SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1206

Length: 2377 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1206
GTAAGAGCTAGTGCGGGCATGAACATGGGTGTCTAATAATCAAGGAGTTAAGATTGACCTCAGAGCTTTACCGTCTCAAATTACAGAGCATTCTTTGTAGATAGGAACCCTGTTGTTTTATAATTCAAAGTTTTACAATGCAGAAGAGGAAATCAGTCCGTTCTGATGCGGAAATCAACATCCTTAGTGATGAGATCCTCATAACTATTCTTGATAAGTTACAGGATCCTATAGATAGAAAGTCCTGGTGCCTGGTTTGCAAGCATTTTTTCTATCTGGAGGCCAACTACAGGAAGAAAGTACAGCTGATGCAAGCAGAGTTACTTCCAAGGATTCTGAGAAGATACAGTAAGATTCAGCATTTGGATTTATCCCTGTGTTCTCAGATCACAGATAAGAGTCTGGGGCATGTAGCAGGCATCCTCGGAAATCATTTGGTTTCTATCAATCTTTCTAGGTTGTGGACTTTCACTCATCTGGGTCTTTTTGAGTTGGTTAAAAATTGTCAATCTTTAGTCGAACTTGATCTTTCCAATTGCACTGAAATCACAGATCATGCAGCAGAAGCCATAGCACATGCCCGAAATTTGGAATCATTGAATCTAGTGAAATGCAAACAGCTTACTGACATGGGTCTTGTATGCATAGCTGTAGGATGTAGTAAATTACGGAATTTGAATCTTAGGTGGTGTGTGGGGGTCACAGACCTTGGAGTTGAGCTGGTTGCTATGAAATGCAAGGAGTTACGTAGTCTTGATCTCTCTTACACGCAGATAACAAACAAATGTCTTGCTTCAATTAACCGTCTAAATCATCTTGAGAATTTAGCATTGGTTGGATGTGTTCGTGTGGGTGATAATGGCCTTACGTATCTCAAAAAATCTTTGCAGAGACTTGATGTTTCGAAGTGTCAGAATGTTAGCTGCACGGGAATAATTTCACTTGCAAGTGGTTCCTCAGACTTGCGTCAACTTACTCTTGCCTATAGTATACCAGTTTCTGACGCTCTTCTTAAGAGCTTCCAAAACTTGGATAGACTACAAACGATCAAATTTGATGGTTGCGTAATTTCCCCCAGAGCGTTGGAGTCAGTTGGGAAAAGCTATTGCATGTCTTTGAGGGAATTAAGCTTAAGCAAGTGTATTGGAGTTACAGATGAAGGATTGACTGCACTTGTGGCATGCTGTAGAGAGCTGAACAAGTTAGATCTCACTTGTTGCCGTAATATAACTGATGTTGCTCTCTCGGCCATTGCAACATCATGCAGATATCTTTCATCTCTTAAGATGGAATCCTGCAGCTTGGTCACAGAAACAAGTTTGGCTATGTTAGGAGACGGCTGTCCTTTCCTGGAGGAGCTTGACTTCACCGACTGTAGCATAAACAATACAGGATCGAAATCCCTTTCTAAGTGTTCGGAATTGATAACTTTGAAACTAGGATTCTGCCCAAATATATCCAACGAAGGAATTGCCCATATAGGGGCCCGGTGCTCATCTCTCCAAGAACTTGATTTGTACAGATCTGTAGGAGTCGGGGATGCTGGATTAGCAGCAGTTGCCAATGGTTGCCCAAGGTTAAAGAGTATTAATATTTCTTATTGCATACATGTCACTGATAATGGTCTGACATCTCTCGCTCAATTGCAAAAACTTCACCAGCTTGAAATCCGAGGTTGTTCTGGGATTTCATCTGCTGGTCTCTCTGCAATCGCTTTAGGATGTAAGCGTATCGTTGAATTGGATATCAAAAGGTGCTATGGTGTTGACGACGTTGGAATATTGGCTGTAGCCAGGTCATGTCAAAATCTGCGACAGGTGAATGTCTCATATTGCTCAATCTCAGATGTTGGATTGTTAGCATTGGCGAGTCTTAGATGCTTACAGAACATAAAGCTAGTTTATTTGAGGAATGTAACGATCAATGGTTTCATGTCCGCTCTGCTGGCTTGCAAGAGTTCGAAGAAACTCAAGCTTATTCAATCCTTAAAGTACAACTTACCACGAGTTGTGATTGAGATGTTGGAAGCCCGTGGGTGCAATATTCGATGGATGGACAAGCCTTTTGTGATATAAGATGCTCATCTCAAATAAGTGTCGGTACTTGATATGTTTTCGGAATTGTAATATATATCCAAGAGTTCCTTTTACGGGTAGTGTTTGTCAATCTAAACAAAGCAAATTTAGGTAATGATGAATTTCAGTTTCAAACTCATGAATCTGTGGGTTTAATGTAGTGAGTAAATTATCTCACAAGTCCATCTTCTGAGAGATGAAATAAGCACCTATGATATCATAGGTACACATTGTATCTTGAAGAGCCTTGTATTTATTCTGAATGGTCTCTTCTTTATTTATATATTGAGGCTTTGAGTTTT

Ace file of the UniGene sp_v1.1_unigene1206

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein, atfbl3, putative	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	protein	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: your sequence is longer than subject: 646 - 335

Fln protein: MQKRKSVRSDAEINILSDEILITILDKLQDPIDRKSWCLVCKHFFYLEANYRKKVQLMQAELLPRILRRYSKIQHLDLSLCSQITDKSLGHVAGILGNHLVSINLSRLWTFTHLGLFELVKNCQSLVELDLSNCTEITDHAAEAIAHARNLESLNLVKCKQLTDMGLVCIAVGCSKLRNLNLRWCVGVTDLGVELVAMKCKELRSLDLSYTQITNKCLASINRLNHLENLALVGCVRVGDNGLTYLKKSLQRLDVSKCQNVSCTGIISLASGSSDLRQLTLAYSIPVSDALLKSFQNLDRLQTIKFDGCVISPRALESVGKSYCMSLRELSLSKCIGVTDEGLTALVACCRELNKLDLTCCRNITDVALSAIATSCRYLSSLKMESCSLVTETSLAMLGDGCPFLEELDFTDCSINNTGSKSLSKCSELITLKLGFCPNISNEGIAHIGARCSSLQELDLYRSVGVGDAGLAAVANGCPRLKSINISYCIHVTDNGLTSLAQLQKLHQLEIRGCSGISSAGLSAIALGCKRIVELDIKRCYGVDDVGILAVARSCQNLRQVNVSYCSISDVGLLALASLRCLQNIKLVYLRNVTINGFMSALLACKSSKKLKLIQSLKYNLPRVVIEMLEARGCNIRWMDKPFVI*

Protein Length: 647

Fln nts: GTAAGAGCTAGTGCGGGCATGAACATGGGTGTCTAATAATCAAGGAGTTAAGATTGACCTCAGAGCTTTACCGTCTCAAATTACAGAGCATTCTTTGTAGATAGGAACCCTGTTGTTTTATAATTCAAAGTTTTACA_-_ATGCAGAAGAGGAAATCAGTCCGTTCTGATGCGGAAATCAACATCCTTAGTGATGAGATCCTCATAACTATTCTTGATAAGTTACAGGATCCTATAGATAGAAAGTCCTGGTGCCTGGTTTGCAAGCATTTTTTCTATCTGGAGGCCAACTACAGGAAGAAAGTACAGCTGATGCAAGCAGAGTTACTTCCAAGGATTCTGAGAAGATACAGTAAGATTCAGCATTTGGATTTATCCCTGTGTTCTCAGATCACAGATAAGAGTCTGGGGCATGTAGCAGGCATCCTCGGAAATCATTTGGTTTCTATCAATCTTTCTAGGTTGTGGACTTTCACTCATCTGGGTCTTTTTGAGTTGGTTAAAAATTGTCAATCTTTAGTCGAACTTGATCTTTCCAATTGCACTGAAATCACAGATCATGCAGCAGAAGCCATAGCACATGCCCGAAATTTGGAATCATTGAATCTAGTGAAATGCAAACAGCTTACTGACATGGGTCTTGTATGCATAGCTGTAGGATGTAGTAAATTACGGAATTTGAATCTTAGGTGGTGTGTGGGGGTCACAGACCTTGGAGTTGAGCTGGTTGCTATGAAATGCAAGGAGTTACGTAGTCTTGATCTCTCTTACACGCAGATAACAAACAAATGTCTTGCTTCAATTAACCGTCTAAATCATCTTGAGAATTTAGCATTGGTTGGATGTGTTCGTGTGGGTGATAATGGCCTTACGTATCTCAAAAAATCTTTGCAGAGACTTGATGTTTCGAAGTGTCAGAATGTTAGCTGCACGGGAATAATTTCACTTGCAAGTGGTTCCTCAGACTTGCGTCAACTTACTCTTGCCTATAGTATACCAGTTTCTGACGCTCTTCTTAAGAGCTTCCAAAACTTGGATAGACTACAAACGATCAAATTTGATGGTTGCGTAATTTCCCCCAGAGCGTTGGAGTCAGTTGGGAAAAGCTATTGCATGTCTTTGAGGGAATTAAGCTTAAGCAAGTGTATTGGAGTTACAGATGAAGGATTGACTGCACTTGTGGCATGCTGTAGAGAGCTGAACAAGTTAGATCTCACTTGTTGCCGTAATATAACTGATGTTGCTCTCTCGGCCATTGCAACATCATGCAGATATCTTTCATCTCTTAAGATGGAATCCTGCAGCTTGGTCACAGAAACAAGTTTGGCTATGTTAGGAGACGGCTGTCCTTTCCTGGAGGAGCTTGACTTCACCGACTGTAGCATAAACAATACAGGATCGAAATCCCTTTCTAAGTGTTCGGAATTGATAACTTTGAAACTAGGATTCTGCCCAAATATATCCAACGAAGGAATTGCCCATATAGGGGCCCGGTGCTCATCTCTCCAAGAACTTGATTTGTACAGATCTGTAGGAGTCGGGGATGCTGGATTAGCAGCAGTTGCCAATGGTTGCCCAAGGTTAAAGAGTATTAATATTTCTTATTGCATACATGTCACTGATAATGGTCTGACATCTCTCGCTCAATTGCAAAAACTTCACCAGCTTGAAATCCGAGGTTGTTCTGGGATTTCATCTGCTGGTCTCTCTGCAATCGCTTTAGGATGTAAGCGTATCGTTGAATTGGATATCAAAAGGTGCTATGGTGTTGACGACGTTGGAATATTGGCTGTAGCCAGGTCATGTCAAAATCTGCGACAGGTGAATGTCTCATATTGCTCAATCTCAGATGTTGGATTGTTAGCATTGGCGAGTCTTAGATGCTTACAGAACATAAAGCTAGTTTATTTGAGGAATGTAACGATCAATGGTTTCATGTCCGCTCTGCTGGCTTGCAAGAGTTCGAAGAAACTCAAGCTTATTCAATCCTTAAAGTACAACTTACCACGAGTTGTGATTGAGATGTTGGAAGCCCGTGGGTGCAATATTCGATGGATGGACAAGCCTTTTGTGATATAA___GATGCTCATCTCAAATAAGTGTCGGTACTTGATATGTTTTCGGAATTGTAATATATATCCAAGAGTTCCTTTTACGGGTAGTGTTTGTCAATCTAAACAAAGCAAATTTAGGTAATGATGAATTTCAGTTTCAAACTCATGAATCTGTGGGTTTAATGTAGTGAGTAAATTATCTCACAAGTCCATCTTCTGAGAGATGAAATAAGCACCTATGATATCATAGGTACACATTGTATCTTGAAGAGCCTTGTATTTATTCTGAATGGTCTCTTCTTTATTTATATATTGAGGCTTTGAGTTTT

Fln Alignment:

sp_v1.1_unigene1206___LRRYSKIQHLDLSLCSQITDKSLGHVAGILGNHLVSINLSRLWTFTHLGLFELVKNCQSLVELDLSNCTEITDHAAEAIAHARNLESLNLVKCKQLTDMGLVCIAVGCSKLRNLNLRWCVGVTDLGVELVAMKCKELRSLDLSYTQITNKCLASINRLNHLENLALVGCVRVGDNG
D5A998______________ISRCSELITLNLGFCLNISAEGIYHIGACCSN-LQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNG

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
449	57	42			1.0
450	57		42		1.0
456	42			57	1.0
457		42		57	1.0
460	57			42	1.0
463		42		57	1.0
468		42	57		1.0
473		42		57	1.0
474	42	57			1.0
512	87		12		0.992554
513	87		12		0.992554
582		12		87	0.992554
601		25		75	1.0
621	87		12		0.992554
674	11		88		0.923564
706	87		12		0.992554
809	33		66		1.0
827	87		12		0.992554
873			71	28	1.0
991	85			14	0.993533
1068		87		12	0.992554
1074		12		87	0.992554
1295	87			12	0.992554
1297	12			87	0.992554
1350		16		83	0.994512
1361	80			20	0.995493
1377	12	87			0.992554
1380			12	87	0.992554
1381	87		12		0.992554
1795	11		88		0.923564
1913		20	80		0.999996
1990			10	90	0.999898
1992	90	10			0.999898
1993	90		10		0.999898
1994	90			10	0.999898
1996	10			90	0.999898
1997	90	10			0.999898
1999	90			10	0.999898
2000	90		10		0.999898
2001		90	10		0.999898
2002		10		90	0.999898
2004	90		10		0.999898
2005		90		10	0.999898
2009		10	90		0.999898
2101	30			69	1.0
2171			25	75	1.0
2206	70			30	1.0
2283	33		66		1.0
2303			87	12	0.992554
2326		33		66	1.0
2331	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain