDESEEEWKQTLDAVKEKASRMQGISKEAYDVYAEKAKIVLKDTTELLKLQSEKMRVVLASTAEEIGVKGKENLSIWIENAPETVKDVAETAFGVHPEDLKNLSKIHDFCLGIPYGALLFFGGFLSFLITGSIPAVRFGVILGGIHLAVSIASLKAWKKGDSSVPFVKGQAAIALIILARELRVLYQRPSLIPGFFMAVVSATILLFYSYIILSERNQLKNVEPESSD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
161		77		22	0.999999
254	83		16		0.999991
303	14		85		0.999981
1126	75			25	0.996473
1128	75		25		0.996473
1129	75		25		0.996473
1346		87		12	0.992554
1641	15	85			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain