SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1210

Length: 2678 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1210
GGCTCTCTTCTTTGAATTTGTAGAGGGTCATGCATATTTGTCAGCTTACATTTTTCCATAATAGTGTGCACGATCTTCATCTGATTTGAAACATCTAGCAAATAATTTGTGGCAGATCCCCCACATTGATAATGTTTTATTGATTAAATTCTCAAGATTATAAGATCCAATCTGTACCACTGTGTTGGATTGATTCAGTAATTTCTCCAATTTTTTGTGTCGATTTTAGGGTTTCCATGGACGCAAAGTTTTTAAACCGATATGCATTGTCACTTGATAACTCTCCTCCCAATCCACCATCTGTGCCCACTTCTCGGCTGTCCTCGATTTCAATAGTTGATAGAAGAGGGTATGGAAGAATGAAAGCAGCAAGGTCTAGCCCAATTCGCTGCCAGAAAACCCACAATGAAAAATCTGTAAGCAGTACGAAATTAGAATTAAGCAGTGAAAATGGTGCTAGTTCTATCATCAAATCGAGGTCCATTGCGACAACCAAGTTACAGGATCAAATGGTTTCTCCTGCAATCTCTACCAACGGAAGATCGCATGAACAAATTGAAGGATCGATCATACAAAATGCCGAAGATTTCAGGGAAATAGCATCCCTTGTTCGCTCGACGAAGTTGAAGGTCCTTGAAAGGGATACAACTAGGTTGCCTAGGATTGAGACTGCTCGTGAATTTCATGAAGGTTTCAGCAAGGGACTTGGAATTGTCGAATTTCTCAAGGGAAAAAAATTTCTCATCACTGGTGCCACGGGATTCCTTGCCAAAGTGCTGATCGAGAAAATACTCAGGACGCAGCCTGAAGTTGGAAAGATTTTTCTTGTCATCAAGGCCAACGATTATGAGTCTGCACTACAAAGGTTGAAGAAAGAAGTGATGTCTTCTGACTTATTCAAGCGAATACACGAGACCTATGGCGACCAATACGAGGAATTCATGATGAAAAAGCTGGTTCCCGTTGTTGGAGATGTTACCCAAGATAATCTTGGAATAGAAGCCCACATCGCTGATGTGCTAGTACAGGAAGTCGATATAGTTCTGAACTCGGCAGCAAATACAACATTCGACGAACGGTATGACGTCGCACTGGACATAAACACGAGGGGAATTTCCCGTCTCCTGGCGTTTGTAAACCGCTGCAAAAAGCTTCAGCTATTTCTACAAATATCGACTGCGTATGTTAATGGACAGAGACAAGGCCGAGTGGCAGAGAAGCCTTTCCAGATGGGGGACAGCATTACCAGGGAGAAGGCCCAACTAGCTTTACATGAATCTCCTCCAATTTTGGACATTGAAGGTGAATTTGAATTAGCCAAGAAAACCCTAGAGGCTCTTGAGAACGAGACTTCAAATCTTCACAAATCAAATGGTCAGAGGTCACTGGATGGCGAGAAGCATGTGACTCAAGCCATGAAGGCATTAGGCATGGAAAGGGCAAGGAAATATGGATGGCAAGATACCTACGTGTTCAGCAAGGCAATGGGAGAAATGCTAATTGGCAAATTTCGTGGAGATTTACCAGTGGTCATAGTTCGTCCAAGTGTGATTGAGAGCACTTACTCTGATCCATTCCCCGGATGGATGGAGGGCAACAGAATGATGGATCCTATCGTTCTATACTATGGTAAAGGTCAGCTAACGGGCTTCTTGGCTGATACCAATGGAGTTCTAGACGTGGTGCCAGCGGATATGGTTGTAAATGCAACGTTAGCAGCCATGGCGAAGCATGCTGGAAAGACTGGTCTGGAGGTGTATCATGTGGCTTCTTCCGTTGTAAATCCACTGACATTTGGAAAACTAGCAGGAGTACTGTTTGATCATTTTAAATCCAATCCATACATTGACCCCAAAGGCAAGCACATCGAAGTACAGAAAATGAAATTATTCAACAAAATGGACGATTTCTCTGATCATGTTCGGAATCGTGCATTTGATATGCCACTCAACATCGGACGGAGTTCTCCAAAGAAAATATCAGAGAAGCGTAAGAGCATATGGCTGAAAGCAATAGAACAAGCCAAATATCTGGCCAATATATACCAACCATACACATTTTATCAGTTAGGCGGAGAAAGGAGACCTCATAATTTCGCAAACCAGGTGATGTGTCATCTGCTCGGATATCTTCAATACGCACTGCAGTGCCAGACAATGTAGACAATACAAGGCGCTGACGAAAATGTTGTGTGCCATGCATCTGTAAGGTAGACGCTTTCACCATATTCACCTAAGCCGATGTTCCTTGAATCCTGATCTAGAACTCCTTGATTTCAGTAGGTTAGAAAGTTCATCAAAACCTGCTACCAGCCGAGTAGTATGAAGCCAACAGCTAAACACCAAGTAGCAAGGTGGGGTTCAATCCAGAAAATTATGGCTGATACCGCTGAGGAAGTTGTTATTGCCTCTAACCATTATTACCCCTAAGGAGTCACATCAACTGCCGGTGATTTTTCTCCTTGGCGATGAACGACTCACCTCAACAATGGGCTGAGCCCTTTGCAACTACAGACTGCCGAACTTCTTCTTGAAAGCGTGAATCTCCTTACGATTTTCCAACAGCGGCCTCAATTTTCAATAAAAAATTCTGCAACAGATTTTTCAGGCAAACAGCGGCCTCGATTATTACAATTTAGGCCTTTCTAAAAATATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene1210

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	male sterility 2 [Brassica rapa subsp. chinensis]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen exine formation	GO:0010584	Biological Process	0.0	71%
Blast2go	fatty-acyl-CoA reductase (alcohol-forming) activity	GO:0080019	Molecular Function	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Male sterility, NAD-binding	IPR013120	-	0.0	71%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is longer than subject: 642 - 510

Fln protein: MDAKFLNRYALSLDNSPPNPPSVPTSRLSSISIVDRRGYGRMKAARSSPIRCQKTHNEKSVSSTKLELSSENGASSIIKSRSIATTKLQDQMVSPAISTNGRSHEQIEGSIIQNAEDFREIASLVRSTKLKVLERDTTRLPRIETAREFHEGFSKGLGIVEFLKGKKFLITGATGFLAKVLIEKILRTQPEVGKIFLVIKANDYESALQRLKKEVMSSDLFKRIHETYGDQYEEFMMKKLVPVVGDVTQDNLGIEAHIADVLVQEVDIVLNSAANTTFDERYDVALDINTRGISRLLAFVNRCKKLQLFLQISTAYVNGQRQGRVAEKPFQMGDSITREKAQLALHESPPILDIEGEFELAKKTLEALENETSNLHKSNGQRSLDGEKHVTQAMKALGMERARKYGWQDTYVFSKAMGEMLIGKFRGDLPVVIVRPSVIESTYSDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADTNGVLDVVPADMVVNATLAAMAKHAGKTGLEVYHVASSVVNPLTFGKLAGVLFDHFKSNPYIDPKGKHIEVQKMKLFNKMDDFSDHVRNRAFDMPLNIGRSSPKKISEKRKSIWLKAIEQAKYLANIYQPYTFYQLGGERRPHNFANQVMCHLLGYLQYALQCQTM*

Protein Length: 643

Fln nts: GGCTCTCTTCTTTGAATTTGTAGAGGGTCATGCATATTTGTCAGCTTACATTTTTCCATAATAGTGTGCACGATCTTCATCTGATTTGAAACATCTAGCAAATAATTTGTGGCAGATCCCCCACATTGATAATGTTTTATTGATTAAATTCTCAAGATTATAAGATCCAATCTGTACCACTGTGTTGGATTGATTCAGTAATTTCTCCAATTTTTTGTGTCGATTTTAGGGTTTCC_-_ATGGACGCAAAGTTTTTAAACCGATATGCATTGTCACTTGATAACTCTCCTCCCAATCCACCATCTGTGCCCACTTCTCGGCTGTCCTCGATTTCAATAGTTGATAGAAGAGGGTATGGAAGAATGAAAGCAGCAAGGTCTAGCCCAATTCGCTGCCAGAAAACCCACAATGAAAAATCTGTAAGCAGTACGAAATTAGAATTAAGCAGTGAAAATGGTGCTAGTTCTATCATCAAATCGAGGTCCATTGCGACAACCAAGTTACAGGATCAAATGGTTTCTCCTGCAATCTCTACCAACGGAAGATCGCATGAACAAATTGAAGGATCGATCATACAAAATGCCGAAGATTTCAGGGAAATAGCATCCCTTGTTCGCTCGACGAAGTTGAAGGTCCTTGAAAGGGATACAACTAGGTTGCCTAGGATTGAGACTGCTCGTGAATTTCATGAAGGTTTCAGCAAGGGACTTGGAATTGTCGAATTTCTCAAGGGAAAAAAATTTCTCATCACTGGTGCCACGGGATTCCTTGCCAAAGTGCTGATCGAGAAAATACTCAGGACGCAGCCTGAAGTTGGAAAGATTTTTCTTGTCATCAAGGCCAACGATTATGAGTCTGCACTACAAAGGTTGAAGAAAGAAGTGATGTCTTCTGACTTATTCAAGCGAATACACGAGACCTATGGCGACCAATACGAGGAATTCATGATGAAAAAGCTGGTTCCCGTTGTTGGAGATGTTACCCAAGATAATCTTGGAATAGAAGCCCACATCGCTGATGTGCTAGTACAGGAAGTCGATATAGTTCTGAACTCGGCAGCAAATACAACATTCGACGAACGGTATGACGTCGCACTGGACATAAACACGAGGGGAATTTCCCGTCTCCTGGCGTTTGTAAACCGCTGCAAAAAGCTTCAGCTATTTCTACAAATATCGACTGCGTATGTTAATGGACAGAGACAAGGCCGAGTGGCAGAGAAGCCTTTCCAGATGGGGGACAGCATTACCAGGGAGAAGGCCCAACTAGCTTTACATGAATCTCCTCCAATTTTGGACATTGAAGGTGAATTTGAATTAGCCAAGAAAACCCTAGAGGCTCTTGAGAACGAGACTTCAAATCTTCACAAATCAAATGGTCAGAGGTCACTGGATGGCGAGAAGCATGTGACTCAAGCCATGAAGGCATTAGGCATGGAAAGGGCAAGGAAATATGGATGGCAAGATACCTACGTGTTCAGCAAGGCAATGGGAGAAATGCTAATTGGCAAATTTCGTGGAGATTTACCAGTGGTCATAGTTCGTCCAAGTGTGATTGAGAGCACTTACTCTGATCCATTCCCCGGATGGATGGAGGGCAACAGAATGATGGATCCTATCGTTCTATACTATGGTAAAGGTCAGCTAACGGGCTTCTTGGCTGATACCAATGGAGTTCTAGACGTGGTGCCAGCGGATATGGTTGTAAATGCAACGTTAGCAGCCATGGCGAAGCATGCTGGAAAGACTGGTCTGGAGGTGTATCATGTGGCTTCTTCCGTTGTAAATCCACTGACATTTGGAAAACTAGCAGGAGTACTGTTTGATCATTTTAAATCCAATCCATACATTGACCCCAAAGGCAAGCACATCGAAGTACAGAAAATGAAATTATTCAACAAAATGGACGATTTCTCTGATCATGTTCGGAATCGTGCATTTGATATGCCACTCAACATCGGACGGAGTTCTCCAAAGAAAATATCAGAGAAGCGTAAGAGCATATGGCTGAAAGCAATAGAACAAGCCAAATATCTGGCCAATATATACCAACCATACACATTTTATCAGTTAGGCGGAGAAAGGAGACCTCATAATTTCGCAAACCAGGTGATGTGTCATCTGCTCGGATATCTTCAATACGCACTGCAGTGCCAGACAATGTAG___ACAATACAAGGCGCTGACGAAAATGTTGTGTGCCATGCATCTGTAAGGTAGACGCTTTCACCATATTCACCTAAGCCGATGTTCCTTGAATCCTGATCTAGAACTCCTTGATTTCAGTAGGTTAGAAAGTTCATCAAAACCTGCTACCAGCCGAGTAGTATGAAGCCAACAGCTAAACACCAAGTAGCAAGGTGGGGTTCAATCCAGAAAATTATGGCTGATACCGCTGAGGAAGTTGTTATTGCCTCTAACCATTATTACCCCTAAGGAGTCACATCAACTGCCGGTGATTTTTCTCCTTGGCGATGAACGACTCACCTCAACAATGGGCTGAGCCCTTTGCAACTACAGACTGCCGAACTTCTTCTTGAAAGCGTGAATCTCCTTACGATTTTCCAACAGCGGCCTCAATTTTCAATAAAAAATTCTGCAACAGATTTTTCAGGCAAACAGCGGCCTCGATTATTACAATTTAGGCCTTTCTAAAAATATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene1210___IVEFLKGKKFLITGATGFLAKVLIEKILRTQPEVGKIFLVIKANDYESALQRLKKEVMSSDLFKRIHETYGDQYEEFMMKKLVPVVGDVTQD-NLGIEAHIA-DVLVQEVDIVLNSAANTTFDERYDVALDINTRGISRLLAFVNRCKKLQLFLQISTAYVNGQRQGRVAEKPFQMGDSITREKAQLALHESPPI-LDIEGEFELAKKTLEALENETSNLHKSNGQRSLDGEKHVTQAMKALGMERARKYGWQDTYVFSKAMGEMLIGKFRGDLPVVIVRPSVIESTYSDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADTNGVLDVVPADMVVNATLAAMAKHAGKTGLEVYHVASSVVNPLTFGKLAGVLFDHFKSNPYIDPKGKHIEVQKMKLFNKMDDFSDHVRNRAFDMPLNIGRSSPKKIS------EKRKSIWLKAIEQAKYLANIYQPYTFYQ
B8LRT2______________ILGFLNEKNILVTGSTGFLGKIFVEKILRTQPGVKRIFVLLRSEDFESAKIRFKNEVMGAELFKTLRGQHGDNFENFVFQKVVPVVGDVAGGHNLGIDKESTREHLWNILDAIVNNAASTMFDDRYDISLNVNTRGAENIVEFAKRCRKLQILLHVSTAYVVGRGSGRIKESPLKIGESMTAGN-ELEDENGPPLSLDIEAEFGLLENTLAKLHMDSSATGTTSTRSVQD--KEAIKHLKELGLERARRFGWPNTYSFTKAMGEMVVENRRENLPVVILRPTIIESTLAEPFPGWMEGTRTMDTFIVGYGKGRISFFLGDPELFLD-IPADMVVNQMMVAMATHAYQNDLFIYHVASSVGNPLRYSLLSDVAYNYFSKNPCVSNDGKIIRVKEMRFLKSMSSFRLHMFQR-YKAPLLVLGVVNEVISIFTARFTARYNQMLRNYNFMMYLAELYEPYVLFQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
2207			14	85	0.993533
2244		57		42	1.0
2246	85		14		0.993533
2267	85	14			0.993533
2292			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain