SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1202

Length: 1328 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1202

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative nodulin-like protein n=1 Tax=Gossypioides kirkii RepID=B2ZAQ4_9ROSI	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	protein	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	0.0	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABM1

Fln msg: your sequence is shorter than subject: 285 - 371

Fln protein: WTILFQIFLLASGITVTQNCYIQGLYYTSSTFGSAAQNLLPMFTFAMATLLRLETVNIRSLGGQAKVIGTVISVSGAMIMTLYKGPVLKFLSPGVEGHLMASNSKPKNLVLGSILVFGSIVTWSACIVFQAPFLKRYPAQLSLTAFACFFGSLQSGLIAVIWERKKSNIWAIGWNFKLLGVVYSGIMCSALGMYVQAWCIAKRGPLFVAIFSPLGTVITAIMELIILHVYLRLGSVVGAIVIVLGLYTALWGKANDLATEATAVVDENRIQLGAQPIEKEEATV*

Protein Length: 286

Fln nts: ATGGACCATTTTATTTCAAATTTTCTTGCTTGCAAGTGGAATCACGGTCACACAGAATTGCTATATTCAAGGATTGTACTATACTTCTTCTACTTTTGGTTCAGCAGCACAAAACCTATTACCAATGTTTACATTTGCAATGGCCACATTGCTAAGACTTGAAACAGTTAATATCAGAAGTTTAGGAGGACAAGCAAAGGTTATTGGCACAGTTATTTCAGTCAGTGGTGCAATGATCATGACATTATACAAGGGTCCTGTTCTTAAGTTTTTATCACCTGGTGTTGAAGGCCATTTAATGGCATCCAATTCTAAACCGAAGAACCTTGTACTTGGCTCCATCTTGGTCTTTGGGAGCATCGTGACCTGGTCTGCATGCATTGTTTTTCAGGCACCTTTTCTGAAGAGGTACCCGGCCCAGTTATCATTAACAGCATTCGCGTGTTTTTTTGGATCATTACAGTCTGGTCTAATTGCTGTAATCTGGGAGCGTAAGAAATCTAATATCTGGGCTATAGGATGGAATTTTAAGCTCCTGGGAGTTGTGTACTCGGGAATAATGTGTTCAGCGTTGGGGATGTATGTGCAAGCTTGGTGTATAGCCAAACGGGGGCCTTTATTCGTGGCAATCTTCAGTCCTCTGGGTACGGTTATAACTGCAATTATGGAGCTTATCATTCTCCATGTTTATCTGCGTTTGGGAAGTGTTGTGGGAGCAATAGTAATCGTTTTGGGACTTTACACTGCACTGTGGGGCAAAGCGAACGACTTGGCAACGGAAGCGACGGCAGTTGTTGATGAGAACCGTATTCAGTTAGGAGCACAACCAATTGAAAAGGAAGAGGCGACCGTTTGA___AAAGGTCATGTGGGAGCATATTCCTATTCTGAGCAGTGCCTTTCTCTTTTCTGCAACAGACTTTCTTAAAGCTAATGCTATTCGATTGTGTATGGCTGTATGTTTGGAACGTTTAGTTACAGCAGCAGAAATACTGGCACAATATTTTTTATGTTTAGCCAAACCATGACGTGGTGGTGTAAGAATGACGTGGCGCATCCGTCCGACATATGTTGTGGAAATGTTTTGGTAATATCAAATCATTTTATTGTTGTAAATATAGGAAGTGATCTGAAAATGATCAATTTAACATAGGTGCAGTAGGGTAGTATAGCGCAATACAAGTATCAGCACTATCAAAATGTTTTACATTTTGAAATCGTTAGTAAGTTAACGTGCCGTAGCGTAGGGTAGTATAGCGCAATACAAGTATCAGCACTATCAAAATGTTTTACATTTTGAAATCGTTAGTAAGTTAACGTGCCGTAGGGTG

Fln Alignment:

sp_v1.1_unigene1202___TILFQIFLLA-SGITVTQNCYIQGLYYTSSTFGSAAQNLLPMFTFAMATLLRLETVNIRSLGGQAKVIGTVISVSGAMIMTLYKGPVLKFLSPGVEGHLMASNSKPKNLVLGSILVFGSIVTWSACIVFQAPFLKRYPAQLSLTAFACFFGSLQSGLIAVIWERKKSNIWAIGWNFKLLGVVYSGIMCSALGMYVQAWCIAKRGPLFVAIFSPLGTVITAIMELIILHVYLRLGSVVGAIVIVLGLYTALWGKAND
D5ABM1______________SIFLQIFLLALCGITVNQNLYFAGLYYTNSTFASATTNLIPVVTFVMATVLRYEKVEIRKMRGKAKVVGTTICVGGAMVITLYKGPVIKLLT-AYNSTANYNNILGSKRVLGCILLFASVFTWSSWITFQVPVAKKYPAELSLTALMCMLGAVQSGVLAFICEYKTPSVWSISWNIEPLSYVYTGVLCSAFAFFVQTWCVHTKGPVFAAIFNPLSTILVALLECLVFHDNLHAGSVVGAVLIVGGLYSVLWGKAKD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1025		75	25		0.996473
1110	25		75		0.996473
1117	75			25	0.996473
1129	66		33		0.997452
1134	66	33			0.997452
1167	66		33		0.997452
1168	33		66		0.997452
1169	33			66	0.997452
1171			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain