SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1204

Length: 2880 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1204
CGTCGTGACCTTGGCTGTCACTCAAGCTTCCGGGGTTTTTAAGTCCAAAGGCGGTGAGGTTAGGGAGGATGATGATACTATAAAGGCTCATTTGCATTGGTGGATGGGGTTGGATGATAGACATAGAACTAAGAGGCTCGGCAGATAGTCGAAAGAAGACCAAACGATCCATTCGGGTACGAGTAACGGCGAGGGTTTAGACATGAACACTGCTTGAAACCCTATGTTTCTGTTTCTTTTCAGATTTTGATCTTATTCTCAACTTCCTGGAGTTCGACAGTCCTCTTTGCGAAGGCATCCATGAAGACAGAAAAAATGAAACCAAAAAGAAATCCCAGGGTTTTTATGGATATTTTAGTTGATGGTGAGCGAGCAGGAACCATTGTATTGGAGCTTTTTGCAGATATTGTGCCTAAAACTGCAGAAAATTTTAGAGCACTCTGTACAGGAGAGAAAGGTATTGGTAGAACAACAAAAAAGCCTCTGCATTACAAAGGATCCACTTTTCATCGAATAATTAAAGGATTTGTGGCTCAAGGAGGCGACTTTTCAAAGAAAGATGGTACTGGAGGAGAAAGTATATATGGTGGAAAATTTGCAGATGAAAATTTTCAGTTATGTCATGATGGCCCCGGTATTCTATCCATGGCCAATGCTGGTCCGCACACCAATGGTTCTCAGTTTTTTATTACTTTTGCAGCTGCACCTCATCTTGATGGCAAGCATGTTGTCTTTGGAAGAGTTGTGGAAGGAATAGATGTTATGAAGAAAATTGAGCGGTTACCTACTGCAGATCGAGGCAGACCTGTTGTTCCAGTTAAGATTTCCAATTGTGGTGAAGTTTCTCCGGGCAAAGATAATGGTATAGTTTCTATTGATGAAGATAAAAAGAAAGGAAAGAAACTGAAGGCCACAAAAGAAGCAGTGTCAAGTGATGATGATAGTCGGAAAATGCGTAAAAGGAAAAAGCATAGGAGGGTGCGCAAGGACCGAAGAAAGAGAAGACGTCGCCATTATTCTTCTGATTCAGACACCTCATCGGACACTGATTCAGATTCAGACTCCTCTGACAGTGAGTCTGATTCATACTCTTCGTCAGATGATACTAGCACTTCAAGTAAAGATGATAGGGTGAGGAGGAAGAAGAAATCATCTAGAAAAAGCAAGCATAGACATACAAAGCGACGGAGGGATAAGCGGAGAGGGAAAAGACATGGGCGGAAAGTGAAGAGATCAAGACGAAAGTCTAAGTGGAGCTCAGATAGTGATTATAGCAGTAGCAGTGATACAGAGAGTGAGACTTCAAGTGAGAGTGATACTGAAAGTGATAGTGAGAGTGATGTAGGTAAGAGAAGTGTGAAATCGAAGACACACTCCCGTGCAGTTGAGAAGCCTCAAAATTCTGACAAGCAAGGCATCGAGGAAGAAAAAGGAATTGTGGTCAAAGATATTGTGGAAGAAGGTGAATTAGTGAAAGAGAATGAGGAAAAAACCAAAGAGATGGATGTTGTTGAAGTTAAGGCAGACAGGAGTCCAGATTCTCGATCGCCTCAGAGCGATGCCCCTAGTGGTTCTAGGAGCCCTCGGAAGAGTTTGAGCAGGAGCCCAAAAAGGAGCTTGAGCAGGAGCCAGAGTGAGAGTCCTCGGAGGATCTTGAGCAGGAGCCTGAGCAGAAGCCCCAGAAGGGTATTGAGTAGAAGTCCTCGAATGAGTTTGAGTAGGAGCCCAAGTGTGATAGCTCGCAGGCATTTAAGCAGAAGCCCAAGTGTGGTCACTCGTAGGCCTTTAAGCCGGAGTCCACGAAGGAGTTTGAGTAGACATTCACGGCAAAACCTAGCCCAAAGTCCCCCGAAAAGTCGAAGCAGTCCTCCAAGCAGAAGGTTGTCAAGAAGTCGTAGTCCTGTTGTTGATAAGAGTACACTTCCCCCTCCTAATCAAAGTCAGACTACAGCAAGAAGTCCTAGCCCAGAGGGCACACCTAAACGCGTGCGAAGAGGTCGTGGGTTCAGCCAGCGTTACTCTTATGCTCGTCGTTATCGAACTCCTTCTCCAGACCGCTCTCCCCCAAGGTCTCATCGCGTCAGTGAAAGGAGTATTCCTGAAAGGGACAGATATTCAAGTTATAGGAGTTACTCTGAGCGCTCTCCAGCAAGACATTACAGAAACCCACCAAGAGGCAGGACTCCTCCAAGGTACAGGAGGAGCAGGAGTCGAAGCATGAGTTATAGCCCTGTAGCCTATCGGAACCGGAGAAGAAATCGAAGTCTCAGCCGCAGTCGTAGTCCTGCAGATGAGCGTCCTCGTGTCAGTGATCAGTTGCGCTCTCGTCTTGGTCCACGAGATTCATACGAAAGTAGAGGAAGGAGGGGCCGGTCCCCCTCAAGAAGCAGAAGCTCTTCTATGTCAAGATCGTCCGAGAGCTTGCCTGCGGACAATCGGCGCACTGCTTCTAGTGATAAGCACAAATCAGTACATTCCCCCAGGGGACAGCGGTCACCAGCAGCTTCACTTAGCAAATCGATGTCTCGAAGCCGAACACCACCAGGAAATGGGAACCTCGTCTCATATGGGGATGGAAGTCCTGATTCACGTTCCAAGTAATTATGTAGTATGTAGAAGTAGAACTCATGGTCTACTTTAGAAATGTAAAAGAAAGGTTAGGCAATTCCAGGCTTTATTGATGTGAACTGAGTAGATTTTTCCATGTTGAATTTTCCTTGAAACATTGCAAATAGTGGGCATTGTAGTAACTGACAATCTTATAATCCTTGGTTATATAGTCGTAATCCAGATTGTCATTTGGATTTTTTGATAATATGAAAGATGATTTTTATGGTGGTGTAAGTATTGAAGTAGAACTCATGGTCTACTTTAGAAATG

Ace file of the UniGene sp_v1.1_unigene1204

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cyclophilin, putative (EC:5.2.1.8)	-	-	69%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa).	-	-	66%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8VXA5

Fln msg: your sequence is longer than subject: 767 - 172

Fln protein: MKTEKMKPKRNPRVFMDILVDGERAGTIVLELFADIVPKTAENFRALCTGEKGIGRTTKKPLHYKGSTFHRIIKGFVAQGGDFSKKDGTGGESIYGGKFADENFQLCHDGPGILSMANAGPHTNGSQFFITFAAAPHLDGKHVVFGRVVEGIDVMKKIERLPTADRGRPVVPVKISNCGEVSPGKDNGIVSIDEDKKKGKKLKATKEAVSSDDDSRKMRKRKKHRRVRKDRRKRRRRHYSSDSDTSSDTDSDSDSSDSESDSYSSSDDTSTSSKDDRVRRKKKSSRKSKHRHTKRRRDKRRGKRHGRKVKRSRRKSKWSSDSDYSSSSDTESETSSESDTESDSESDVGKRSVKSKTHSRAVEKPQNSDKQGIEEEKGIVVKDIVEEGELVKENEEKTKEMDVVEVKADRSPDSRSPQSDAPSGSRSPRKSLSRSPKRSLSRSQSESPRRILSRSLSRSPRRVLSRSPRMSLSRSPSVIARRHLSRSPSVVTRRPLSRSPRRSLSRHSRQNLAQSPPKSRSSPPSRRLSRSRSPVVDKSTLPPPNQSQTTARSPSPEGTPKRVRRGRGFSQRYSYARRYRTPSPDRSPPRSHRVSERSIPERDRYSSYRSYSERSPARHYRNPPRGRTPPRYRRSRSRSMSYSPVAYRNRRRNRSLSRSRSPADERPRVSDQLRSRLGPRDSYESRGRRGRSPSRSRSSSMSRSSESLPADNRRTASSDKHKSVHSPRGQRSPAASLSKSMSRSRTPPGNGNLVSYGDGSPDSRSK*

Protein Length: 768

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTTCCGGGGTTTTTAAGTCCAAAGGCGGTGAGGTTAGGGAGGATGATGATACTATAAAGGCTCATTTGCATTGGTGGATGGGGTTGGATGATAGACATAGAACTAAGAGGCTCGGCAGATAGTCGAAAGAAGACCAAACGATCCATTCGGGTACGAGTAACGGCGAGGGTTTAGACATGAACACTGCTTGAAACCCTATGTTTCTGTTTCTTTTCAGATTTTGATCTTATTCTCAACTTCCTGGAGTTCGACAGTCCTCTTTGCGAAGGCATCC_-_ATGAAGACAGAAAAAATGAAACCAAAAAGAAATCCCAGGGTTTTTATGGATATTTTAGTTGATGGTGAGCGAGCAGGAACCATTGTATTGGAGCTTTTTGCAGATATTGTGCCTAAAACTGCAGAAAATTTTAGAGCACTCTGTACAGGAGAGAAAGGTATTGGTAGAACAACAAAAAAGCCTCTGCATTACAAAGGATCCACTTTTCATCGAATAATTAAAGGATTTGTGGCTCAAGGAGGCGACTTTTCAAAGAAAGATGGTACTGGAGGAGAAAGTATATATGGTGGAAAATTTGCAGATGAAAATTTTCAGTTATGTCATGATGGCCCCGGTATTCTATCCATGGCCAATGCTGGTCCGCACACCAATGGTTCTCAGTTTTTTATTACTTTTGCAGCTGCACCTCATCTTGATGGCAAGCATGTTGTCTTTGGAAGAGTTGTGGAAGGAATAGATGTTATGAAGAAAATTGAGCGGTTACCTACTGCAGATCGAGGCAGACCTGTTGTTCCAGTTAAGATTTCCAATTGTGGTGAAGTTTCTCCGGGCAAAGATAATGGTATAGTTTCTATTGATGAAGATAAAAAGAAAGGAAAGAAACTGAAGGCCACAAAAGAAGCAGTGTCAAGTGATGATGATAGTCGGAAAATGCGTAAAAGGAAAAAGCATAGGAGGGTGCGCAAGGACCGAAGAAAGAGAAGACGTCGCCATTATTCTTCTGATTCAGACACCTCATCGGACACTGATTCAGATTCAGACTCCTCTGACAGTGAGTCTGATTCATACTCTTCGTCAGATGATACTAGCACTTCAAGTAAAGATGATAGGGTGAGGAGGAAGAAGAAATCATCTAGAAAAAGCAAGCATAGACATACAAAGCGACGGAGGGATAAGCGGAGAGGGAAAAGACATGGGCGGAAAGTGAAGAGATCAAGACGAAAGTCTAAGTGGAGCTCAGATAGTGATTATAGCAGTAGCAGTGATACAGAGAGTGAGACTTCAAGTGAGAGTGATACTGAAAGTGATAGTGAGAGTGATGTAGGTAAGAGAAGTGTGAAATCGAAGACACACTCCCGTGCAGTTGAGAAGCCTCAAAATTCTGACAAGCAAGGCATCGAGGAAGAAAAAGGAATTGTGGTCAAAGATATTGTGGAAGAAGGTGAATTAGTGAAAGAGAATGAGGAAAAAACCAAAGAGATGGATGTTGTTGAAGTTAAGGCAGACAGGAGTCCAGATTCTCGATCGCCTCAGAGCGATGCCCCTAGTGGTTCTAGGAGCCCTCGGAAGAGTTTGAGCAGGAGCCCAAAAAGGAGCTTGAGCAGGAGCCAGAGTGAGAGTCCTCGGAGGATCTTGAGCAGGAGCCTGAGCAGAAGCCCCAGAAGGGTATTGAGTAGAAGTCCTCGAATGAGTTTGAGTAGGAGCCCAAGTGTGATAGCTCGCAGGCATTTAAGCAGAAGCCCAAGTGTGGTCACTCGTAGGCCTTTAAGCCGGAGTCCACGAAGGAGTTTGAGTAGACATTCACGGCAAAACCTAGCCCAAAGTCCCCCGAAAAGTCGAAGCAGTCCTCCAAGCAGAAGGTTGTCAAGAAGTCGTAGTCCTGTTGTTGATAAGAGTACACTTCCCCCTCCTAATCAAAGTCAGACTACAGCAAGAAGTCCTAGCCCAGAGGGCACACCTAAACGCGTGCGAAGAGGTCGTGGGTTCAGCCAGCGTTACTCTTATGCTCGTCGTTATCGAACTCCTTCTCCAGACCGCTCTCCCCCAAGGTCTCATCGCGTCAGTGAAAGGAGTATTCCTGAAAGGGACAGATATTCAAGTTATAGGAGTTACTCTGAGCGCTCTCCAGCAAGACATTACAGAAACCCACCAAGAGGCAGGACTCCTCCAAGGTACAGGAGGAGCAGGAGTCGAAGCATGAGTTATAGCCCTGTAGCCTATCGGAACCGGAGAAGAAATCGAAGTCTCAGCCGCAGTCGTAGTCCTGCAGATGAGCGTCCTCGTGTCAGTGATCAGTTGCGCTCTCGTCTTGGTCCACGAGATTCATACGAAAGTAGAGGAAGGAGGGGCCGGTCCCCCTCAAGAAGCAGAAGCTCTTCTATGTCAAGATCGTCCGAGAGCTTGCCTGCGGACAATCGGCGCACTGCTTCTAGTGATAAGCACAAATCAGTACATTCCCCCAGGGGACAGCGGTCACCAGCAGCTTCACTTAGCAAATCGATGTCTCGAAGCCGAACACCACCAGGAAATGGGAACCTCGTCTCATATGGGGATGGAAGTCCTGATTCACGTTCCAAGTAA___TTATGTAGTATGTAGAAGTAGAACTCATGGTCTACTTTAGAAATGTAAAAGAAAGGTTAGGCAATTCCAGGCTTTATTGATGTGAACTGAGTAGATTTTTCCATGTTGAATTTTCCTTGAAACATTGCAAATAGTGGGCATTGTAGTAACTGACAATCTTATAATCCTTGGTTATATAGTCGTAATCCAGATTGTCATTTGGATTTTTTGATAATATGAAAGATGATTTTTATGGTGGTGTAAGTATTGAAGTAGAACTCATGGTCTACTTTAGAAATG

Fln Alignment:

sp_v1.1_unigene1204___NPRVFMDILVDGERAGTIVLELFADIVPKTAENFRALCTGEKGIGRTTKKPLHYKGSTFHRIIKGFVAQGGDFSKKDGTGGESIYGGKFADENFQLCHDGPGILSMANAGPHTNGSQFFITFAAAPHLDGKHVVFGRVVEGIDVMKKIERLPTADRGRPVVPVKISNCGEVS
Q8VXA5______________NPKVFFDMQVGGAPAGRIVMELYADVVPKTAENFRALCTGERGTGRSGK-PLHFKSSTFHRVIPGFMCQGGDFTRGNGTGGESIYGEKFADENFARKHTGPGILSMANAGPNTNGSQFFICTAQTSWLDGKHVVFGQVVEGLDVVREIEKVGSGS-GRTSKPVSIADCGQLS

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
112			66	33	0.997452
163	66		33		0.997452
176	25		75		0.996473
177			75	25	0.996473
179			25	75	0.996473
180	75		25		0.996473
181		75	25		0.996473
367		25		75	0.996473
398	20			80	0.995493
400			20	80	0.995493
402		80	20		0.995493
434	87		12		0.992554
435		12	87		0.992554
436	87			12	0.992554
443	12			87	0.992554
456	87		12		0.992554
630			88	11	0.923564
632	11	88			0.923564
634		88		11	0.923564
635		11	88		0.923564
636	11		88		0.923564
664	22		77		0.999999
850			88	11	0.923564
891	85		14		0.993533
893	85		14		0.993533
895	14		85		0.993533
904	85		14		0.993533
1022		16		83	0.994512
1030	83		16		0.994512
1111		14		85	0.993533
1135			80	20	0.995493
1489	75		25		0.996473
1558	14	85			0.993533
1562	16		83		0.994512
1714	87		12		0.992554
1763		85		14	0.993533
1842		83		16	0.994512
1997	25		75		0.996473
1998		75		25	0.996473
1999			75	25	0.996473
2000	75			25	0.996473
2001	75		25		0.996473
2003	75		25		0.996473
2048	25		75		0.996473
2515		84	15		0.999986
2516	84		15		0.999986
2689	62			37	1.0
2815	11			88	0.923564
2817			11	88	0.923564
2818			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain