SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1224

Length: 1663 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1224

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid fission	GO:0043572	Biological Process	0.0	55%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADQ6

Fln msg:

Fln protein: MEADEIGVVLSRASELRSKINNCIERASAQDEDDDISEGGSGTTTGKMSELVKVNEEQRRWLETGGDIEVDSLINIRDALDSLEEQLACLQALQQQQRLERDATLAELDESRRILVKKLKDYRGKDLEVIQEACAFAGEPVEQKDDILLPPYGRRLPESFISPAYHYSPPLHSEHSARRKNVSAEHSFVTGNGKQETENGDSAESEEVSSQINNRTDKKQTNGFVHIIGLTTKAVLIVGSVISVLTLASFEPKLRRSVPSLKLSELLPRRMNIPSIQSKADVPNQCPPGKVLLIEDGIPRCFVKERVEVPFEPVVRAPDISYGCG*

Protein Length: 327

Fln nts: ATGGGGAAAATGACGAGTGCCCTGATCAGTGAATTTTCAGTGATATTTTACTTTGAACACCACATCTTTAAAACTCAAAACATTCTGATAGGCTACATTCCGTGCCAATGAAAGGTGTAGGTTAGGCTATGATATATTTCAGAGTGCTCGTAGTGAACTAGGCTTTACTCAGGTTTTATTCTCAACCGAAATTCTAATTGGATTTATGTGATAGTACCCAAACCATAGGTTGGGTAGCTTGTATCCTACTCTGAGATATTAAGTCCATTGGTAAAGAGGGAGCCAAACCCATCTTCATTA_-_ATGGAGGCAGACGAGATAGGAGTGGTGCTCTCAAGGGCATCCGAGCTCCGGTCGAAGATCAACAATTGCATCGAGAGGGCCTCTGCACAGGACGAGGACGATGACATATCTGAGGGAGGAAGTGGAACCACCACGGGCAAGATGTCTGAACTTGTTAAGGTCAATGAAGAGCAGAGGAGATGGCTGGAAACGGGCGGAGATATTGAGGTCGACAGCCTCATAAACATTCGAGACGCTCTTGATTCACTGGAGGAGCAATTAGCATGTTTGCAGGCCTTGCAGCAGCAACAGCGACTGGAAAGAGATGCAACTCTTGCCGAGCTTGATGAAAGCCGGAGAATTCTAGTAAAGAAACTTAAAGATTACAGAGGCAAAGACTTGGAAGTTATACAGGAAGCTTGTGCTTTTGCTGGTGAACCTGTTGAGCAGAAGGATGATATACTTTTGCCCCCATATGGACGACGTCTTCCAGAGTCCTTCATCTCACCTGCTTATCACTATTCTCCGCCGCTGCATTCTGAACATTCAGCCAGGAGAAAGAATGTGTCTGCTGAGCATTCTTTTGTGACCGGTAATGGAAAACAGGAAACTGAAAATGGCGACTCTGCTGAAAGTGAGGAGGTAAGCTCACAAATTAATAACCGAACTGATAAAAAACAAACAAATGGCTTCGTGCATATAATTGGTTTGACTACAAAAGCAGTTCTAATAGTTGGAAGTGTAATTTCAGTCCTCACCTTAGCTAGCTTTGAGCCCAAACTTCGTAGAAGTGTTCCTTCTTTAAAACTGTCAGAGCTATTGCCCCGGCGGATGAATATTCCTTCAATACAATCAAAGGCAGATGTTCCCAACCAGTGTCCTCCTGGGAAAGTATTATTAATTGAAGATGGTATTCCTAGGTGCTTTGTCAAGGAGCGTGTAGAAGTACCTTTTGAACCTGTTGTAAGAGCTCCAGATATTTCTTATGGCTGTGGATAA___CTCTGGCGCTAGTAGGATTTCATATGTATAGAAAATGTATAGTTCCAGTTGATTATTATTGAGATGTCTATGGAATTTTAGTTAGATTATGAAACACCTACTGCCATGATCACAAAAGGGAACTTTGTGCCTTGCTACTCTATTTAGAATCCAGAATTTTCCAACTTAGCTACCTAGTTTTTATTTGGTGTATTGCCAAAGATGACTGCACTGGAAGTATACTTTTTCCATTACAACTGTATTGCATACTTCTTTCCATTACAACTTTATTGCTTATTTTGATTGGGATCAATTGTAGCCATGAAATATGTTTTTATGAAAAACAGTATAGTAGATTGCTTTATAAAAAAATTCTGAAATGTGATATATCCGGAAGTAATTCAGT

Fln Alignment:

sp_v1.1_unigene1224___MEADEIGVVLSRASELRSKINNCIERASAQXXXXXXXXXXXXXXXXXXXXLVKVNEEQRRWLETGGDIEVDSLINIRDALDSXXXXXXXXXXXXXXXXXXXDATLAELDESRRILVKKLKDYRGKDLEVIQEACAFAGEPVEQKDDILLPPYGRRLPESFISPAYHYSPPLHSEHSARRKNVSAEHSFVTGNGKQETENGDSAES-EEVSSQINNRTDKKQTNGFVHIIGLTTKAVLIVGSVISVLTLASFEPKLRRSVPSLKLSELLPRRMNIPSIQSKADVPNQCPPGKVLLIEDGIPRCXXXXXXXXXXXXXXXAPDISYGCG
D5ADQ6______________MEADEIGVVLSRASELRSKINNCIERASAQDEDDDISEGGSGTTTGKTSELVKVDEEQRRWLEMGGDMEVDSLINIRDALDSLEEQLACLQALQQQQRLERDATLAELDESRRILVKKLKEYRGKDLEVIQEACAFAGEPVEQRDDILLPPYGRRLPESFISSVHHYSPPLYSAHSARRRNVSAEHSFMTGNERQETENDDSAESKEEVSSQINNQNAKKLINGFGQIIGLTTKAVLVIASVISVLTLASFEPKLRRSVP-LKLSEVLPRRMNIPSIQSKAHVPSECPPGKVLLIEDGIPRCFVKERVEVPFEPVVKAPDISYGCG

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1028			10	90	0.90298
1029			10	90	0.90298
1030			10	90	0.90298
1339	14			85	0.993533
1350	28	71			1.0
1359		28		71	1.0
1360			28	71	1.0
1362	71	28			1.0
1365			40	60	1.0
1367		40	60		1.0
1368	60	40			1.0
1371	60		40		1.0
1372			80	20	0.995493
1373		40	60		1.0
1374	60			40	1.0
1375	60		40		1.0
1376	60			40	1.0
1380		60		40	1.0
1381		40		60	1.0
1386		80		20	0.995493
1396	80			20	0.995493
1525		11		88	0.923564
1588	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain