SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1212

Length: 1552 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1212

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acetylglucosaminyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RUK1_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	glycosyltransferase family 14 protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWZ8

Fln msg: your sequence is shorter than subject: 331 - 433

Fln protein: TLASLYHPLNQYVVHLDRESSPKERVDLANYVRSNPIFAEVGNVHMITKANMITYKGPTMVSNTLHAAAILLRKSKEWDWFINLSASDYPLVTQDDLLHTFSSLPKNLNFIEHTSSLGWKENQRAKPIIIDPGLYLSRKSDIFWVAEKRDIPTAFKLFTGSAWMVLSRAFIEYCVWGWDNLPRTVLMHYANFVSSPEGYFHTVICNTQEFRNTTVNHDLHYISWDNPPKQHPHSLGLSDSPKMIDSKAPFARKFHGDDPVLDKIDKELLGRQNGRFTPGGWCKGNNDNVSDPCSTIGDTNFLKPGLGAKRLGELIKDLLSPKKLAQTQCK*

Protein Length: 332

Fln nts: GGACTCTGGCATCTCTTTACCATCCCTTGAATCAATATGTTGTGCATTTAGACAGGGAATCTTCGCCGAAAGAAAGAGTAGACCTTGCCAACTATGTCAGATCAAATCCGATCTTTGCAGAGGTGGGCAATGTGCATATGATTACTAAGGCTAATATGATCACTTACAAAGGACCCACCATGGTTTCAAACACACTTCATGCTGCAGCTATTCTCCTGAGAAAAAGTAAGGAGTGGGATTGGTTTATCAACCTCAGTGCATCGGACTATCCTCTTGTAACTCAAGATGACTTGCTCCATACATTTTCATCGCTGCCTAAGAATCTAAATTTTATTGAGCATACCAGCAGTTTAGGATGGAAAGAGAATCAAAGGGCGAAACCGATTATTATAGATCCTGGACTGTATTTGTCTAGGAAGTCTGACATTTTTTGGGTTGCTGAAAAAAGAGACATTCCTACTGCATTCAAATTGTTTACAGGTTCTGCTTGGATGGTACTATCTCGAGCTTTTATCGAGTACTGTGTCTGGGGTTGGGACAATCTTCCAAGAACAGTTCTGATGCACTATGCAAATTTTGTTTCTTCACCTGAGGGATATTTCCACACCGTCATTTGTAACACCCAGGAATTTCGGAACACAACAGTCAATCATGACTTACATTACATATCTTGGGATAACCCGCCAAAGCAGCATCCACATTCTCTTGGTTTAAGTGATAGTCCAAAAATGATAGATAGTAAAGCTCCATTTGCAAGGAAATTTCATGGCGATGACCCTGTGCTTGACAAAATAGACAAAGAGCTTCTGGGACGTCAAAATGGGCGTTTTACACCTGGTGGATGGTGTAAAGGAAATAACGATAATGTCAGCGATCCTTGTTCTACTATAGGTGATACAAATTTTCTCAAGCCTGGTCTAGGTGCGAAGAGGCTTGGAGAGTTGATTAAGGATCTCTTGTCTCCTAAAAAACTTGCACAAACACAATGTAAGTGA___AATATGCGTTTTCCATCTCGGGTACCTTTGTGCATTTACTTTCATCTACGAGTTTCCAGCCAATCCCCAATCCGGGACGAGATTGCTGGTACTAGTTTCCAGCCAATTGTAATATGATATAAAATATAAGAATGCCCCTGGAAAGCCTCATGGGAATGAGCATATTTTGATCTCACCTTTTAGTTTCCATGGCAATGCATGCTGCAGGATCAGAGTGTATTCTATATGACAATAATCAGCCAATTTCTTCTCAGAGGTTTGAGCTGTTAATTAATTAACATTGCGAGATAATGTAAGCTAAAGTAGTAATTATTTCTGTCCTTGTCACTTGTAATACAGTTCTGAGGTAGAGAAGGCAAGGTATGGCCTTGTTGAATTCGAGGAATTGCATATTTGCTCGTTAAAAATGAAAGCATTTTTCATGTAAGAACCGCAGAGGTCCAAGATTAATTCATTATGGGTATTAGAGCGGACCATCATATCTATTTTTTAGTGTACATTCTAATTTCCCCCTCGTGAATGACAAGAGCTATCTGCACGTTAACCAGACAAAAAAA

Fln Alignment:

sp_v1.1_unigene1212___TLASLYHPLNQYVVHLDRESSPKERVDLANYVRSNPIFAEVGNVHMITKANMITYKGPTMVSNTLHAAAILLRKSKEWDWFINLSASDYPLVTQDDLLHTFSSLPKNLNFIEHTSSLGWKENQRAKPIIIDPGLYLSRKSDIFWVAEKRDIPTAFKLFTGSAWMVLSRAFIEYCVWGWDNLPRTVLMHYANFVSSPEGYFHTVICNTQEFRNTTVNHDLHYISWDNPPKQHPHSLGLSDSPKMIDSKAPFARKFHGDDPVLDKIDKELLGRQNGRFTPGGWCKGNNDNVSDPCSTIGDTNFLKPGLGAKRLGELIKDLLSPKKLAQTQCK
A9NWZ8______________TLASLYHPLNQYVVHLDRECLPKERVDLANHVRSNPIFAEVGNVHVITKANMITYKGPTMVSNTLHAAAILLRKSKEWDWFINLSASDYPLVTQDDLLHTFQSLPRNLNFLEHTSSLGWKENQRAKPIIIDPGLYMSRKSDIVWVAEKRDIPTAFKLFTGSAWMVLSRAFVEYCIWGWDNLPRTVLMYYANFVSSPEGYFHTVICNTQEFQNTTVNHDLHYISWDNPPKQHPHSLGLSDSPKMIDSKAPFARKFHGDDPVLDKIDKELLGRQNGRFTPGGWCKGNRDNGSDPCSAIGDKNFLKPGLGAKRLGELIKDLLSPAKFAQNQCK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1055	66		33		0.997452
1086			66	33	1.0
1272			12	87	0.992554
1391		20		80	0.999996
1473	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain